Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_13900 Physcomitrium patens HOM05D006942 ORTHO05D008737 2.3e-179 632.1 318 100.0
Pp3c4_7620 Physcomitrium patens HOM05D006942 ORTHO05D008737 5.8e-130 468.0 319 74.0
AagrBONN_evm.TU.Sc2ySwM_344.2088 Anthoceros agrestis HOM05D006942 ORTHO05D008737 4.2e-80 302.4 233 64.4
Mapoly0043s0076 Marchantia polymorpha HOM05D006942 ORTHO05D008737 3.1e-75 286.2 245 57.6
SMO364G0530 Selaginella moellendorffii HOM05D006942 ORTHO05D008737 5.7e-61 238.8 186 58.1
MD12G1002500 Malus domestica HOM05D006942 ORTHO05D008737 4.5e-58 229.2 188 56.9
Nn7g35832 Nelumbo nucifera HOM05D006942 ORTHO05D008737 2.9e-57 226.5 188 56.9
Thhalv10008350m.g Eutrema salsugineum HOM05D006942 ORTHO05D008737 6.5e-57 225.3 181 59.1
FvH4_3g25250 Fragaria vesca HOM05D006942 ORTHO05D008737 6.5e-57 225.3 195 55.4
ATR0697G165 Amborella trichopoda HOM05D006942 ORTHO05D008737 8.5e-57 224.9 190 56.8
PGR042G3330 Punica granatum HOM05D006942 ORTHO05D008737 8.5e-57 224.9 188 56.4
AL1G64670 Arabidopsis lyrata HOM05D006942 ORTHO05D008737 1.1e-56 224.6 192 56.8
Duzib177G1195 Durio zibethinus HOM05D006942 ORTHO05D008737 1.9e-56 223.8 196 54.6
Rhsim04G0087000 Rhododendron simsii HOM05D006942 ORTHO05D008737 1.9e-56 223.8 192 56.2
Ciclev10021582m.g Citrus clementina HOM05D006942 ORTHO05D008737 2.5e-56 223.4 191 55.5
TAR633G0669 Trochodendron aralioides HOM05D006942 ORTHO05D008737 4.2e-56 222.6 190 55.3
Nn2g15884 Nelumbo nucifera HOM05D002140 ORTHO05D008737 5.5e-56 222.2 190 56.8
RcHm_v2.0_Chr5g0046891 Rosa chinensis HOM05D006942 ORTHO05D008737 5.5e-56 222.2 184 56.5
SpUn0001_1050 Schrenkiella parvula HOM05D006942 ORTHO05D008737 5.5e-56 222.2 188 55.9
AT2G23840 Arabidopsis thaliana HOM05D006942 ORTHO05D008737 7.2e-56 221.9 192 55.2
FAN21G2944 Fragaria x ananassa HOM05D006942 ORTHO05D008737 7.2e-56 221.9 186 56.5
FAN16G3006 Fragaria x ananassa HOM05D006942 ORTHO05D008737 9.4e-56 221.5 182 57.1
COL.COLO4_13617 Corchorus olitorius HOM05D006942 ORTHO05D008737 1.6e-55 220.7 196 53.6
Gohir.D13G109500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 1.6e-55 220.7 260 44.6
Gorai.013G123100 Gossypium raimondii HOM05D006942 ORTHO05D008737 1.6e-55 220.7 260 44.6
Lalb_Chr24g0403081 Lupinus albus HOM05D006942 ORTHO05D008737 1.6e-55 220.7 215 52.1
GSVIVG01033386001 Vitis vinifera HOM05D006942 ORTHO05D008737 1.6e-55 220.7 182 57.1
Gorai.007G287900 Gossypium raimondii HOM05D006942 ORTHO05D008737 2.1e-55 220.3 241 50.2
BcaB07g31088 Brassica carinata HOM05D006942 ORTHO05D008737 2.7e-55 219.9 196 54.1
BcaC04g22009 Brassica carinata HOM05D006942 ORTHO05D008737 2.7e-55 219.9 184 56.0
A09p19530 Brassica napus HOM05D006942 ORTHO05D008737 2.7e-55 219.9 184 56.0
C09p24900 Brassica napus HOM05D006942 ORTHO05D008737 2.7e-55 219.9 184 56.0
BolC9t55381H Brassica oleracea HOM05D006942 ORTHO05D008737 2.7e-55 219.9 184 56.0
MBI11_g05460_MAGBIO Magnolia biondii HOM05D006942 ORTHO05D008737 2.7e-55 219.9 215 51.6
Aqoxy2G00557 Aquilegia oxysepala HOM05D006942 ORTHO05D008737 3.6e-55 219.5 240 49.2
HanXRQChr13g0398101 Helianthus annuus HOM05D006942 ORTHO05D008737 3.6e-55 219.5 187 56.7
Thecc.05G293100 Theobroma cacao HOM05D006942 ORTHO05D008737 3.6e-55 219.5 196 53.6
Eucgr.K01480 Eucalyptus grandis HOM05D006942 ORTHO05D008737 4.7e-55 219.2 188 53.7
Gohir.A13G105500 Gossypium hirsutum HOM05D006942 ORTHO05D008737 8.0e-55 218.4 260 44.6
Manes.08G149200 Manihot esculenta HOM05D006942 ORTHO05D008737 1.0e-54 218.0 191 53.9
PSO339G1210 Papaver somniferum HOM05D006942 ORTHO05D008737 1.0e-54 218.0 245 50.2
Potri.013G059500 Populus trichocarpa HOM05D006942 ORTHO05D008737 1.0e-54 218.0 200 52.5
Carub.0002s0962 Capsella rubella HOM05D006942 ORTHO05D008737 1.4e-54 217.6 205 53.2
vmacro09146 Vaccinium macrocarpon HOM05D006942 ORTHO05D008737 1.8e-54 217.2 195 54.9
CANSAT78G1082 Cannabis sativa HOM05D006942 ORTHO05D008737 2.3e-54 216.9 192 56.2
Sed0013150 Sechium edule HOM05D006942 ORTHO05D008737 3.9e-54 216.1 192 54.2
Eucgr.A02087 Eucalyptus grandis HOM05D006942 ORTHO05D008737 5.2e-54 215.7 183 56.8
TWI34G0045 Tripterygium wilfordii HOM05D006942 ORTHO05D008737 5.2e-54 215.7 210 51.0
MSTRG.19939 Avicennia marina HOM05D006942 ORTHO05D008737 6.7e-54 215.3 194 53.1
CARHR028870 Cardamine hirsuta HOM05D006942 ORTHO05D008737 6.7e-54 215.3 188 54.8
QL07p020181 Quercus lobata HOM05D006942 ORTHO05D008737 6.7e-54 215.3 188 54.3
SGA_v2.0_scaffold50G18512 Striga asiatica HOM05D006942 ORTHO05D008737 8.8e-54 214.9 194 53.1
ClCG10G013230 Citrullus lanatus HOM05D006942 ORTHO05D008737 1.1e-53 214.5 199 52.3
CsaV3_3G043400 Cucumis sativus L. HOM05D006942 ORTHO05D008737 1.5e-53 214.2 186 54.8
Atru.chr2.1323 Acer truncatum HOM05D006942 ORTHO05D008737 2.6e-53 213.4 244 46.7
Glyma.16G042200 Glycine max HOM05D006942 ORTHO05D008737 3.3e-53 213.0 206 51.0
THA.LOC104823787 Tarenaya hassleriana HOM05D006942 ORTHO05D008737 3.3e-53 213.0 271 45.0
MELO3C026901.2 Cucumis melo HOM05D006942 ORTHO05D008737 5.7e-53 212.2 229 47.6
arahy.Tifrunner.gnm1.ann1.0W916P Arachis hypogaea HOM05D006942 ORTHO05D008737 7.4e-53 211.8 246 47.2
Cc00_g08890 Coffea canephora HOM05D006942 ORTHO05D008737 7.4e-53 211.8 191 53.9
ECA233G4155 Erigeron canadensis HOM05D006942 ORTHO05D008737 7.4e-53 211.8 196 54.6
Psat3g089160 Pisum sativum HOM05D006942 ORTHO05D008737 9.7e-53 211.5 191 53.9
HPP92_018642 Vanilla planifolia HOM05D006942 ORTHO05D008737 9.7e-53 211.5 206 49.0
Lj1g0019871 Lotus japonicus HOM05D006942 ORTHO05D008737 1.3e-52 211.1 182 56.0
Medtr7g085420 Medicago truncatula HOM05D006942 ORTHO05D008737 1.7e-52 210.7 185 56.8
DCAR_009675 Daucus carota HOM05D006942 ORTHO05D008737 2.2e-52 210.3 180 53.9
Phvul.001G109600 Phaseolus vulgaris HOM05D006942 ORTHO05D008737 2.2e-52 210.3 185 54.1
Migut.J01895 Erythranthe guttata HOM05D006942 ORTHO05D008737 3.7e-52 209.5 182 54.9
Peaxi162Scf00076g01036 Petunia axillaris HOM05D006942 ORTHO05D008737 6.3e-52 208.8 208 51.4
VMungo1383G0897 Vigna mungo HOM05D006942 ORTHO05D008737 8.2e-52 208.4 185 53.5
CDE10G0368 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 1.1e-51 208.0 241 47.3
TPR.G5873 Trifolium pratense HOM05D006942 ORTHO05D008737 1.4e-51 207.6 184 54.9
DCAR_019882 Daucus carota HOM05D006942 ORTHO05D008737 2.4e-51 206.8 180 53.3
Glyma.19G110300 Glycine max HOM05D006942 ORTHO05D008737 2.4e-51 206.8 185 53.5
Sed0025081 Sechium edule HOM05D006942 ORTHO05D008737 2.4e-51 206.8 255 45.5
Aa31LG2G1990 Aethionema arabicum HOM05D006942 ORTHO05D008737 4.1e-51 206.1 209 49.8
Cpa.g.sc51.94 Carica papaya HOM05D006942 ORTHO05D008737 2.6e-50 203.4 195 50.8
CDE06G2457 Ceratophyllum demersum HOM05D006942 ORTHO05D008737 4.5e-50 202.6 224 47.8
Lsat_1_v5_gn_6_36781 Lactuca sativa HOM05D006942 ORTHO05D008737 4.5e-50 202.6 202 51.5
Os07g0170200 Oryza sativa ssp. japonica HOM05D006942 ORTHO05D008737 6.5e-49 198.7 168 56.0
Sabra19G0041400 Salix brachista HOM05D006942 ORTHO05D008737 7.2e-48 195.3 237 45.6
Haze_19409 Corylus avellana HOM05D006942 ORTHO05D008737 1.0e-46 191.4 267 41.6
TAR623G0107 Trochodendron aralioides HOM05D002140 ORTHO05D002382 3.0e-46 189.9 166 52.4
PGR142G1268 Punica granatum HOM05D006942 ORTHO05D008737 1.2e-45 188.0 242 44.2
AUR62032674 Chenopodium quinoa HOM05D006942 ORTHO05D008737 2.0e-45 187.2 182 52.2
EL10Ac3g06808 Beta vulgaris HOM05D006942 ORTHO05D008737 3.3e-45 186.4 287 40.1
Sc13g0007650 Simmondsia chinensis HOM05D006942 ORTHO05D008737 2.2e-44 183.7 170 54.1
Lalb_Chr06g0173931 Lupinus albus HOM05D006942 ORTHO05D008737 4.1e-43 179.5 291 37.8
Gohir.D11G268200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 9.1e-43 178.3 241 44.8
CBR_g603 Chara braunii HOM05D006942 ORTHO05D008737 1.1e-40 171.4 219 46.1
Prupe.7G002400 Prunus persica HOM05D006942 ORTHO05D008737 1.5e-40 171.0 161 50.9
CSS0046453 Camellia sinensis var. sinensis HOM05D006942 ORTHO05D008737 3.2e-40 169.9 240 42.1
Lj2A357G77 Lonicera japonica HOM05D006942 ORTHO05D008737 1.2e-39 167.9 151 52.3
CiPaw.09G001300 Carya illinoinensis HOM05D006942 ORTHO05D008737 3.6e-39 166.4 156 51.9
Actinidia38618 Actinidia chinensis HOM05D006942 ORTHO05D008737 1.4e-38 164.5 174 48.9
Sabra13G0052800 Salix brachista HOM05D006942 ORTHO05D008737 1.8e-38 164.1 149 53.7
Ca_08258_v3 Cicer arietinum L. HOM05D006942 ORTHO05D008737 1.1e-35 154.8 151 53.0
Manes.09G142700 Manihot esculenta HOM05D006942 ORTHO05D008737 1.4e-35 154.5 205 42.4
Nitab4.5_0000911g0030 Nicotiana tabacum HOM05D006942 ORTHO05D008737 9.1e-35 151.8 191 46.6
PRCOL_00006758 Prasinoderma coloniale HOM05D006942 ORTHO05D008737 2.7e-34 150.2 177 42.9
AUR62032073 Chenopodium quinoa HOM05D006942 ORTHO05D008737 1.3e-33 147.9 199 42.7
Duzib128G0620 Durio zibethinus HOM05D006942 ORTHO05D008737 6.1e-31 139.0 157 44.6
unitig_85.g27430 Utricularia gibba HOM05D006942 ORTHO05D008737 6.1e-31 139.0 139 52.5
arahy.Tifrunner.gnm1.ann1.T4HPZA Arachis hypogaea HOM05D006942 ORTHO05D008737 5.2e-30 136.0 259 35.5
Cre04.g217903 Chlamydomonas reinhardtii HOM05D006942 ORTHO05D008737 1.1e-27 128.3 176 42.6
Ah.04g153240 Amaranthus hybridus HOM05D000653 ORTHO05D003117 3.6e-23 113.2 176 36.4
Oeu048436.1 Olea europaea HOM05D006942 ORTHO05D008737 2.0e-21 107.5 185 36.2
Actinidia17307 Actinidia chinensis HOM05D006942 ORTHO05D008737 5.8e-21 105.9 93 51.6
Hund24842 Selenicereus undatus HOM05D006942 ORTHO05D008737 5.8e-21 105.9 245 30.2
Potri.019G033200 Populus trichocarpa HOM05D006942 ORTHO05D008737 4.9e-20 102.8 147 38.1
Gohir.A11G258200 Gossypium hirsutum HOM05D006942 ORTHO05D008737 3.2e-19 100.1 84 51.2
SalBow2G1960 Salvia bowleyana HOM05D006942 ORTHO05D008737 2.7e-18 97.1 93 48.4
SEGI_36650 Sequoiadendron giganteum HOM05D006942 ORTHO05D008737 5.0e-17 92.8 123 43.1
Zm00001eb300960 Zea mays HOM05D006942 ORTHO05D008737 2.3e-06 57.4 48 56.2


User provided reference genes

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