Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 8.9e-50 199.9 97 100.0
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 2.8e-19 98.6 53 92.5
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 3.1e-10 68.6 59 54.2
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 4.1e-10 68.2 59 52.5
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 9.0e-10 67.0 59 52.5
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 1.2e-09 66.6 59 50.8
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 1.2e-09 66.6 59 50.8
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 1.5e-09 66.2 59 50.8
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 1.5e-09 66.2 59 50.8
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 1.5e-09 66.2 59 50.8
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 1.5e-09 66.2 59 50.8
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.0e-09 65.9 59 52.5
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 2.0e-09 65.9 59 50.8
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 2.0e-09 65.9 59 50.8
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 2.0e-09 65.9 59 52.5
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 2.6e-09 65.5 59 50.8
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 2.6e-09 65.5 59 50.8
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 2.6e-09 65.5 59 50.8
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 2.6e-09 65.5 59 50.8
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 2.6e-09 65.5 59 50.8
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 3.4e-09 65.1 59 50.8
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 4.5e-09 64.7 59 50.8
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 4.5e-09 64.7 59 50.8
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 4.5e-09 64.7 59 50.8
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 4.5e-09 64.7 59 50.8
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.5e-09 64.7 59 50.8
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.5e-09 64.7 59 50.8
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 4.5e-09 64.7 59 49.2
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 4.5e-09 64.7 59 50.8
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 5.9e-09 64.3 59 49.2
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 5.9e-09 64.3 59 50.8
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 5.9e-09 64.3 59 47.5
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 5.9e-09 64.3 59 49.2
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 5.9e-09 64.3 59 50.8
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 5.9e-09 64.3 59 50.8
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 5.9e-09 64.3 59 49.2
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 5.9e-09 64.3 59 50.8
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 7.6e-09 63.9 59 50.8
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 7.6e-09 63.9 59 50.8
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 7.6e-09 63.9 59 49.2
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 7.6e-09 63.9 59 49.2
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 7.6e-09 63.9 59 49.2
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 7.6e-09 63.9 59 49.2
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.0e-08 63.5 59 49.2
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.0e-08 63.5 59 49.2
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 1.0e-08 63.5 59 49.2
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 1.0e-08 63.5 59 50.8
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 1.0e-08 63.5 59 50.8
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 1.0e-08 63.5 59 49.2
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 1.0e-08 63.5 59 49.2
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 1.0e-08 63.5 59 49.2
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 1.0e-08 63.5 59 49.2
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 1.0e-08 63.5 59 49.2
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 1.0e-08 63.5 59 47.5
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.0e-08 63.5 59 50.8
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 1.0e-08 63.5 59 49.2
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 1.0e-08 63.5 59 49.2
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 1.0e-08 63.5 59 49.2
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.0e-08 63.5 59 47.5
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 1.3e-08 63.2 59 50.8
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 1.3e-08 63.2 59 49.2
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 1.3e-08 63.2 59 49.2
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 1.3e-08 63.2 58 51.7
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 1.3e-08 63.2 56 53.6
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 1.3e-08 63.2 59 49.2
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 1.3e-08 63.2 59 49.2
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.3e-08 63.2 59 49.2
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 1.3e-08 63.2 59 49.2
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.3e-08 63.2 59 47.5
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 1.3e-08 63.2 59 49.2
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 1.3e-08 63.2 59 49.2
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 1.7e-08 62.8 59 49.2
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 1.7e-08 62.8 59 49.2
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 1.7e-08 62.8 59 49.2
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.7e-08 62.8 59 49.2
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.7e-08 62.8 59 49.2
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 1.7e-08 62.8 59 47.5
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 1.7e-08 62.8 59 49.2
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 2.2e-08 62.4 59 49.2
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 2.2e-08 62.4 59 49.2
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 2.2e-08 62.4 59 49.2
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 2.2e-08 62.4 59 47.5
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 2.2e-08 62.4 59 50.8
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 2.9e-08 62.0 59 47.5
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 2.9e-08 62.0 59 49.2
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 2.9e-08 62.0 59 49.2
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 2.9e-08 62.0 59 49.2
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 2.9e-08 62.0 59 49.2
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 2.9e-08 62.0 59 47.5
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 5.0e-08 61.2 59 49.2
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 5.0e-08 61.2 59 49.2
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 5.0e-08 61.2 59 49.2
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 5.0e-08 61.2 59 49.2
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 5.0e-08 61.2 59 47.5
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 5.0e-08 61.2 59 49.2
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 5.0e-08 61.2 59 49.2
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 5.0e-08 61.2 59 47.5
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 6.5e-08 60.8 59 45.8
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 6.5e-08 60.8 59 47.5
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 8.5e-08 60.5 59 47.5
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 8.5e-08 60.5 51 52.9
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 8.5e-08 60.5 79 40.5
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 8.5e-08 60.5 56 51.8
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 1.1e-07 60.1 59 47.5
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.4e-07 59.7 59 49.2
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 1.4e-07 59.7 59 49.2
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 1.4e-07 59.7 51 52.9
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 1.4e-07 59.7 59 50.8
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 1.4e-07 59.7 59 50.8
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 1.4e-07 59.7 59 49.2
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 1.9e-07 59.3 59 47.5
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 1.9e-07 59.3 59 47.5
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 1.9e-07 59.3 59 47.5
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 1.9e-07 59.3 59 47.5
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 1.9e-07 59.3 59 47.5
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 1.9e-07 59.3 59 47.5
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 1.9e-07 59.3 59 47.5
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 1.9e-07 59.3 59 47.5
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 1.9e-07 59.3 59 47.5
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 2.5e-07 58.9 59 47.5
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 3.2e-07 58.5 80 40.0
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 3.2e-07 58.5 59 47.5
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 3.2e-07 58.5 56 48.2
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 4.2e-07 58.2 56 46.4
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 7.2e-07 57.4 59 47.5
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 9.3e-07 57.0 59 47.5
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 9.3e-07 57.0 58 44.8
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 2.1e-06 55.8 59 44.1
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 2.7e-06 55.5 58 44.8
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 7.9e-06 53.9 50 50.0


User provided reference genes

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