Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_15420 Physcomitrium patens HOM05D003976 ORTHO05D004711 0.0e+00 2019.6 1063 100.0
Pp3c3_21120 Physcomitrium patens HOM05D003976 ORTHO05D004711 0.0e+00 1541.6 1078 76.6
Pp3c16_24260 Physcomitrium patens HOM05D003976 ORTHO05D004711 0.0e+00 1266.9 1102 63.5
Mapoly0170s0008 Marchantia polymorpha HOM05D003976 ORTHO05D004711 0.0e+00 1205.3 1096 60.2
SEGI_27589 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 1.4e-292 1010.0 1084 52.3
TAR633G0511 Trochodendron aralioides HOM05D003976 ORTHO05D004711 2.6e-267 926.0 1075 48.4
Aqoxy1G01141 Aquilegia oxysepala HOM05D003976 ORTHO05D004711 8.3e-266 921.0 1086 49.0
SMO172G0221 Selaginella moellendorffii HOM05D003976 ORTHO05D004711 7.0e-265 917.9 1061 50.6
Oeu007408.1 Olea europaea HOM05D003976 ORTHO05D004711 3.0e-263 912.5 1080 48.6
PSO063G6915 Papaver somniferum HOM05D003976 ORTHO05D004711 3.0e-263 912.5 1070 48.5
PSO339G0981 Papaver somniferum HOM05D003976 ORTHO05D004711 1.2e-261 907.1 1071 48.3
Nn4g25176 Nelumbo nucifera HOM05D003976 ORTHO05D004711 3.6e-261 905.6 1079 47.5
Dinv31232 Davidia involucrata HOM05D003976 ORTHO05D004711 2.0e-259 899.8 1077 47.8
PGR044G0607 Punica granatum HOM05D003976 ORTHO05D004711 2.0e-259 899.8 1082 48.2
Prupe.2G208700 Prunus persica HOM05D003976 ORTHO05D004711 2.2e-258 896.3 1076 47.4
Cfa001691 Carpinus fangiana HOM05D003976 ORTHO05D004711 3.7e-258 895.6 1072 48.5
Glyma.10G207900 Glycine max HOM05D003976 ORTHO05D004711 1.4e-257 893.6 1075 48.3
CSS0009675 Camellia sinensis var. sinensis HOM05D003976 ORTHO05D004711 2.4e-257 892.9 1086 47.4
TPR.G32679 Trifolium pratense HOM05D003976 ORTHO05D004711 3.2e-257 892.5 1075 47.7
GSVIVG01016219001 Vitis vinifera HOM05D003976 ORTHO05D004711 4.1e-257 892.1 1086 47.1
RcHm_v2.0_Chr1g0362571 Rosa chinensis HOM05D003976 ORTHO05D004711 7.1e-257 891.3 1077 47.6
TWI63G1397 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 9.2e-257 891.0 1087 47.3
Ca_00795_v3 Cicer arietinum L. HOM05D003976 ORTHO05D004711 1.6e-256 890.2 1076 48.0
CsaV3_6G036710 Cucumis sativus L. HOM05D003976 ORTHO05D004711 4.6e-256 888.6 1080 47.6
MD01G1103100 Malus domestica HOM05D003976 ORTHO05D004711 7.8e-256 887.9 1077 47.4
Sed0018764 Sechium edule HOM05D003976 ORTHO05D004711 1.7e-255 886.7 1080 47.0
Medtr5g017640 Medicago truncatula HOM05D003976 ORTHO05D004711 2.3e-255 886.3 1072 47.5
Potri.010G227100 Populus trichocarpa HOM05D003976 ORTHO05D004711 5.1e-255 885.2 1070 47.6
Duzib114G0598 Durio zibethinus HOM05D003976 ORTHO05D004711 6.6e-255 884.8 1074 47.3
Glyma.20G182800 Glycine max HOM05D003976 ORTHO05D004711 6.6e-255 884.8 1087 48.0
CiPaw.01G268500 Carya illinoinensis HOM05D003976 ORTHO05D004711 8.6e-255 884.4 1088 47.2
Migut.F01955 Erythranthe guttata HOM05D003976 ORTHO05D004711 8.6e-255 884.4 1086 47.1
Lj5g0000763 Lotus japonicus HOM05D003976 ORTHO05D004711 1.5e-254 883.6 1078 47.6
Thecc.10G083800 Theobroma cacao HOM05D003976 ORTHO05D004711 1.9e-254 883.2 1080 47.3
Phvul.007G098800 Phaseolus vulgaris HOM05D003976 ORTHO05D004711 4.3e-254 882.1 1074 47.7
Medtr8g104855 Medicago truncatula HOM05D003976 ORTHO05D004711 7.3e-254 881.3 1084 47.5
FvH4_7g18760 Fragaria vesca HOM05D003976 ORTHO05D004711 6.2e-253 878.2 1080 46.9
VMungo0251G3371 Vigna mungo HOM05D003976 ORTHO05D004711 2.3e-252 876.3 1082 47.2
TWI15G0187 Tripterygium wilfordii HOM05D003976 ORTHO05D004711 4.0e-252 875.5 1088 47.3
Gohir.D04G001800 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.5e-251 873.6 1082 46.9
Sopen11g004150 Solanum pennellii HOM05D003976 ORTHO05D004711 7.6e-251 871.3 1078 46.8
Gohir.A05G414300 Gossypium hirsutum HOM05D003976 ORTHO05D004711 2.9e-250 869.4 1079 46.9
Potri.008G035300 Populus trichocarpa HOM05D003976 ORTHO05D004711 3.7e-250 869.0 1075 46.6
Gorai.012G002900 Gossypium raimondii HOM05D003976 ORTHO05D004711 7.1e-249 864.8 1081 46.6
Lalb_Chr06g0170321 Lupinus albus HOM05D003976 ORTHO05D004711 7.1e-249 864.8 1076 46.4
CANSAT56G1655 Cannabis sativa HOM05D003976 ORTHO05D004711 3.5e-248 862.4 1074 46.6
SalBow4G0398 Salvia bowleyana HOM05D003976 ORTHO05D004711 1.0e-247 860.9 1098 46.2
Solyc11g008340.3 Solanum lycopersicum HOM05D003976 ORTHO05D004711 1.7e-247 860.1 1079 46.8
FAN06G0006 Fragaria x ananassa HOM05D003976 ORTHO05D004711 5.1e-247 858.6 1080 46.6
MSTRG.27486 Avicennia marina HOM05D003976 ORTHO05D004711 6.6e-247 858.2 1082 46.3
FAN03G2922 Fragaria x ananassa HOM05D003976 ORTHO05D004711 8.6e-247 857.8 1078 46.6
Atru.chr12.845 Acer truncatum HOM05D003976 ORTHO05D004711 1.1e-246 857.4 1050 47.5
Sc06g0007810 Simmondsia chinensis HOM05D003976 ORTHO05D004711 1.5e-246 857.1 1073 45.6
DCAR_019085 Daucus carota HOM05D003976 ORTHO05D004711 5.6e-246 855.1 1078 46.6
Manes.01G054600 Manihot esculenta HOM05D003976 ORTHO05D004711 1.6e-245 853.6 1079 45.8
MBI18_g27471_MAGBIO Magnolia biondii HOM05D003976 ORTHO05D004711 4.0e-244 849.0 1002 48.5
HanXRQChr14g0456581 Helianthus annuus HOM05D003976 ORTHO05D004711 2.9e-242 842.8 1068 45.5
Nitab4.5_0001450g0090 Nicotiana tabacum HOM05D003976 ORTHO05D004711 3.8e-242 842.4 1152 44.8
MD07G1169800 Malus domestica HOM05D003976 ORTHO05D004711 8.4e-242 841.3 1030 46.7
Nn3g18724 Nelumbo nucifera HOM05D003976 ORTHO05D004711 8.4e-242 841.3 1076 45.4
THA.LOC104826898 Tarenaya hassleriana HOM05D003976 ORTHO05D004711 8.4e-242 841.3 1078 44.8
Os08g0318500 Oryza sativa ssp. japonica HOM05D003976 ORTHO05D004711 3.2e-241 839.3 1076 44.3
Zm00001eb330040 Zea mays HOM05D003976 ORTHO05D004711 7.1e-241 838.2 1074 44.9
HanXRQChr05g0161261 Helianthus annuus HOM05D003976 ORTHO05D004711 1.6e-240 837.0 1069 44.9
ECA238G0457 Erigeron canadensis HOM05D003976 ORTHO05D004711 6.0e-240 835.1 1073 44.7
HanXRQChr14g0455711 Helianthus annuus HOM05D003976 ORTHO05D004711 7.8e-240 834.7 1069 45.3
Carub.0003s0956 Capsella rubella HOM05D003976 ORTHO05D004711 1.4e-236 823.9 1085 44.1
HPP92_022853 Vanilla planifolia HOM05D003976 ORTHO05D004711 1.8e-236 823.5 1104 44.3
AT3G10380 Arabidopsis thaliana HOM05D003976 ORTHO05D004711 3.1e-236 822.8 1081 44.1
CARHR084860 Cardamine hirsuta HOM05D003976 ORTHO05D004711 4.0e-236 822.4 1077 44.0
Ciclev10030617m.g Citrus clementina HOM05D003976 ORTHO05D004711 2.6e-235 819.7 1074 45.4
Sp3g08650 Schrenkiella parvula HOM05D003976 ORTHO05D004711 2.6e-235 819.7 1079 43.6
Nitab4.5_0001659g0180 Nicotiana tabacum HOM05D003976 ORTHO05D004711 9.9e-235 817.8 1118 44.6
AL3G21710 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 2.9e-234 816.2 1079 44.3
C03p44100 Brassica napus HOM05D003976 ORTHO05D004711 4.9e-234 815.5 1097 43.4
Psat7g009400 Pisum sativum HOM05D003976 ORTHO05D004711 7.1e-233 811.6 1002 47.0
A05p38770 Brassica napus HOM05D003976 ORTHO05D004711 3.5e-232 809.3 1084 43.6
BolC5t34435H Brassica oleracea HOM05D003976 ORTHO05D004711 1.5e-230 803.9 1094 43.4
C05p57780 Brassica napus HOM05D003976 ORTHO05D004711 1.9e-230 803.5 1098 43.3
BcaB04g21214 Brassica carinata HOM05D003976 ORTHO05D004711 2.5e-230 803.1 1074 43.5
A01p41880 Brassica napus HOM05D003976 ORTHO05D004711 3.3e-230 802.7 1078 43.5
BolC3t16685H Brassica oleracea HOM05D003976 ORTHO05D004711 7.4e-230 801.6 1097 43.1
MELO3C019825.2 Cucumis melo HOM05D003976 ORTHO05D004711 1.6e-229 800.4 1095 44.4
Lj2C20G12 Lonicera japonica HOM05D003976 ORTHO05D004711 1.8e-228 797.0 1090 43.9
BolC1t05404H Brassica oleracea HOM05D003976 ORTHO05D004711 4.0e-228 795.8 1114 42.6
CDE10G1014 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 4.0e-228 795.8 1012 45.5
A03p36500 Brassica napus HOM05D003976 ORTHO05D004711 1.5e-227 793.9 1097 43.0
BraA01t04258Z Brassica rapa HOM05D003976 ORTHO05D004711 3.4e-227 792.7 1115 42.2
Thhalv10019960m.g Eutrema salsugineum HOM05D003976 ORTHO05D004711 3.4e-227 792.7 1089 42.9
BcaC09g48100 Brassica carinata HOM05D003976 ORTHO05D004711 3.2e-225 786.2 1070 43.6
AUR62023345 Chenopodium quinoa HOM05D003976 ORTHO05D004711 4.6e-224 782.3 1080 44.5
BraA03t12817Z Brassica rapa HOM05D003976 ORTHO05D004711 1.3e-223 780.8 1097 42.8
BcaC05g29471 Brassica carinata HOM05D003976 ORTHO05D004711 2.1e-221 773.5 1071 42.7
Sabra08G0023600 Salix brachista HOM05D003976 ORTHO05D004711 3.7e-221 772.7 1093 43.2
AUR62013811 Chenopodium quinoa HOM05D003976 ORTHO05D004711 1.9e-217 760.4 1103 43.2
Sabra10G0175200 Salix brachista HOM05D003976 ORTHO05D004711 7.1e-217 758.4 1171 40.9
Oeu033874.1 Olea europaea HOM05D003976 ORTHO05D004711 9.3e-217 758.1 950 46.8
ClCG08G007720 Citrullus lanatus HOM05D003976 ORTHO05D004711 2.1e-216 756.9 1065 44.5
AagrBONN_evm.TU.Sc2ySwM_228.4637 Anthoceros agrestis HOM05D003976 ORTHO05D004711 2.3e-215 753.4 806 53.8
Aa31LG3G2960 Aethionema arabicum HOM05D003976 ORTHO05D004711 1.8e-212 743.8 1087 41.3
Lsat_1_v5_gn_2_113061 Lactuca sativa HOM05D003976 ORTHO05D004711 9.0e-212 741.5 1080 41.9
FAN01G1125 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.2e-208 731.1 1078 42.2
Haze_16845 Corylus avellana HOM05D003976 ORTHO05D004711 1.6e-208 730.7 1122 42.3
ATR0730G009 Amborella trichopoda HOM05D003976 ORTHO05D004711 4.6e-208 729.2 921 47.2
EL10Ac1g00696 Beta vulgaris HOM05D003976 ORTHO05D004711 1.6e-205 720.7 1162 40.6
unitig_46.g18603 Utricularia gibba HOM05D003976 ORTHO05D004711 8.2e-205 718.4 1084 40.7
FAN06G1302 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.3e-202 711.1 1109 40.8
CBR_g30687 Chara braunii HOM05D003976 ORTHO05D004711 4.1e-196 689.5 1232 37.4
Eucgr.K02187 Eucalyptus grandis HOM05D003976 ORTHO05D004711 6.9e-196 688.7 880 46.6
FAN10G1353 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.1e-193 681.4 1081 40.5
FAN10G3044 Fragaria x ananassa HOM05D003976 ORTHO05D004711 1.2e-192 677.9 1067 40.4
arahy.Tifrunner.gnm1.ann1.9SI57B Arachis hypogaea HOM05D003976 ORTHO05D004711 3.8e-186 656.4 1074 40.2
SGA_v2.0_scaffold100G29552 Striga asiatica HOM05D003976 ORTHO05D004711 6.1e-184 649.0 1263 36.5
Hma1.2p1_0384F.1_g140840 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 4.2e-177 626.3 747 47.8
Gohir.D10G210600 Gossypium hirsutum HOM05D003976 ORTHO05D004711 6.8e-175 619.0 919 41.3
CiPaw.02G172200 Carya illinoinensis HOM05D003976 ORTHO05D004711 1.2e-158 565.1 640 48.8
Gorai.011G236100 Gossypium raimondii HOM05D003976 ORTHO05D004711 1.3e-157 561.6 924 39.7
QL08p054317 Quercus lobata HOM05D003976 ORTHO05D004711 4.6e-147 526.6 718 44.8
Actinidia18607 Actinidia chinensis HOM05D003976 ORTHO05D004711 4.9e-133 479.9 783 38.7
Gohir.A10G202400 Gossypium hirsutum HOM05D003976 ORTHO05D004711 1.3e-125 455.3 783 38.2
Peaxi162Scf00145g01215 Petunia axillaris HOM05D003976 ORTHO05D004711 2.7e-123 447.6 532 47.4
COL.COLO4_34215 Corchorus olitorius HOM05D003976 ORTHO05D004711 4.0e-111 407.1 545 45.7
BraA05t22668Z Brassica rapa HOM05D003976 ORTHO05D004711 7.9e-107 392.9 551 43.0
BraA05t22669Z Brassica rapa HOM05D003976 ORTHO05D004711 1.1e-103 382.5 441 46.9
arahy.Tifrunner.gnm1.ann1.WBL645 Arachis hypogaea HOM05D003976 ORTHO05D004711 4.0e-103 380.6 569 42.4
COL.COLO4_34214 Corchorus olitorius HOM05D003976 ORTHO05D004711 1.9e-100 371.7 543 42.2
Peaxi162Scf00145g01214 Petunia axillaris HOM05D003976 ORTHO05D004711 2.3e-98 364.8 547 43.1
Hund17145 Selenicereus undatus HOM05D003976 ORTHO05D004711 7.4e-97 359.8 716 34.4
CAN.G321.62 Capsicum annuum HOM05D003976 ORTHO05D004711 2.2e-93 348.2 394 50.8
CiPaw.02G172100 Carya illinoinensis HOM05D003976 ORTHO05D004711 4.7e-83 313.9 351 50.4
Lalb_Chr21g0313681 Lupinus albus HOM05D003976 ORTHO05D004711 1.3e-77 295.8 362 45.0
vmacro00386 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 6.5e-77 293.5 839 30.4
CDE10G0060 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 8.8e-74 283.1 392 42.6
Rhsim03G0115800 Rhododendron simsii HOM05D003976 ORTHO05D004711 3.6e-67 261.2 355 42.8
Cpa.g.sc53.132 Carica papaya HOM05D003976 ORTHO05D004711 1.5e-65 255.8 331 44.7
QL08p054329 Quercus lobata HOM05D003976 ORTHO05D004711 1.5e-65 255.8 284 48.6
vmacro00383 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 5.7e-65 253.8 373 41.6
Lalb_Chr21g0313551 Lupinus albus HOM05D003976 ORTHO05D004711 2.8e-64 251.5 283 46.6
Cc02_g10920 Coffea canephora HOM05D003976 ORTHO05D004711 1.5e-52 212.6 204 52.5
CDE10G0443 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 4.7e-51 207.6 282 44.7
BcaNung07314 Brassica carinata HOM05D003976 ORTHO05D004711 1.3e-45 189.5 167 55.7
VMungo0720G2709 Vigna mungo HOM05D003976 ORTHO05D004711 1.0e-42 179.9 158 56.3
PSO478G0690 Papaver somniferum HOM05D003976 ORTHO05D004711 5.8e-41 174.1 131 66.4
Cpa.g.sc53.134 Carica papaya HOM05D003976 ORTHO05D004711 2.3e-37 162.2 345 37.4
SEGI_25267 Sequoiadendron giganteum HOM05D003976 ORTHO05D004711 2.1e-35 155.6 128 58.6
ATR0730G060 Amborella trichopoda HOM05D003976 ORTHO05D004711 1.8e-34 152.5 126 60.3
CDE10G0301 Ceratophyllum demersum HOM05D003976 ORTHO05D004711 2.3e-34 152.1 162 46.3
HPP92_026132 Vanilla planifolia HOM05D003976 ORTHO05D004711 6.4e-32 144.1 133 54.1
Cre01.g003050 Chlamydomonas reinhardtii HOM05D003976 ORTHO05D004711 2.7e-30 138.7 210 35.7
vmacro00384 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 1.2e-27 129.8 108 57.4
SHI08886 Sapria himalayana HOM05D000002 ORTHO05D000001 7.8e-22 110.5 92 62.0
TPR.G33031 Trifolium pratense HOM05D003976 ORTHO05D004711 1.0e-21 110.2 131 45.0
AL491U10010 Arabidopsis lyrata HOM05D003976 ORTHO05D004711 7.6e-17 94.0 100 45.0
vmacro00385 Vaccinium macrocarpon HOM05D003976 ORTHO05D004711 4.1e-15 88.2 86 52.3
Actinidia18608 Actinidia chinensis HOM05D003976 ORTHO05D004711 2.7e-14 85.5 70 55.7
CAN.G796.1 Capsicum annuum HOM05D003976 ORTHO05D004711 2.7e-14 85.5 170 38.8
Gohir.D10G210566 Gossypium hirsutum HOM05D003976 ORTHO05D004711 7.8e-14 84.0 76 48.7
Psat7g009440 Pisum sativum HOM05D003976 ORTHO05D004711 1.0e-13 83.6 71 52.1
SHI08885 Sapria himalayana HOM05D000002 ORTHO05D000001 9.6e-12 77.0 81 43.2
TPR.G28835 Trifolium pratense HOM05D003976 ORTHO05D004711 1.4e-10 73.2 71 45.1
Cc02_g10910 Coffea canephora HOM05D003976 ORTHO05D004711 2.6e-09 68.9 118 36.4
Hma1.2p1_0384F.1_g140740 Hydrangea macrophylla HOM05D003976 ORTHO05D004711 7.6e-09 67.4 91 44.0
Prupe.5G231200 Prunus persica HOM05D003976 ORTHO05D004711 6.4e-08 64.3 99 39.4
Aa31LG6G7350 Aethionema arabicum HOM05D003976 ORTHO05D004711 1.2e-06 60.1 68 48.5
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 6.0e-06 57.8 86 36.0


User provided reference genes

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