Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 0.0e+00 1357.0 707 100.0
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 3.6e-156 556.2 715 48.1
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 1.0e-142 511.5 710 46.3
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 1.5e-133 481.1 710 43.5
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 4.3e-133 479.6 708 42.8
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 1.8e-131 474.2 712 43.8
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 2.0e-130 470.7 702 44.2
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 4.4e-130 469.5 710 42.8
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 5.8e-130 469.2 702 44.4
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 9.8e-130 468.4 703 42.8
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 1.3e-129 468.0 703 42.8
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 1.3e-129 468.0 524 50.0
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 2.2e-129 467.2 705 42.6
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 1.1e-128 464.9 705 42.7
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 1.1e-128 464.9 711 43.0
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 4.1e-128 463.0 703 42.1
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 1.2e-127 461.5 713 42.5
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 2.0e-127 460.7 702 42.0
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 3.5e-127 459.9 702 42.2
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 3.5e-127 459.9 706 43.1
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 3.5e-127 459.9 705 43.1
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 7.8e-127 458.8 700 41.9
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 2.3e-126 457.2 701 41.7
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 3.0e-126 456.8 707 42.3
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 5.0e-126 456.1 707 40.6
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 5.0e-126 456.1 697 42.9
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 5.0e-126 456.1 705 42.7
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 1.1e-125 454.9 706 42.5
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 1.1e-125 454.9 709 42.3
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 5.6e-125 452.6 704 42.6
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 1.2e-124 451.4 741 42.2
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 3.1e-123 446.8 712 40.9
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 4.0e-123 446.4 707 41.2
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 5.2e-123 446.0 707 42.4
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 6.8e-123 445.7 716 41.6
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 8.9e-123 445.3 709 42.2
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 1.2e-122 444.9 700 42.0
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 3.4e-122 443.4 705 41.4
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 3.4e-122 443.4 716 40.2
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 4.4e-122 443.0 704 41.2
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 5.8e-122 442.6 752 39.6
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 1.7e-121 441.0 708 41.7
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 2.2e-121 440.7 713 41.2
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 3.7e-121 439.9 708 41.2
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 3.7e-121 439.9 708 41.4
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 3.7e-121 439.9 737 41.0
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 3.7e-121 439.9 711 41.5
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 1.1e-120 438.3 699 41.3
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 1.1e-120 438.3 489 50.5
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 1.9e-120 437.6 707 42.0
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 1.9e-120 437.6 708 41.1
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 2.4e-120 437.2 634 43.8
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 3.2e-120 436.8 706 42.1
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 3.2e-120 436.8 707 40.5
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 3.2e-120 436.8 709 41.3
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 7.0e-120 435.6 696 40.9
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 3.5e-119 433.3 710 39.7
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 3.5e-119 433.3 699 41.2
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 3.5e-119 433.3 714 40.5
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 7.8e-119 432.2 729 41.7
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 7.8e-119 432.2 707 41.7
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 1.0e-118 431.8 709 39.9
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 1.3e-118 431.4 708 40.8
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 1.3e-118 431.4 705 41.0
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.3e-118 431.4 699 41.2
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 1.7e-118 431.0 703 40.8
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 2.3e-118 430.6 703 40.0
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 5.1e-118 429.5 707 40.5
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 1.1e-117 428.3 708 40.7
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 1.5e-117 427.9 707 41.4
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 1.5e-117 427.9 719 41.6
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 1.6e-116 424.5 716 40.4
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 4.7e-116 422.9 710 40.1
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 1.1e-115 421.8 713 40.1
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 1.8e-115 421.0 703 41.4
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 2.3e-115 420.6 715 40.4
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 3.1e-115 420.2 629 43.7
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 8.9e-115 418.7 668 42.1
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 2.6e-114 417.2 708 40.8
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 3.4e-114 416.8 764 39.1
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 3.7e-113 413.3 698 40.0
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 4.9e-113 412.9 698 38.8
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 8.3e-113 412.1 702 39.5
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 1.9e-112 411.0 669 41.3
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 2.4e-112 410.6 704 40.8
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 5.4e-112 409.5 659 41.1
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 2.7e-111 407.1 381 55.1
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 4.6e-111 406.4 670 41.9
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 1.3e-110 404.8 643 40.3
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 1.2e-108 398.3 637 40.5
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 1.2e-106 391.7 637 40.7
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 1.5e-106 391.3 673 40.6
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 3.3e-101 373.6 675 40.1
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 1.2e-100 371.7 647 40.0
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 1.2e-95 355.1 712 37.6
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 5.8e-90 336.3 632 36.9
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 8.7e-86 322.4 626 39.1
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 7.4e-85 319.3 393 47.6
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.1e-83 313.9 300 52.7
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 1.6e-79 301.6 358 45.3
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 5.8e-74 283.1 262 51.9
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 8.5e-33 146.4 223 40.4
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 1.3e-28 132.5 282 33.3
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.2e-23 115.9 107 54.2
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 6.1e-23 113.6 97 54.6
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 5.7e-21 107.1 107 50.5
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.4e-19 102.4 103 49.5
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 3.9e-17 94.4 82 56.1
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.3e-16 91.3 82 51.2
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 1.4e-14 85.9 325 24.6
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 2.0e-10 72.0 316 29.1
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 6.6e-09 67.0 172 29.7
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.8e-07 61.6 43 60.5


User provided reference genes

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