Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_13710 Physcomitrium patens HOM05D003714 ORTHO05D004379 1.5e-138 496.1 249 100.0
Pp3c3_14800 Physcomitrium patens HOM05D003714 ORTHO05D004379 3.3e-32 142.9 393 31.6
Pp3c4_16750 Physcomitrium patens HOM05D003714 ORTHO05D004379 9.7e-32 141.4 182 45.6
Mapoly0151s0026 Marchantia polymorpha HOM05D003714 ORTHO05D004379 1.1e-24 117.9 404 27.7
SMO118G0436 Selaginella moellendorffii HOM05D003714 ORTHO05D004379 2.8e-23 113.2 181 38.7
THA.LOC104810862 Tarenaya hassleriana HOM05D003714 ORTHO05D004379 3.7e-23 112.8 181 39.2
CANSAT54G2133 Cannabis sativa HOM05D003714 ORTHO05D004379 2.4e-22 110.2 181 38.7
Pp3c3_5960 Physcomitrium patens HOM05D003714 ORTHO05D004379 3.1e-22 109.8 392 27.6
CARHR274380 Cardamine hirsuta HOM05D003714 ORTHO05D004379 4.1e-22 109.4 182 37.9
Cc01_g10960 Coffea canephora HOM05D003714 ORTHO05D004379 4.1e-22 109.4 181 39.8
AL8G37290 Arabidopsis lyrata HOM05D003714 ORTHO05D004379 5.3e-22 109.0 182 37.9
Dinv32729 Davidia involucrata HOM05D003714 ORTHO05D004379 5.3e-22 109.0 181 38.7
Gohir.D05G104100 Gossypium hirsutum HOM05D003714 ORTHO05D004379 5.3e-22 109.0 182 37.9
AT5G60700 Arabidopsis thaliana HOM05D003714 ORTHO05D004379 7.0e-22 108.6 182 37.9
Gorai.009G108300 Gossypium raimondii HOM05D003714 ORTHO05D004379 7.0e-22 108.6 182 37.4
MSTRG.18670 Avicennia marina HOM05D003714 ORTHO05D004379 9.1e-22 108.2 181 38.1
Lj3g0001899 Lotus japonicus HOM05D003714 ORTHO05D004379 9.1e-22 108.2 182 38.5
Atru.chr3.3608 Acer truncatum HOM05D003714 ORTHO05D004379 1.2e-21 107.8 370 28.9
Gohir.A05G104300 Gossypium hirsutum HOM05D003714 ORTHO05D004379 1.2e-21 107.8 182 37.4
SMO165G0075 Selaginella moellendorffii HOM05D003714 ORTHO05D004379 1.2e-21 107.8 182 39.0
Carub.0008s2138 Capsella rubella HOM05D003714 ORTHO05D004379 1.5e-21 107.5 182 37.9
COL.COLO4_18316 Corchorus olitorius HOM05D003714 ORTHO05D004379 1.5e-21 107.5 182 37.4
DCAR_018798 Daucus carota HOM05D003714 ORTHO05D004379 1.5e-21 107.5 181 37.6
Glyma.12G076600 Glycine max HOM05D003714 ORTHO05D004379 2.0e-21 107.1 181 37.6
unitig_27.g25054 Utricularia gibba HOM05D003714 ORTHO05D004379 2.0e-21 107.1 181 37.0
CSS0046644 Camellia sinensis var. sinensis HOM05D003714 ORTHO05D004379 3.4e-21 106.3 181 37.6
AUR62042199 Chenopodium quinoa HOM05D003714 ORTHO05D004379 3.4e-21 106.3 181 36.5
Ciclev10030090m.g Citrus clementina HOM05D003714 ORTHO05D004379 3.4e-21 106.3 181 37.6
Migut.N02587 Erythranthe guttata HOM05D003714 ORTHO05D004379 3.4e-21 106.3 397 27.2
Gohir.A03G032400 Gossypium hirsutum HOM05D003714 ORTHO05D004379 3.4e-21 106.3 182 37.4
Gohir.D03G136000 Gossypium hirsutum HOM05D003714 ORTHO05D004379 3.4e-21 106.3 182 37.4
Gorai.003G143100 Gossypium raimondii HOM05D003714 ORTHO05D004379 3.4e-21 106.3 182 37.4
Oeu001285.1 Olea europaea HOM05D003714 ORTHO05D004379 3.4e-21 106.3 181 37.6
Nitab4.5_0001939g0040 Nicotiana tabacum HOM05D003714 ORTHO05D004379 4.5e-21 105.9 181 37.6
PSO063G6987 Papaver somniferum HOM05D003714 ORTHO05D004379 5.9e-21 105.5 181 36.5
PSO339G1676 Papaver somniferum HOM05D003714 ORTHO05D004379 5.9e-21 105.5 181 36.5
Zm00001eb258310 Zea mays HOM05D003714 ORTHO05D004379 5.9e-21 105.5 181 38.7
EL10Ac9g22541 Beta vulgaris HOM05D003714 ORTHO05D004379 7.7e-21 105.1 398 27.9
Glyma.11G145200 Glycine max HOM05D003714 ORTHO05D004379 7.7e-21 105.1 181 37.0
Lalb_Chr01g0004371 Lupinus albus HOM05D003714 ORTHO05D004379 7.7e-21 105.1 181 37.6
Prupe.6G103800 Prunus persica HOM05D003714 ORTHO05D004379 7.7e-21 105.1 181 37.0
RcHm_v2.0_Chr5g0058661 Rosa chinensis HOM05D003714 ORTHO05D004379 7.7e-21 105.1 181 37.0
SalBow3G2648 Salvia bowleyana HOM05D003714 ORTHO05D004379 7.7e-21 105.1 181 36.5
TPR.G6161 Trifolium pratense HOM05D003714 ORTHO05D004379 7.7e-21 105.1 181 37.0
TWI75G0420 Tripterygium wilfordii HOM05D003714 ORTHO05D004379 7.7e-21 105.1 181 37.6
AagrBONN_evm.TU.Sc2ySwM_117.2800 Anthoceros agrestis HOM05D003714 ORTHO05D004379 1.0e-20 104.8 403 26.6
CSS0039471 Camellia sinensis var. sinensis HOM05D003714 ORTHO05D004379 1.0e-20 104.8 181 37.0
Lj3g0004216 Lotus japonicus HOM05D003714 ORTHO05D004379 1.0e-20 104.8 181 37.6
Psat7g144800 Pisum sativum HOM05D003714 ORTHO05D004379 1.0e-20 104.8 181 37.0
VMungo1127G1929 Vigna mungo HOM05D003714 ORTHO05D004379 1.0e-20 104.8 406 27.1
ClCG01G013560 Citrullus lanatus HOM05D003714 ORTHO05D004379 1.3e-20 104.4 181 37.6
Hma1.2p1_0307F.1_g119810 Hydrangea macrophylla HOM05D003714 ORTHO05D004379 1.3e-20 104.4 181 37.0
Phvul.011G080500 Phaseolus vulgaris HOM05D003714 ORTHO05D004379 1.3e-20 104.4 181 36.5
Sabra09G0006800 Salix brachista HOM05D003714 ORTHO05D004379 1.3e-20 104.4 181 37.0
Sed0011730 Sechium edule HOM05D003714 ORTHO05D004379 1.3e-20 104.4 181 37.6
SEGI_02314 Sequoiadendron giganteum HOM05D003714 ORTHO05D004379 1.3e-20 104.4 397 25.7
SEGI_21871 Sequoiadendron giganteum HOM05D003714 ORTHO05D004379 1.3e-20 104.4 397 25.7
CDE07G1448 Ceratophyllum demersum HOM05D003714 ORTHO05D004379 1.7e-20 104.0 182 35.7
Ca_20855_v3 Cicer arietinum L. HOM05D003714 ORTHO05D004379 1.7e-20 104.0 181 37.0
Gohir.A08G199100 Gossypium hirsutum HOM05D003714 ORTHO05D004379 1.7e-20 104.0 182 36.8
Gorai.004G230400 Gossypium raimondii HOM05D003714 ORTHO05D004379 1.7e-20 104.0 182 36.8
Lalb_Chr03g0027461 Lupinus albus HOM05D003714 ORTHO05D004379 1.7e-20 104.0 181 37.0
Medtr4g058760 Medicago truncatula HOM05D003714 ORTHO05D004379 1.7e-20 104.0 181 37.0
Potri.009G010900 Populus trichocarpa HOM05D003714 ORTHO05D004379 1.7e-20 104.0 181 37.0
Duzib168G1405 Durio zibethinus HOM05D003714 ORTHO05D004379 2.2e-20 103.6 182 36.8
Eucgr.B02513 Eucalyptus grandis HOM05D003714 ORTHO05D004379 2.2e-20 103.6 181 38.1
Rhsim13G0095500 Rhododendron simsii HOM05D003714 ORTHO05D004379 2.2e-20 103.6 181 37.6
Sc15g0001490 Simmondsia chinensis HOM05D003714 ORTHO05D004379 2.2e-20 103.6 181 37.0
vmacro03207 Vaccinium macrocarpon HOM05D003714 ORTHO05D004379 2.2e-20 103.6 181 37.0
GSVIVG01025204001 Vitis vinifera HOM05D003714 ORTHO05D004379 2.2e-20 103.6 181 36.5
Actinidia03720 Actinidia chinensis HOM05D003714 ORTHO05D004379 2.9e-20 103.2 181 36.5
CsaV3_1G013950 Cucumis sativus L. HOM05D003714 ORTHO05D004379 2.9e-20 103.2 181 37.0
Manes.04G019400 Manihot esculenta HOM05D003714 ORTHO05D004379 2.9e-20 103.2 181 37.0
Manes.11G147100 Manihot esculenta HOM05D003714 ORTHO05D004379 2.9e-20 103.2 181 35.9
Nn2g10822 Nelumbo nucifera HOM05D003714 ORTHO05D004379 2.9e-20 103.2 181 36.5
PGR102G2693 Punica granatum HOM05D003714 ORTHO05D004379 2.9e-20 103.2 181 37.0
vmacro14427 Vaccinium macrocarpon HOM05D003714 ORTHO05D004379 2.9e-20 103.2 181 36.5
PSO339G1383 Papaver somniferum HOM05D003714 ORTHO05D004379 3.8e-20 102.8 181 35.9
QL01p021761 Quercus lobata HOM05D003714 ORTHO05D004379 3.8e-20 102.8 181 36.5
Sabra04G0143400 Salix brachista HOM05D003714 ORTHO05D004379 3.8e-20 102.8 181 36.5
Thecc.09G342900 Theobroma cacao HOM05D003714 ORTHO05D004379 3.8e-20 102.8 182 36.8
TWI79G0067 Tripterygium wilfordii HOM05D003714 ORTHO05D004379 6.5e-20 102.1 181 36.5
CAN.G631.39 Capsicum annuum HOM05D003714 ORTHO05D004379 8.5e-20 101.7 181 37.0
MBI10_g19605_MAGBIO Magnolia biondii HOM05D003714 ORTHO05D004379 8.5e-20 101.7 181 35.4
MD03G1120400 Malus domestica HOM05D003714 ORTHO05D004379 8.5e-20 101.7 181 35.9
PSO384G2520 Papaver somniferum HOM05D003714 ORTHO05D004379 8.5e-20 101.7 181 35.9
Solyc11g069560.2 Solanum lycopersicum HOM05D003714 ORTHO05D004379 8.5e-20 101.7 181 37.0
Sopen11g028270 Solanum pennellii HOM05D003714 ORTHO05D004379 8.5e-20 101.7 181 37.0
PGSC0003DMG400008087 Solanum tuberosum HOM05D003714 ORTHO05D004379 8.5e-20 101.7 181 37.0
TAR633G1536 Trochodendron aralioides HOM05D003714 ORTHO05D004379 8.5e-20 101.7 181 36.5
CiPaw.13G115700 Carya illinoinensis HOM05D003714 ORTHO05D004379 1.1e-19 101.3 181 36.5
ECA238G0686 Erigeron canadensis HOM05D003714 ORTHO05D004379 1.1e-19 101.3 181 36.5
Migut.D02239 Erythranthe guttata HOM05D003714 ORTHO05D004379 1.1e-19 101.3 181 35.9
Migut.O00751 Erythranthe guttata HOM05D003714 ORTHO05D004379 1.1e-19 101.3 181 35.9
Lj2C1024T6 Lonicera japonica HOM05D003714 ORTHO05D004379 1.1e-19 101.3 181 36.5
Duzib150G0819 Durio zibethinus HOM05D003714 ORTHO05D004379 1.4e-19 100.9 182 36.8
Haze_23797 Corylus avellana HOM05D003714 ORTHO05D004379 1.9e-19 100.5 181 36.5
Haze_23798 Corylus avellana HOM05D003714 ORTHO05D004379 1.9e-19 100.5 181 36.5
DCAR_022764 Daucus carota HOM05D003714 ORTHO05D004379 1.9e-19 100.5 182 34.6
Gohir.D08G216500 Gossypium hirsutum HOM05D003714 ORTHO05D004379 1.9e-19 100.5 182 36.3
HanXRQChr14g0452661 Helianthus annuus HOM05D003714 ORTHO05D004379 1.9e-19 100.5 418 26.1
MELO3C004898.2 Cucumis melo HOM05D003714 ORTHO05D004379 2.5e-19 100.1 419 26.5
Os02g0806500 Oryza sativa ssp. japonica HOM05D003714 ORTHO05D004379 2.5e-19 100.1 181 37.0
Lsat_1_v5_gn_2_100500 Lactuca sativa HOM05D003714 ORTHO05D004379 4.2e-19 99.4 181 34.8
Actinidia07147 Actinidia chinensis HOM05D003714 ORTHO05D004379 5.5e-19 99.0 181 35.9
Aqoxy1G01219 Aquilegia oxysepala HOM05D003714 ORTHO05D004379 5.5e-19 99.0 181 34.8
MD11G1138800 Malus domestica HOM05D003714 ORTHO05D004379 5.5e-19 99.0 181 35.4
MBI07_g42224_MAGBIO Magnolia biondii HOM05D003714 ORTHO05D004379 9.4e-19 98.2 181 35.9
arahy.Tifrunner.gnm1.ann1.8QPZ90 Arachis hypogaea HOM05D003714 ORTHO05D004379 1.2e-18 97.8 157 39.5
ATR0048G003 Amborella trichopoda HOM05D003714 ORTHO05D004379 2.7e-18 96.7 394 25.9
Ah.01g003010 Amaranthus hybridus HOM05D003714 ORTHO05D004379 1.0e-17 94.7 181 35.4
arahy.Tifrunner.gnm1.ann1.BKDH6Z Arachis hypogaea HOM05D003714 ORTHO05D004379 1.4e-17 94.4 171 35.7
BolC2t07227H Brassica oleracea HOM05D003714 ORTHO05D004379 3.9e-17 92.8 94 54.3
Nitab4.5_0010325g0010 Nicotiana tabacum HOM05D003714 ORTHO05D004379 5.2e-17 92.4 97 52.6
BcaB05g22662 Brassica carinata HOM05D003714 ORTHO05D004379 8.8e-17 91.7 94 53.2
BcaC03g13945 Brassica carinata HOM05D003714 ORTHO05D004379 8.8e-17 91.7 94 53.2
C02p11520 Brassica napus HOM05D003714 ORTHO05D004379 8.8e-17 91.7 94 53.2
BraA02t05710Z Brassica rapa HOM05D003714 ORTHO05D004379 8.8e-17 91.7 94 53.2
AUR62022789 Chenopodium quinoa HOM05D003714 ORTHO05D004379 8.8e-17 91.7 113 46.0
Peaxi162Scf00270g00113 Petunia axillaris HOM05D003714 ORTHO05D004379 1.5e-16 90.9 94 53.2
BNapus_Darmor_BZH_scaffold_38p00110 Brassica napus HOM05D003714 ORTHO05D004379 2.0e-16 90.5 94 53.2
Solyc06g075100.3 Solanum lycopersicum HOM05D003714 ORTHO05D004379 2.0e-16 90.5 94 53.2
Actinidia13049 Actinidia chinensis HOM05D003714 ORTHO05D004379 2.6e-16 90.1 267 30.3
Aa31LG1G12660 Aethionema arabicum HOM05D003714 ORTHO05D004379 2.6e-16 90.1 94 52.1
AagrBONN_evm.TU.Sc2ySwM_368.1662 Anthoceros agrestis HOM05D003714 ORTHO05D004379 2.6e-16 90.1 127 39.4
BcaB08g36372 Brassica carinata HOM05D003714 ORTHO05D004379 2.6e-16 90.1 94 52.1
BcaC04g19732 Brassica carinata HOM05D003714 ORTHO05D004379 2.6e-16 90.1 94 52.1
A10p17940 Brassica napus HOM05D003714 ORTHO05D004379 2.6e-16 90.1 94 52.1
C09p53430 Brassica napus HOM05D003714 ORTHO05D004379 2.6e-16 90.1 94 52.1
BolC9t58217H Brassica oleracea HOM05D003714 ORTHO05D004379 2.6e-16 90.1 94 52.1
BraA10t43869Z Brassica rapa HOM05D003714 ORTHO05D004379 2.6e-16 90.1 94 52.1
Thhalv10012601m.g Eutrema salsugineum HOM05D003714 ORTHO05D004379 2.6e-16 90.1 94 52.1
Sp6g22270 Schrenkiella parvula HOM05D003714 ORTHO05D004379 2.6e-16 90.1 94 52.1
FvH4_3g31890 Fragaria vesca HOM05D003714 ORTHO05D004379 3.3e-16 89.7 94 51.1
FAN11G3344 Fragaria x ananassa HOM05D003714 ORTHO05D004379 3.3e-16 89.7 94 51.1
FAN16G2552 Fragaria x ananassa HOM05D003714 ORTHO05D004379 3.3e-16 89.7 94 51.1
FAN25G0709 Fragaria x ananassa HOM05D003714 ORTHO05D004379 3.3e-16 89.7 94 51.1
Nn2g13122 Nelumbo nucifera HOM05D003714 ORTHO05D004379 3.3e-16 89.7 312 29.8
Sopen06g031520 Solanum pennellii HOM05D003714 ORTHO05D004379 3.3e-16 89.7 94 52.1
Rhsim01G0215800 Rhododendron simsii HOM05D003714 ORTHO05D004379 4.4e-16 89.4 94 52.1
Hund08163 Selenicereus undatus HOM05D003714 ORTHO05D004379 4.4e-16 89.4 94 51.1
FAN21G0199 Fragaria x ananassa HOM05D003714 ORTHO05D004379 5.7e-16 89.0 94 50.0
Lj1A202T36 Lonicera japonica HOM05D003714 ORTHO05D004379 5.7e-16 89.0 94 51.1
Peaxi162Scf00029g01511 Petunia axillaris HOM05D003714 ORTHO05D004379 5.7e-16 89.0 97 50.5
SGA_v2.0_scaffold116G32255 Striga asiatica HOM05D003714 ORTHO05D004379 5.7e-16 89.0 94 51.1
SGA_v2.0_scaffold180G39648 Striga asiatica HOM05D003714 ORTHO05D004379 1.3e-15 87.8 181 33.7
HPP92_025358 Vanilla planifolia HOM05D003714 ORTHO05D004379 1.3e-15 87.8 97 49.5
Potri.004G212000 Populus trichocarpa HOM05D003714 ORTHO05D004379 1.7e-15 87.4 113 44.2
unitig_8.g3298 Utricularia gibba HOM05D003714 ORTHO05D004379 1.7e-15 87.4 94 48.9
CAN.G1966.3 Capsicum annuum HOM05D003714 ORTHO05D004379 2.2e-15 87.0 97 50.5
SEGI_03824 Sequoiadendron giganteum HOM05D003714 ORTHO05D004379 3.7e-15 86.3 94 47.9
SEGI_28974 Sequoiadendron giganteum HOM05D003714 ORTHO05D004379 4.8e-15 85.9 94 47.9
CDE04G3105 Ceratophyllum demersum HOM05D003714 ORTHO05D004379 6.3e-15 85.5 97 47.4
Actinidia24111 Actinidia chinensis HOM05D003714 ORTHO05D004379 7.0e-14 82.0 442 23.8
Nitab4.5_0000602g0070 Nicotiana tabacum HOM05D003714 ORTHO05D004379 7.5e-08 62.0 94 41.5
Cpa.g.sc279.5 Carica papaya HOM05D003714 ORTHO05D004379 2.8e-07 60.1 42 66.7


User provided reference genes

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