Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_19050 Physcomitrium patens HOM05D000172 ORTHO05D004529 6.2e-79 297.4 146 100.0
Pp3c4_12030 Physcomitrium patens HOM05D000172 ORTHO05D004529 2.3e-33 146.0 118 64.4
PSO210G3915 Papaver somniferum HOM05D000172 ORTHO05D004529 1.3e-28 130.2 119 57.1
CANSAT64G0513 Cannabis sativa HOM05D000172 ORTHO05D004529 3.8e-28 128.6 118 58.5
PSO832G1111 Papaver somniferum HOM05D000172 ORTHO05D004529 6.5e-28 127.9 119 56.3
Rhsim06G0169300 Rhododendron simsii HOM05D000172 ORTHO05D004529 2.5e-27 125.9 119 55.5
Lalb_Chr04g0250171 Lupinus albus HOM05D000172 ORTHO05D004529 7.2e-27 124.4 117 56.4
TWI36G0304 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 7.2e-27 124.4 119 55.5
vmacro12149 Vaccinium macrocarpon HOM05D000172 ORTHO05D004529 7.2e-27 124.4 117 55.6
Actinidia09754 Actinidia chinensis HOM05D000172 ORTHO05D004529 9.4e-27 124.0 119 55.5
TWI75G1599 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 9.4e-27 124.0 119 55.5
DCAR_019739 Daucus carota HOM05D000172 ORTHO05D004529 1.2e-26 123.6 133 49.6
Dinv08710 Davidia involucrata HOM05D000172 ORTHO05D004529 1.2e-26 123.6 118 54.2
SGA_v2.0_scaffold49G18360 Striga asiatica HOM05D000172 ORTHO05D004529 1.2e-26 123.6 119 55.5
Manes.12G068300 Manihot esculenta HOM05D000172 ORTHO05D004529 2.1e-26 122.9 119 54.6
Eucgr.K00732 Eucalyptus grandis HOM05D000172 ORTHO05D004529 2.7e-26 122.5 119 52.1
Hma1.2p1_0445F.1_g154200 Hydrangea macrophylla HOM05D000172 ORTHO05D004529 2.7e-26 122.5 119 54.6
Hma1.2p1_2840F.1_g329340 Hydrangea macrophylla HOM05D000172 ORTHO05D004529 2.7e-26 122.5 119 54.6
CDE04G1854 Ceratophyllum demersum HOM05D000172 ORTHO05D004529 3.6e-26 122.1 119 52.9
Lj1A784T46 Lonicera japonica HOM05D000172 ORTHO05D004529 3.6e-26 122.1 117 55.6
Potri.014G160000 Populus trichocarpa HOM05D000172 ORTHO05D004529 3.6e-26 122.1 119 54.6
Aqoxy1G02876 Aquilegia oxysepala HOM05D000172 ORTHO05D004529 4.7e-26 121.7 119 53.8
MSTRG.14127 Avicennia marina HOM05D000172 ORTHO05D004529 4.7e-26 121.7 119 53.8
CSS0045460 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D004529 4.7e-26 121.7 119 53.8
HanXRQChr14g0429281 Helianthus annuus HOM05D000172 ORTHO05D004529 4.7e-26 121.7 119 54.6
Duzib138G0538 Durio zibethinus HOM05D000172 ORTHO05D004529 6.1e-26 121.3 119 54.6
GSVIVG01030525001 Vitis vinifera HOM05D000172 ORTHO05D004529 6.1e-26 121.3 119 53.8
Atru.chr6.3272 Acer truncatum HOM05D000172 ORTHO05D004529 7.9e-26 120.9 117 54.7
Ciclev10015327m.g Citrus clementina HOM05D000172 ORTHO05D004529 1.0e-25 120.6 117 54.7
Lsat_1_v5_gn_9_105181 Lactuca sativa HOM05D000172 ORTHO05D004529 1.0e-25 120.6 119 53.8
QL08p030114 Quercus lobata HOM05D000172 ORTHO05D004529 1.0e-25 120.6 119 53.8
Ah.14g083060 Amaranthus hybridus HOM05D000172 ORTHO05D004529 1.4e-25 120.2 119 52.9
CiPaw.03G153600 Carya illinoinensis HOM05D000172 ORTHO05D004529 1.4e-25 120.2 119 52.9
CiPaw.04G108900 Carya illinoinensis HOM05D000172 ORTHO05D004529 1.4e-25 120.2 119 53.8
Gohir.A07G168200 Gossypium hirsutum HOM05D000172 ORTHO05D004529 1.4e-25 120.2 121 52.1
Lalb_Chr10g0105541 Lupinus albus HOM05D000172 ORTHO05D004529 1.4e-25 120.2 117 53.0
arahy.Tifrunner.gnm1.ann1.0SG038 Arachis hypogaea HOM05D000172 ORTHO05D004529 1.8e-25 119.8 118 53.4
arahy.Tifrunner.gnm1.ann1.0YR97U Arachis hypogaea HOM05D000172 ORTHO05D004529 1.8e-25 119.8 118 53.4
MSTRG.14865 Avicennia marina HOM05D000172 ORTHO05D004529 1.8e-25 119.8 119 53.8
AUR62017578 Chenopodium quinoa HOM05D000172 ORTHO05D004529 1.8e-25 119.8 119 52.9
MD17G1107800 Malus domestica HOM05D000172 ORTHO05D004529 1.8e-25 119.8 119 52.9
Solyc07g049450.3 Solanum lycopersicum HOM05D000172 ORTHO05D004529 1.8e-25 119.8 117 54.7
Sopen07g024800 Solanum pennellii HOM05D000172 ORTHO05D004529 1.8e-25 119.8 117 54.7
Thecc.01G183900 Theobroma cacao HOM05D000172 ORTHO05D004529 1.8e-25 119.8 119 53.8
FAN02G0745 Fragaria x ananassa HOM05D000172 ORTHO05D004529 2.3e-25 119.4 117 53.8
Glyma.02G266900 Glycine max HOM05D000172 ORTHO05D004529 2.3e-25 119.4 118 54.2
Gohir.D11G159300 Gossypium hirsutum HOM05D000172 ORTHO05D004529 2.3e-25 119.4 119 53.8
Gorai.007G169700 Gossypium raimondii HOM05D000172 ORTHO05D004529 2.3e-25 119.4 119 53.8
RcHm_v2.0_Chr2g0157821 Rosa chinensis HOM05D000172 ORTHO05D004529 2.3e-25 119.4 119 53.8
PGSC0003DMG400000661 Solanum tuberosum HOM05D000172 ORTHO05D004529 2.3e-25 119.4 117 53.8
Ca_06051_v3 Cicer arietinum L. HOM05D000172 ORTHO05D004529 3.0e-25 119.0 118 55.1
Haze_12753 Corylus avellana HOM05D000172 ORTHO05D004529 3.0e-25 119.0 119 52.1
FAN09G3260 Fragaria x ananassa HOM05D000172 ORTHO05D004529 3.0e-25 119.0 117 53.8
Nn1g03356 Nelumbo nucifera HOM05D000172 ORTHO05D004529 3.0e-25 119.0 117 52.1
Nn1g07319 Nelumbo nucifera HOM05D000172 ORTHO05D004529 3.0e-25 119.0 117 53.8
Sabra14G0121700 Salix brachista HOM05D000172 ORTHO05D004529 3.0e-25 119.0 119 53.8
ATR1128G012 Amborella trichopoda HOM05D000172 ORTHO05D004529 3.9e-25 118.6 117 53.0
ECA240G4132 Erigeron canadensis HOM05D002544 ORTHO05D004529 3.9e-25 118.6 119 52.9
FvH4_6g41940 Fragaria vesca HOM05D000172 ORTHO05D004529 3.9e-25 118.6 117 53.8
FAN14G3661 Fragaria x ananassa HOM05D000172 ORTHO05D004529 3.9e-25 118.6 117 53.8
Medtr5g084930 Medicago truncatula HOM05D000172 ORTHO05D004529 3.9e-25 118.6 117 53.8
CSS0041321 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D004529 5.1e-25 118.2 119 52.9
Cfa014306 Carpinus fangiana HOM05D000172 ORTHO05D004529 5.1e-25 118.2 119 52.1
COL.COLO4_07252 Corchorus olitorius HOM05D000172 ORTHO05D004529 5.1e-25 118.2 135 48.1
Nitab4.5_0000130g0060 Nicotiana tabacum HOM05D000172 ORTHO05D004529 5.1e-25 118.2 116 54.3
DCAR_021129 Daucus carota HOM05D000172 ORTHO05D004529 6.7e-25 117.9 118 52.5
Gohir.D07G174500 Gossypium hirsutum HOM05D000172 ORTHO05D004529 6.7e-25 117.9 119 51.3
EL10Ac9g22817 Beta vulgaris HOM05D000172 ORTHO05D004529 8.8e-25 117.5 119 51.3
AUR62015115 Chenopodium quinoa HOM05D000172 ORTHO05D004529 8.8e-25 117.5 130 50.0
LjContig00029g0026614 Lotus japonicus HOM05D000172 ORTHO05D004529 8.8e-25 117.5 118 52.5
C05p03170 Brassica napus HOM05D000172 ORTHO05D004529 1.1e-24 117.1 119 53.8
BolC5t29097H Brassica oleracea HOM05D000172 ORTHO05D004529 1.1e-24 117.1 119 53.8
MELO3C019722.2 Cucumis melo HOM05D000172 ORTHO05D004529 1.1e-24 117.1 118 53.4
Gorai.001G195100 Gossypium raimondii HOM05D000172 ORTHO05D004529 1.1e-24 117.1 119 51.3
Oeu054513.2 Olea europaea HOM05D000172 ORTHO05D004529 1.1e-24 117.1 117 52.1
TWI18G0101 Tripterygium wilfordii HOM05D000172 ORTHO05D004529 1.1e-24 117.1 119 52.9
A10p03460 Brassica napus HOM05D000172 ORTHO05D004529 1.5e-24 116.7 119 53.8
BraA10t42622Z Brassica rapa HOM05D000172 ORTHO05D004529 1.5e-24 116.7 119 53.8
CsaV3_6G015540 Cucumis sativus L. HOM05D000172 ORTHO05D004529 1.5e-24 116.7 119 50.4
Psat2g026680 Pisum sativum HOM05D000172 ORTHO05D004529 1.5e-24 116.7 118 52.5
Prupe.3G208600 Prunus persica HOM05D000172 ORTHO05D004529 1.5e-24 116.7 119 52.1
AT1G04980 Arabidopsis thaliana HOM05D000172 ORTHO05D004529 2.0e-24 116.3 119 53.8
Duzib133G0852 Durio zibethinus HOM05D000172 ORTHO05D004529 2.0e-24 116.3 119 52.1
FAN05G4236 Fragaria x ananassa HOM05D000172 ORTHO05D004529 2.0e-24 116.3 114 54.4
MD09G1116100 Malus domestica HOM05D000172 ORTHO05D004529 2.0e-24 116.3 119 52.1
Peaxi162Scf01333g00016 Petunia axillaris HOM05D000172 ORTHO05D004529 2.0e-24 116.3 116 52.6
TAR624G0902 Trochodendron aralioides HOM05D000172 ORTHO05D004529 2.0e-24 116.3 119 52.1
HPP92_018301 Vanilla planifolia HOM05D000172 ORTHO05D004529 2.0e-24 116.3 117 53.8
AL1G14710 Arabidopsis lyrata HOM05D000172 ORTHO05D004529 2.6e-24 115.9 119 53.8
Carub.0001s0422 Capsella rubella HOM05D000172 ORTHO05D004529 2.6e-24 115.9 119 53.8
Thhalv10007682m.g Eutrema salsugineum HOM05D000172 ORTHO05D004529 2.6e-24 115.9 119 53.8
Zm00001eb100620 Zea mays HOM05D000172 ORTHO05D004529 2.6e-24 115.9 119 52.9
Cpa.g.sc132.36 Carica papaya HOM05D000172 ORTHO05D004529 3.3e-24 115.5 119 52.1
Sc12g0002030 Simmondsia chinensis HOM05D000172 ORTHO05D004529 3.3e-24 115.5 119 51.3
Phvul.008G215100 Phaseolus vulgaris HOM05D000172 ORTHO05D004529 4.4e-24 115.2 118 53.4
PGR142G0986 Punica granatum HOM05D000172 ORTHO05D004529 4.4e-24 115.2 118 52.5
Zm00001eb314620 Zea mays HOM05D000172 ORTHO05D004529 4.4e-24 115.2 129 51.2
Sp1g03850 Schrenkiella parvula HOM05D000172 ORTHO05D004529 5.7e-24 114.8 119 52.9
unitig_578.g16013 Utricularia gibba HOM05D000172 ORTHO05D004529 5.7e-24 114.8 119 49.6
Gohir.A11G152400 Gossypium hirsutum HOM05D000172 ORTHO05D004529 7.4e-24 114.4 119 52.1
Sed0015934 Sechium edule HOM05D000172 ORTHO05D004529 7.4e-24 114.4 119 49.6
Migut.H01249 Erythranthe guttata HOM05D000172 ORTHO05D004529 9.7e-24 114.0 117 52.1
Aa31LG1G19810 Aethionema arabicum HOM05D000172 ORTHO05D004529 1.7e-23 113.2 119 52.1
Mapoly0041s0078 Marchantia polymorpha HOM05D000172 ORTHO05D004529 1.7e-23 113.2 117 51.3
Glyma.14G050600 Glycine max HOM05D000172 ORTHO05D004529 2.8e-23 112.5 118 52.5
SalBow1G3887 Salvia bowleyana HOM05D000172 ORTHO05D004529 2.8e-23 112.5 118 50.0
SalBow1G7178 Salvia bowleyana HOM05D000172 ORTHO05D004529 2.8e-23 112.5 118 50.0
VMungo0647G1522 Vigna mungo HOM05D000172 ORTHO05D004529 2.8e-23 112.5 118 50.8
AagrBONN_evm.TU.Sc2ySwM_117.284 Anthoceros agrestis HOM05D000172 ORTHO05D004529 3.7e-23 112.1 112 50.9
CARHR004390 Cardamine hirsuta HOM05D000172 ORTHO05D004529 3.7e-23 112.1 119 52.1
Hund24209 Selenicereus undatus HOM05D000172 ORTHO05D004529 3.7e-23 112.1 119 49.6
SMO146G0260 Selaginella moellendorffii HOM05D000172 ORTHO05D004529 4.8e-23 111.7 118 50.0
Oeu010999.1 Olea europaea HOM05D000172 ORTHO05D004529 6.3e-23 111.3 117 49.6
MBI16_g26178_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D004529 1.4e-22 110.2 118 52.5
THA.LOC104826128 Tarenaya hassleriana HOM05D000172 ORTHO05D004529 2.4e-22 109.4 119 50.4
Aa31LG5G4580 Aethionema arabicum HOM05D000172 ORTHO05D004529 7.0e-22 107.8 119 49.6
VMungo0331G0799 Vigna mungo HOM05D000172 ORTHO05D004529 7.0e-22 107.8 121 50.4
Oeu025371.1 Olea europaea HOM05D000172 ORTHO05D004529 1.2e-21 107.1 119 48.7
SHI10092 Sapria himalayana HOM05D000172 ORTHO05D004529 1.5e-21 106.7 119 47.1
C03p21560 Brassica napus HOM05D000172 ORTHO05D004529 2.6e-21 105.9 117 50.4
ClCG02G018150 Citrullus lanatus HOM05D000172 ORTHO05D004529 3.4e-21 105.5 118 49.2
THA.LOC104801013 Tarenaya hassleriana HOM05D000172 ORTHO05D004529 4.5e-21 105.1 121 47.9
BraA05t20211Z Brassica rapa HOM05D000172 ORTHO05D004529 3.8e-20 102.1 117 48.7
Cc05_g02520 Coffea canephora HOM05D000172 ORTHO05D004529 6.5e-20 101.3 118 47.5
AL4G28440 Arabidopsis lyrata HOM05D000172 ORTHO05D004529 8.5e-20 100.9 117 48.7
A05p12720 Brassica napus HOM05D000172 ORTHO05D004529 8.5e-20 100.9 117 48.7
C04p16640 Brassica napus HOM05D000172 ORTHO05D004529 8.5e-20 100.9 117 48.7
BolC4t23214H Brassica oleracea HOM05D000172 ORTHO05D004529 8.5e-20 100.9 117 48.7
Carub.0004s1435 Capsella rubella HOM05D000172 ORTHO05D004529 1.4e-19 100.1 117 47.9
Thhalv10016663m.g Eutrema salsugineum HOM05D000172 ORTHO05D004529 1.4e-19 100.1 117 47.0
Sp4g15280 Schrenkiella parvula HOM05D000172 ORTHO05D004529 1.4e-19 100.1 117 47.9
CARHR126850 Cardamine hirsuta HOM05D000172 ORTHO05D004529 1.9e-19 99.8 118 46.6
BcaC01g05872 Brassica carinata HOM05D000172 ORTHO05D004529 3.2e-19 99.0 117 47.0
AT2G32920 Arabidopsis thaliana HOM05D000172 ORTHO05D004529 5.5e-19 98.2 117 47.9
BcaB01g03946 Brassica carinata HOM05D000172 ORTHO05D004529 1.2e-18 97.1 119 46.2
Lj8A130T58 Lonicera japonica HOM05D000172 ORTHO05D004529 3.9e-17 92.0 118 45.8
CAN.G1254.2 Capsicum annuum HOM05D000172 ORTHO05D004529 1.8e-14 83.2 124 42.7
CDE07G0353 Ceratophyllum demersum HOM05D000172 ORTHO05D004529 1.6e-13 80.1 80 52.5
TPR.G25669 Trifolium pratense HOM05D000172 ORTHO05D004529 1.7e-12 76.6 80 52.5
HPP92_018317 Vanilla planifolia HOM05D000172 ORTHO05D004529 1.7e-12 76.6 116 42.2
TAR629G0025 Trochodendron aralioides HOM05D000172 ORTHO05D004529 2.9e-12 75.9 80 48.8
Lsat_1_v5_gn_1_87821 Lactuca sativa HOM05D000172 ORTHO05D004529 2.5e-11 72.8 88 47.7
Lsat_1_v5_gn_2_16921 Lactuca sativa HOM05D000172 ORTHO05D004529 3.2e-11 72.4 106 43.4
Cre07.g328150 Chlamydomonas reinhardtii HOM05D000172 ORTHO05D004529 8.0e-10 67.8 71 47.9
Lalb_Chr17g0347161 Lupinus albus HOM05D000172 ORTHO05D004529 1.5e-08 63.5 75 49.3
BcaB02g10506 Brassica carinata HOM05D000172 ORTHO05D004529 2.6e-08 62.8 79 46.8
Haze_27390 Corylus avellana HOM05D000172 ORTHO05D004529 2.2e-07 59.7 77 35.1
HPP92_018319 Vanilla planifolia HOM05D000172 ORTHO05D004529 2.8e-07 59.3 125 36.8
Lsat_1_v5_gn_6_104180 Lactuca sativa HOM05D000172 ORTHO05D004529 4.8e-07 58.5 44 61.4
Lsat_1_v5_gn_7_56041 Lactuca sativa HOM05D000172 ORTHO05D004529 8.2e-07 57.8 44 61.4
Lsat_1_v5_gn_3_66661 Lactuca sativa HOM05D000172 ORTHO05D004529 1.4e-06 57.0 44 59.1
Lsat_1_v5_gn_4_114760 Lactuca sativa HOM05D000172 ORTHO05D004529 1.4e-06 57.0 44 59.1


User provided reference genes

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