Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_17590 Physcomitrium patens HOM05D004936 ORTHO05D005977 4.6e-83 311.2 161 100.0
SMO353G0176 Selaginella moellendorffii HOM05D004936 ORTHO05D005977 1.3e-53 213.4 143 69.2
Mapoly0036s0081 Marchantia polymorpha HOM05D004936 ORTHO05D005977 1.9e-52 209.5 148 71.6
Aqoxy1G01790 Aquilegia oxysepala HOM05D004936 ORTHO05D005977 2.5e-49 199.1 146 63.7
C08p43440 Brassica napus HOM05D004936 ORTHO05D005977 5.6e-49 198.0 160 61.2
BolC8t51892H Brassica oleracea HOM05D004936 ORTHO05D005977 5.6e-49 198.0 160 61.2
CSS0031896 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 9.6e-49 197.2 163 61.3
CSS0046409 Camellia sinensis var. sinensis HOM05D004936 ORTHO05D005977 9.6e-49 197.2 163 61.3
A09p59990 Brassica napus HOM05D004936 ORTHO05D005977 1.3e-48 196.8 160 60.6
BraA09t41369Z Brassica rapa HOM05D004936 ORTHO05D005977 1.3e-48 196.8 160 60.6
Thhalv10008922m.g Eutrema salsugineum HOM05D004936 ORTHO05D005977 2.8e-48 195.7 160 59.4
Carub.0001s1794 Capsella rubella HOM05D004936 ORTHO05D005977 3.7e-48 195.3 146 63.0
AL1G30690 Arabidopsis lyrata HOM05D004936 ORTHO05D005977 4.8e-48 194.9 160 58.8
THA.LOC104812175 Tarenaya hassleriana HOM05D004936 ORTHO05D005977 4.8e-48 194.9 159 58.5
BcaC07g41334 Brassica carinata HOM05D004936 ORTHO05D005977 1.1e-47 193.7 159 59.7
Eucgr.K02762 Eucalyptus grandis HOM05D004936 ORTHO05D005977 1.4e-47 193.4 161 60.2
FvH4_3g39470 Fragaria vesca HOM05D004936 ORTHO05D005977 2.4e-47 192.6 146 61.0
FAN11G2192 Fragaria x ananassa HOM05D004936 ORTHO05D005977 2.4e-47 192.6 146 61.0
FAN16G3562 Fragaria x ananassa HOM05D004936 ORTHO05D005977 2.4e-47 192.6 146 61.0
FAN21G3073 Fragaria x ananassa HOM05D004936 ORTHO05D005977 2.4e-47 192.6 146 61.0
TAR636G1077 Trochodendron aralioides HOM05D004936 ORTHO05D005977 2.4e-47 192.6 146 63.7
Sp1g16280 Schrenkiella parvula HOM05D004936 ORTHO05D005977 3.1e-47 192.2 158 58.2
CDE06G1927 Ceratophyllum demersum HOM05D004936 ORTHO05D005977 4.0e-47 191.8 146 64.4
Ah.15g096180 Amaranthus hybridus HOM05D004936 ORTHO05D005977 6.9e-47 191.0 160 59.4
Os03g0296300 Oryza sativa ssp. japonica HOM05D004936 ORTHO05D005977 1.2e-46 190.3 162 56.8
Aa31LG7G2800 Aethionema arabicum HOM05D004936 ORTHO05D005977 1.5e-46 189.9 159 56.6
Hund18959 Selenicereus undatus HOM05D004936 ORTHO05D005977 1.5e-46 189.9 146 62.3
GSVIVG01024670001 Vitis vinifera HOM05D004936 ORTHO05D005977 1.5e-46 189.9 160 58.1
Zm00001eb013690 Zea mays HOM05D004936 ORTHO05D005977 1.5e-46 189.9 162 56.2
Manes.03G100200 Manihot esculenta HOM05D004936 ORTHO05D005977 2.0e-46 189.5 160 58.8
Potri.001G281200 Populus trichocarpa HOM05D004936 ORTHO05D005977 2.0e-46 189.5 154 58.4
Gohir.D12G270000 Gossypium hirsutum HOM05D004936 ORTHO05D005977 2.6e-46 189.1 145 61.4
Gorai.008G290300 Gossypium raimondii HOM05D004936 ORTHO05D005977 2.6e-46 189.1 145 61.4
Manes.15G096000 Manihot esculenta HOM05D004936 ORTHO05D005977 5.8e-46 188.0 161 57.1
AagrBONN_evm.TU.Sc2ySwM_344.4538 Anthoceros agrestis HOM05D004936 ORTHO05D005977 7.6e-46 187.6 162 61.1
Duzib068G0913 Durio zibethinus HOM05D004936 ORTHO05D005977 7.6e-46 187.6 162 59.3
RcHm_v2.0_Chr5g0071211 Rosa chinensis HOM05D004936 ORTHO05D005977 7.6e-46 187.6 146 60.3
Atru.chr3.4141 Acer truncatum HOM05D004936 ORTHO05D005977 9.9e-46 187.2 146 60.3
arahy.Tifrunner.gnm1.ann1.K3S5GW Arachis hypogaea HOM05D004936 ORTHO05D005977 9.9e-46 187.2 146 64.4
arahy.Tifrunner.gnm1.ann1.Z0D2FZ Arachis hypogaea HOM05D004936 ORTHO05D005977 9.9e-46 187.2 146 64.4
FAN25G3861 Fragaria x ananassa HOM05D004936 ORTHO05D005977 9.9e-46 187.2 143 60.8
Gohir.A12G269500 Gossypium hirsutum HOM05D004936 ORTHO05D005977 9.9e-46 187.2 160 57.5
Hma1.2p1_0146F.1_g065480 Hydrangea macrophylla HOM05D004936 ORTHO05D005977 9.9e-46 187.2 146 62.3
BcaB03g12974 Brassica carinata HOM05D004936 ORTHO05D005977 1.3e-45 186.8 165 55.2
BcaNung05441 Brassica carinata HOM05D004936 ORTHO05D005977 1.3e-45 186.8 165 55.2
COL.COLO4_31393 Corchorus olitorius HOM05D004936 ORTHO05D005977 1.3e-45 186.8 145 60.7
BcaC07g38896 Brassica carinata HOM05D004936 ORTHO05D005977 1.7e-45 186.4 160 56.2
C08p18520 Brassica napus HOM05D004936 ORTHO05D005977 1.7e-45 186.4 160 56.2
BolC8t49484H Brassica oleracea HOM05D004936 ORTHO05D005977 1.7e-45 186.4 160 56.2
EL10Ac7g15900 Beta vulgaris HOM05D004936 ORTHO05D005977 3.8e-45 185.3 166 56.0
PSO832G3733 Papaver somniferum HOM05D004936 ORTHO05D005977 4.9e-45 184.9 146 61.0
Potri.009G076400 Populus trichocarpa HOM05D004936 ORTHO05D005977 4.9e-45 184.9 166 56.6
A08p30450 Brassica napus HOM05D004936 ORTHO05D005977 6.4e-45 184.5 160 55.6
BraA08t34977Z Brassica rapa HOM05D004936 ORTHO05D005977 6.4e-45 184.5 160 55.6
Rhsim13G0065400 Rhododendron simsii HOM05D004936 ORTHO05D005977 6.4e-45 184.5 166 57.2
AUR62009688 Chenopodium quinoa HOM05D004936 ORTHO05D005977 8.4e-45 184.1 145 60.0
CiPaw.13G071600 Carya illinoinensis HOM05D004936 ORTHO05D005977 2.4e-44 182.6 166 58.4
HanXRQChr14g0439861 Helianthus annuus HOM05D004936 ORTHO05D005977 3.2e-44 182.2 161 55.3
PSO210G4578 Papaver somniferum HOM05D004936 ORTHO05D005977 3.2e-44 182.2 164 56.7
unitig_736.g22495 Utricularia gibba HOM05D004936 ORTHO05D005977 3.2e-44 182.2 160 56.9
Ciclev10029395m.g Citrus clementina HOM05D004936 ORTHO05D005977 7.1e-44 181.0 144 59.7
Migut.G00331 Erythranthe guttata HOM05D004936 ORTHO05D005977 7.1e-44 181.0 160 53.8
CARHR018890 Cardamine hirsuta HOM05D004936 ORTHO05D005977 1.6e-43 179.9 157 54.8
AUR62001892 Chenopodium quinoa HOM05D004936 ORTHO05D005977 1.6e-43 179.9 143 60.1
Medtr2g070380 Medicago truncatula HOM05D004936 ORTHO05D005977 1.6e-43 179.9 146 59.6
Medtr4g077950 Medicago truncatula HOM05D004936 ORTHO05D005977 1.6e-43 179.9 146 59.6
SalBow5G1663 Salvia bowleyana HOM05D004936 ORTHO05D005977 2.7e-43 179.1 145 58.6
Duzib084G0838 Durio zibethinus HOM05D004936 ORTHO05D005977 4.6e-43 178.3 159 59.1
ECA238G2024 Erigeron canadensis HOM05D004936 ORTHO05D005977 6.0e-43 177.9 162 56.2
Lalb_Chr03g0024401 Lupinus albus HOM05D004936 ORTHO05D005977 1.0e-42 177.2 146 60.3
Prupe.6G051100 Prunus persica HOM05D004936 ORTHO05D005977 5.1e-42 174.9 146 61.0
CANSAT54G2258 Cannabis sativa HOM05D004936 ORTHO05D005977 8.7e-42 174.1 146 58.9
DCAR_018221 Daucus carota HOM05D004936 ORTHO05D005977 8.7e-42 174.1 151 58.9
Glyma.12G017200 Glycine max HOM05D004936 ORTHO05D005977 8.7e-42 174.1 146 61.6
QL01p039898 Quercus lobata HOM05D004936 ORTHO05D005977 8.7e-42 174.1 160 56.2
Actinidia23210 Actinidia chinensis HOM05D004936 ORTHO05D005977 1.9e-41 172.9 145 60.7
Phvul.011G019700 Phaseolus vulgaris HOM05D004936 ORTHO05D005977 1.9e-41 172.9 146 60.3
Sed0012478 Sechium edule HOM05D004936 ORTHO05D005977 3.3e-41 172.2 171 56.7
Glyma.09G223900 Glycine max HOM05D004936 ORTHO05D005977 4.3e-41 171.8 146 61.0
VMungo1127G0545 Vigna mungo HOM05D004936 ORTHO05D005977 4.3e-41 171.8 146 59.6
TWI79G0082 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 7.4e-41 171.0 161 57.1
HPP92_003695 Vanilla planifolia HOM05D004936 ORTHO05D005977 9.6e-41 170.6 146 58.2
TWI75G1184 Tripterygium wilfordii HOM05D004936 ORTHO05D005977 1.3e-40 170.2 161 57.1
PGR044G1703 Punica granatum HOM05D004936 ORTHO05D005977 1.6e-40 169.9 146 59.6
Thecc.03G057900 Theobroma cacao HOM05D004936 ORTHO05D005977 4.8e-40 168.3 160 56.2
vmacro02929 Vaccinium macrocarpon HOM05D004936 ORTHO05D005977 4.8e-40 168.3 211 45.5
CiPaw.14G055600 Carya illinoinensis HOM05D004936 ORTHO05D005977 8.2e-40 167.5 143 60.1
Dinv28681 Davidia involucrata HOM05D004936 ORTHO05D005977 8.2e-40 167.5 160 56.2
Lj2A1091T51 Lonicera japonica HOM05D004936 ORTHO05D005977 1.4e-39 166.8 146 56.8
Lsat_1_v5_gn_2_60241 Lactuca sativa HOM05D004936 ORTHO05D005977 1.8e-39 166.4 145 55.2
Lj3g0015200 Lotus japonicus HOM05D004936 ORTHO05D005977 2.4e-39 166.0 160 55.0
SGA_v2.0_scaffold39G15257 Striga asiatica HOM05D004936 ORTHO05D005977 4.0e-39 165.2 146 58.2
Cc05_g03440 Coffea canephora HOM05D004936 ORTHO05D005977 9.0e-39 164.1 144 57.6
Peaxi162Scf00624g00914 Petunia axillaris HOM05D004936 ORTHO05D005977 9.0e-39 164.1 143 58.0
Psat7g170640 Pisum sativum HOM05D004936 ORTHO05D005977 9.0e-39 164.1 146 57.5
Solyc11g068980.2 Solanum lycopersicum HOM05D004936 ORTHO05D005977 9.0e-39 164.1 146 56.8
Sopen11g027690 Solanum pennellii HOM05D004936 ORTHO05D005977 9.0e-39 164.1 146 56.8
MSTRG.4026 Avicennia marina HOM05D004936 ORTHO05D005977 1.2e-38 163.7 146 57.5
PGSC0003DMG402019636 Solanum tuberosum HOM05D004936 ORTHO05D005977 1.5e-38 163.3 146 56.2
Nitab4.5_0000158g0090 Nicotiana tabacum HOM05D004936 ORTHO05D005977 7.6e-38 161.0 146 56.2
Nitab4.5_0002493g0030 Nicotiana tabacum HOM05D004936 ORTHO05D005977 7.6e-38 161.0 158 55.1
MELO3C020507.2 Cucumis melo HOM05D004936 ORTHO05D005977 1.0e-37 160.6 147 56.5
CsaV3_1G036620 Cucumis sativus L. HOM05D004936 ORTHO05D005977 1.7e-37 159.8 146 54.1
TPR.G39486 Trifolium pratense HOM05D004936 ORTHO05D005977 1.7e-37 159.8 146 56.2
Nn2g10980 Nelumbo nucifera HOM05D004936 ORTHO05D005977 2.9e-37 159.1 150 56.0
Nitab4.5_0000570g0350 Nicotiana tabacum HOM05D004936 ORTHO05D005977 2.9e-37 159.1 166 52.4
MD11G1063700 Malus domestica HOM05D004936 ORTHO05D005977 1.9e-36 156.4 137 56.9
Cpa.g.sc2.381 Carica papaya HOM05D004936 ORTHO05D005977 4.6e-35 151.8 126 63.5
CBR_g19040 Chara braunii HOM05D004936 ORTHO05D005977 4.6e-35 151.8 154 50.6
Sc12g0000320 Simmondsia chinensis HOM05D004936 ORTHO05D005977 1.1e-33 147.1 118 59.3
Sabra16G0174900 Salix brachista HOM05D004936 ORTHO05D005977 3.3e-33 145.6 135 51.9
COL.COLO4_04994 Corchorus olitorius HOM05D000034 ORTHO05D000037 4.8e-32 141.7 133 53.4
SEGI_35825 Sequoiadendron giganteum HOM05D004936 ORTHO05D005977 6.3e-32 141.4 111 63.1
ClCG03G000300 Citrullus lanatus HOM05D000089 ORTHO05D000104 3.1e-31 139.0 126 57.9
ATR0691G226 Amborella trichopoda HOM05D004936 ORTHO05D005977 1.9e-28 129.8 135 53.3
DCAR_027925 Daucus carota HOM05D004936 ORTHO05D005977 5.5e-28 128.3 117 54.7
MD03G1061000 Malus domestica HOM05D004936 ORTHO05D005977 5.5e-28 128.3 138 50.0
Oeu011630.1 Olea europaea HOM05D004936 ORTHO05D005977 6.1e-27 124.8 129 53.5
Cfa011755 Carpinus fangiana HOM05D000089 ORTHO05D000104 1.8e-26 123.2 117 53.0
CAN.G3648.1 Capsicum annuum HOM05D004936 ORTHO05D005977 3.9e-26 122.1 117 53.0
CAN.G689.18 Capsicum annuum HOM05D004936 ORTHO05D005977 3.9e-26 122.1 117 53.0
Ca_18959_v3 Cicer arietinum L. HOM05D000232 ORTHO05D000145 3.9e-26 122.1 117 53.8
Haze_24392 Corylus avellana HOM05D004936 ORTHO05D005977 5.1e-26 121.7 140 47.9
Cre01.g021050 Chlamydomonas reinhardtii HOM05D004936 ORTHO05D005977 6.7e-26 121.3 147 44.9
Zm00001eb130910 Zea mays HOM05D004936 ORTHO05D005977 6.7e-26 121.3 96 59.4
Nitab4.5_0003484g0120 Nicotiana tabacum HOM05D004936 ORTHO05D005977 1.1e-25 120.6 117 53.0
Zm00001eb223780 Zea mays HOM05D004936 ORTHO05D005977 4.3e-25 118.6 96 57.3
Oeu023392.2 Olea europaea HOM05D004936 ORTHO05D005977 1.3e-24 117.1 117 52.1
Nn5g31489 Nelumbo nucifera HOM05D004936 ORTHO05D005977 6.3e-24 114.8 121 52.1
Nn6g34585 Nelumbo nucifera HOM05D004936 ORTHO05D005977 6.3e-24 114.8 121 52.1
PRCOL_00001564 Prasinoderma coloniale HOM05D004936 ORTHO05D005977 1.1e-23 114.0 152 40.8
Dinv09657 Davidia involucrata HOM05D004936 ORTHO05D005977 3.1e-23 112.5 81 67.9
Lj1A128T43 Lonicera japonica HOM05D004936 ORTHO05D005977 3.1e-23 112.5 134 47.0
AT3G10110 Arabidopsis thaliana HOM05D004936 ORTHO05D005977 7.7e-22 107.8 109 48.6
TPR.G26511 Trifolium pratense HOM05D004936 ORTHO05D005977 1.0e-21 107.5 96 54.2
Sed0020346 Sechium edule HOM05D004936 ORTHO05D005977 2.5e-20 102.8 151 45.7
MD11G1064200 Malus domestica HOM05D004936 ORTHO05D005977 4.2e-20 102.1 64 73.4
MCO05G723 Micromonas commoda HOM05D004936 ORTHO05D005977 6.1e-19 98.2 146 39.0
CANSAT21G2196 Cannabis sativa HOM05D004936 ORTHO05D005977 5.1e-18 95.1 89 49.4
Cfa023961 Carpinus fangiana HOM05D004936 ORTHO05D005977 4.4e-17 92.0 137 38.0
TAR633G2185 Trochodendron aralioides HOM05D004936 ORTHO05D005977 3.2e-12 75.9 89 47.2
MD11G1064100 Malus domestica HOM05D004936 ORTHO05D005977 8.8e-10 67.8 81 43.2
Nitab4.5_0001270g0210 Nicotiana tabacum HOM05D004936 ORTHO05D005977 4.8e-08 62.0 86 40.7
Pp3c24_12690 Physcomitrium patens HOM05D004024 ORTHO05D004639 4.1e-07 58.9 150 32.0


User provided reference genes

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