Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_23140 Physcomitrium patens HOM05D016224 ORTHO05D023076 4.2e-265 917.5 483 100.0
Pp3c8_3850 Physcomitrium patens HOM05D016224 ORTHO05D023076 1.5e-105 387.5 491 51.5
Pp3c4_3630 Physcomitrium patens HOM05D016224 ORTHO05D023076 8.0e-91 338.6 425 50.4
Pp3c19_13560 Physcomitrium patens HOM05D016224 ORTHO05D023076 3.3e-28 130.6 435 30.1
Pp3c18_6640 Physcomitrium patens HOM05D016224 ORTHO05D023076 3.8e-24 117.1 274 31.0
Pp3c22_14520 Physcomitrium patens HOM05D016224 ORTHO05D023076 2.1e-22 111.3 257 31.1
AagrBONN_evm.TU.Sc2ySwM_228.2886 Anthoceros agrestis HOM05D000085 ORTHO05D001756 2.7e-14 84.3 155 31.6
Manes.04G153800 Manihot esculenta HOM05D000085 ORTHO05D006184 3.0e-13 80.9 150 28.7
Potri.001G224800 Populus trichocarpa HOM05D000085 ORTHO05D006184 3.9e-13 80.5 148 32.4
TWI79G0144 Tripterygium wilfordii HOM05D000085 ORTHO05D006184 3.9e-13 80.5 150 28.0
Potri.003G189850 Populus trichocarpa HOM05D000085 ORTHO05D006184 6.7e-13 79.7 146 28.1
Gohir.D10G199700 Gossypium hirsutum HOM05D000085 ORTHO05D006184 1.5e-12 78.6 180 28.9
Lsat_1_v5_gn_2_96380 Lactuca sativa HOM05D000085 ORTHO05D006184 7.4e-12 76.3 146 30.1
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 9.7e-12 75.9 193 30.1
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 2.2e-11 74.7 161 26.7
FAN03G0175 Fragaria x ananassa HOM05D000085 ORTHO05D006184 2.2e-11 74.7 167 27.5
Gorai.011G223900 Gossypium raimondii HOM05D000085 ORTHO05D006184 2.2e-11 74.7 155 29.0
FAN01G1090 Fragaria x ananassa HOM05D000085 ORTHO05D006184 2.8e-11 74.3 147 28.6
VMungo0647G1792 Vigna mungo HOM05D000085 ORTHO05D006184 2.8e-11 74.3 145 27.6
FAN06G0172 Fragaria x ananassa HOM05D000085 ORTHO05D006184 6.3e-11 73.2 147 27.9
FAN06G0213 Fragaria x ananassa HOM05D000085 ORTHO05D006184 6.3e-11 73.2 147 27.9
Actinidia24490 Actinidia chinensis HOM05D000085 ORTHO05D006184 1.4e-10 72.0 161 28.0
PSO675G2913 Papaver somniferum HOM05D000085 ORTHO05D006184 2.4e-10 71.2 147 27.2
Manes.01G176300 Manihot esculenta HOM05D000085 ORTHO05D006184 3.1e-10 70.9 161 26.1
Aqoxy2G00032 Aquilegia oxysepala HOM05D000085 ORTHO05D006184 4.1e-10 70.5 148 26.4
AagrBONN_evm.TU.Sc2ySwM_117.1415 Anthoceros agrestis HOM05D016224 ORTHO05D010508 9.1e-10 69.3 253 24.9
Lj3g0006871 Lotus japonicus HOM05D000085 ORTHO05D006184 2.6e-09 67.8 150 25.3
Manes.02G172500 Manihot esculenta HOM05D000085 ORTHO05D009791 3.4e-09 67.4 155 24.5
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 3.4e-09 67.4 164 27.4
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 5.9e-09 66.6 164 28.7
TPR.G16382 Trifolium pratense HOM05D000085 ORTHO05D006184 1.0e-08 65.9 146 27.4
Duzib128G0691 Durio zibethinus HOM05D000085 ORTHO05D006184 1.7e-08 65.1 161 21.1
CsaV3_5G029350 Cucumis sativus L. HOM05D000085 ORTHO05D006184 2.9e-08 64.3 178 25.8
Lj2A829G58 Lonicera japonica HOM05D000085 ORTHO05D006184 2.9e-08 64.3 269 24.2
DCAR_029721 Daucus carota HOM05D000085 ORTHO05D006184 3.8e-08 63.9 212 24.5
Pp3c17_19290 Physcomitrium patens HOM05D000085 ORTHO05D001756 3.8e-08 63.9 183 27.9
Pp3c8_1070 Physcomitrium patens HOM05D000085 ORTHO05D001756 3.8e-08 63.9 146 28.1
Aqoxy6G00345 Aquilegia oxysepala HOM05D000085 ORTHO05D009791 5.0e-08 63.5 151 24.5
MELO3C011783.2 Cucumis melo HOM05D000085 ORTHO05D006184 5.0e-08 63.5 175 26.3
Glyma.13G187700 Glycine max HOM05D000085 ORTHO05D006184 5.0e-08 63.5 150 26.0
Gohir.A10G191900 Gossypium hirsutum HOM05D000085 ORTHO05D006184 5.0e-08 63.5 166 24.7
PGR044G1330 Punica granatum HOM05D000085 ORTHO05D006184 6.5e-08 63.2 152 27.0
PGR119G1958 Punica granatum HOM05D000085 ORTHO05D006184 6.5e-08 63.2 169 25.4
Lj4A685T34 Lonicera japonica HOM05D000085 ORTHO05D009791 8.5e-08 62.8 157 24.2
Potri.001G035900 Populus trichocarpa HOM05D000085 ORTHO05D006184 8.5e-08 62.8 154 23.4
Duzib168G1166 Durio zibethinus HOM05D000085 ORTHO05D006184 1.1e-07 62.4 157 24.8
MBI19_g24735_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D006184 1.1e-07 62.4 160 24.4
FAN10G2237 Fragaria x ananassa HOM05D000085 ORTHO05D006184 1.4e-07 62.0 105 30.5
MBI19_g24736_MAGBIO Magnolia biondii HOM05D000085 ORTHO05D006184 1.4e-07 62.0 174 23.6
PSO541G3755 Papaver somniferum HOM05D000085 ORTHO05D006184 1.9e-07 61.6 158 24.7
Pp3c3_13770 Physcomitrium patens HOM05D026724 ORTHO05D020966 2.5e-07 61.2 199 29.6
AagrBONN_evm.TU.Sc2ySwM_117.1414 Anthoceros agrestis HOM05D016224 ORTHO05D010508 3.2e-07 60.8 204 26.0
Thecc.10G132100 Theobroma cacao HOM05D000085 ORTHO05D006184 3.2e-07 60.8 259 22.8
Lj9A652T57 Lonicera japonica HOM05D000085 ORTHO05D006184 5.5e-07 60.1 159 24.5
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 7.2e-07 59.7 282 25.9
Atru.chr13.1646 Acer truncatum HOM05D000085 ORTHO05D009791 9.4e-07 59.3 154 24.0
Nitab4.5_0007610g0030 Nicotiana tabacum HOM05D000085 ORTHO05D006184 1.2e-06 58.9 152 26.3
Pp3c11_18470 Physcomitrium patens HOM05D000085 ORTHO05D001756 1.2e-06 58.9 155 26.5
CAN.G134.31 Capsicum annuum HOM05D000085 ORTHO05D006184 3.6e-06 57.4 151 25.2
RcHm_v2.0_Chr7g0209801 Rosa chinensis HOM05D008363 ORTHO05D010508 4.7e-06 57.0 161 24.8
Dinv03760 Davidia involucrata HOM05D000085 ORTHO05D006184 6.1e-06 56.6 90 33.3
FAN08G0799 Fragaria x ananassa HOM05D008363 ORTHO05D010508 6.1e-06 56.6 148 26.4
FAN13G1991 Fragaria x ananassa HOM05D008363 ORTHO05D010508 6.1e-06 56.6 148 26.4
FAN18G1001 Fragaria x ananassa HOM05D008363 ORTHO05D010508 6.1e-06 56.6 148 26.4
Glyma.04G126000 Glycine max HOM05D000085 ORTHO05D006184 6.1e-06 56.6 235 25.5
Medtr0205s0040 Medicago truncatula HOM05D000085 ORTHO05D015977 7.9e-06 56.2 145 24.1
Solyc04g063370.3 Solanum lycopersicum HOM05D000085 ORTHO05D009791 7.9e-06 56.2 125 24.8
Sopen04g026290 Solanum pennellii HOM05D000085 ORTHO05D009791 7.9e-06 56.2 125 24.8


User provided reference genes

Program Settings