Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 7.5e-95 350.5 178 100.0
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 1.5e-66 256.5 170 77.1
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.1e-43 178.3 171 52.0
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 1.1e-42 177.2 175 50.9
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.5e-42 176.8 171 53.2
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 1.9e-42 176.4 154 58.4
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 2.5e-42 176.0 166 53.0
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 3.3e-42 175.6 163 56.4
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 3.3e-42 175.6 167 55.1
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 5.6e-42 174.9 173 50.9
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 7.4e-42 174.5 175 51.4
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 7.4e-42 174.5 171 51.5
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 7.4e-42 174.5 174 52.9
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 1.6e-41 173.3 175 50.9
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 1.6e-41 173.3 168 52.4
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 2.1e-41 172.9 173 50.9
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.1e-41 172.9 171 51.5
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 3.7e-41 172.2 163 50.9
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 3.7e-41 172.2 166 51.8
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 3.7e-41 172.2 176 53.4
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 4.8e-41 171.8 175 50.9
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 4.8e-41 171.8 168 50.6
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 4.8e-41 171.8 157 57.3
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 6.2e-41 171.4 165 55.8
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 6.2e-41 171.4 166 53.6
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 8.2e-41 171.0 175 50.3
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 8.2e-41 171.0 171 50.9
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 8.2e-41 171.0 154 56.5
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.1e-40 170.6 171 50.9
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 1.4e-40 170.2 175 50.3
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 1.4e-40 170.2 172 52.3
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 1.8e-40 169.9 175 50.3
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 1.8e-40 169.9 180 51.7
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 1.8e-40 169.9 169 53.3
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 1.8e-40 169.9 177 50.8
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 2.4e-40 169.5 164 53.7
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 4.0e-40 168.7 172 51.2
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 5.3e-40 168.3 167 51.5
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 5.3e-40 168.3 172 51.7
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 5.3e-40 168.3 172 51.7
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 5.3e-40 168.3 171 52.0
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 6.9e-40 167.9 167 52.1
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 6.9e-40 167.9 166 51.2
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 6.9e-40 167.9 177 51.4
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 9.0e-40 167.5 157 54.1
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 9.0e-40 167.5 159 53.5
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 9.0e-40 167.5 159 53.5
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 1.2e-39 167.2 163 52.8
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 1.2e-39 167.2 159 53.5
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 1.5e-39 166.8 157 56.1
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 1.5e-39 166.8 154 55.2
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 1.5e-39 166.8 189 47.6
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 1.5e-39 166.8 165 53.3
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 2.0e-39 166.4 161 53.4
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 2.0e-39 166.4 162 54.3
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 2.0e-39 166.4 165 54.5
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 2.0e-39 166.4 174 50.6
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 2.0e-39 166.4 162 52.5
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 2.0e-39 166.4 153 54.9
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 2.6e-39 166.0 167 50.9
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 2.6e-39 166.0 155 54.2
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 3.4e-39 165.6 172 51.7
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 4.5e-39 165.2 172 50.0
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 5.8e-39 164.9 174 51.1
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 7.6e-39 164.5 178 50.0
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 7.6e-39 164.5 178 50.0
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 7.6e-39 164.5 165 52.1
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 1.0e-38 164.1 163 52.1
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 1.3e-38 163.7 166 52.4
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 1.3e-38 163.7 168 54.2
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 1.7e-38 163.3 167 51.5
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 2.2e-38 162.9 163 52.1
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 2.2e-38 162.9 166 51.8
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 2.9e-38 162.5 165 51.5
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 3.8e-38 162.2 166 50.6
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 3.8e-38 162.2 172 48.8
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 4.9e-38 161.8 176 51.7
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 4.9e-38 161.8 175 48.6
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 6.5e-38 161.4 167 50.9
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 8.4e-38 161.0 159 50.9
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 8.4e-38 161.0 157 52.2
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 1.1e-37 160.6 173 50.9
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 2.5e-37 159.5 153 53.6
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 2.5e-37 159.5 165 50.9
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 4.2e-37 158.7 163 50.3
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 4.2e-37 158.7 160 50.6
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 7.1e-37 157.9 169 49.7
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 7.1e-37 157.9 153 53.6
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 1.2e-36 157.1 153 53.6
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 2.1e-36 156.4 173 48.6
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 3.5e-36 155.6 168 47.6
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 3.5e-36 155.6 181 48.1
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 4.6e-36 155.2 153 52.9
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 6.0e-36 154.8 153 52.9
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 7.9e-36 154.5 170 50.0
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 1.0e-35 154.1 131 57.3
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 1.0e-35 154.1 205 42.9
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 1.0e-35 154.1 180 48.3
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 3.9e-35 152.1 159 49.7
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 3.9e-35 152.1 163 50.3
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 6.7e-35 151.4 160 49.4
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 1.9e-34 149.8 170 47.6
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 1.9e-34 149.8 176 46.0
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 2.5e-34 149.4 171 48.5
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 2.5e-34 149.4 162 51.2
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.2e-33 146.4 153 51.0
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 2.2e-33 146.4 153 51.0
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.8e-33 146.0 153 50.3
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 4.8e-33 145.2 175 45.7
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 6.3e-33 144.8 134 56.0
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 1.1e-32 144.1 159 48.4
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 1.4e-32 143.7 133 56.4
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 1.8e-32 143.3 175 45.1
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 2.4e-32 142.9 225 38.2
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 5.3e-32 141.7 151 50.3
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 1.2e-31 140.6 174 45.4
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 1.2e-31 140.6 166 47.0
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.9e-30 136.0 201 41.3
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.2e-29 132.5 150 46.0
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 4.2e-29 132.1 165 44.8
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 1.6e-28 130.2 171 42.1
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 3.6e-28 129.0 165 46.7
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 3.6e-28 129.0 142 50.0
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 4.6e-28 128.6 167 42.5
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.0e-27 127.5 149 45.6
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 6.7e-27 124.8 175 41.7
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 6.7e-27 124.8 168 41.1
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 1.5e-26 123.6 132 49.2
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 6.9e-24 114.8 214 38.8
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 7.7e-23 111.3 201 36.3
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 1.3e-22 110.5 78 66.7
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 2.2e-22 109.8 133 48.9
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 5.0e-22 108.6 129 48.1
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 1.4e-21 107.1 78 67.9
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 5.5e-21 105.1 78 64.1
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 7.2e-21 104.8 78 66.7
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 9.4e-21 104.4 125 44.8
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 3.0e-19 99.4 78 65.4
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 6.7e-19 98.2 77 62.3
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 6.3e-17 91.7 152 36.2
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.4e-15 85.9 92 50.0
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.2e-14 83.2 121 40.5
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 4.2e-13 79.0 179 36.3
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 2.3e-11 73.2 174 32.8
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 3.9e-11 72.4 66 53.0
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 5.2e-11 72.0 69 47.8
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 2.8e-09 66.2 75 42.7


User provided reference genes

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