Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.0e-257 892.9 460 100.0
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.2e-253 879.4 453 100.0
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.4e-108 396.7 380 47.9
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 3.1e-108 396.4 379 48.3
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.5e-107 394.0 381 49.1
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 2.6e-107 393.3 380 48.2
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 1.7e-106 390.6 390 47.7
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 1.7e-106 390.6 390 47.7
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 1.7e-106 390.6 390 47.7
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.7e-106 390.6 382 49.0
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 2.2e-106 390.2 380 47.9
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 2.9e-106 389.8 387 46.0
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 2.9e-106 389.8 377 48.0
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 3.8e-106 389.4 365 50.7
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 3.8e-106 389.4 365 50.7
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 3.8e-106 389.4 385 46.0
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 4.9e-106 389.0 384 48.4
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 6.4e-106 388.7 400 45.2
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 6.4e-106 388.7 381 46.5
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 8.4e-106 388.3 391 47.6
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 8.4e-106 388.3 381 48.6
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 1.1e-105 387.9 365 50.7
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 1.1e-105 387.9 411 45.3
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.4e-105 387.5 378 47.4
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 1.9e-105 387.1 390 47.7
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.9e-105 387.1 390 47.2
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 2.4e-105 386.7 384 46.6
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 4.2e-105 386.0 380 45.5
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 5.4e-105 385.6 366 50.0
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 9.3e-105 384.8 365 50.1
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 1.6e-104 384.0 390 44.6
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 3.5e-104 382.9 381 48.6
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 6.0e-104 382.1 378 47.4
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 6.0e-104 382.1 392 46.4
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 7.9e-104 381.7 383 47.0
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 7.9e-104 381.7 387 47.0
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 7.9e-104 381.7 398 45.0
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 7.9e-104 381.7 380 48.7
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 1.3e-103 380.9 365 49.9
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 2.3e-103 380.2 415 44.3
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 3.0e-103 379.8 382 47.1
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 3.0e-103 379.8 380 48.2
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 3.9e-103 379.4 413 43.3
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 3.9e-103 379.4 390 46.9
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 5.1e-103 379.0 365 48.2
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 6.7e-103 378.6 369 48.8
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 8.7e-103 378.3 378 47.4
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 8.7e-103 378.3 378 47.6
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 1.1e-102 377.9 365 48.2
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.1e-102 377.9 374 47.1
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.1e-102 377.9 385 45.7
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 1.9e-102 377.1 403 44.7
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 3.3e-102 376.3 378 47.4
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 3.3e-102 376.3 370 48.6
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 3.3e-102 376.3 380 47.6
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 4.3e-102 375.9 365 49.0
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 7.4e-102 375.2 378 47.6
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 9.6e-102 374.8 389 45.0
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 2.1e-101 373.6 376 46.0
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 2.8e-101 373.2 365 47.9
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 3.7e-101 372.9 399 45.6
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.8e-101 372.5 389 44.7
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.8e-101 372.5 389 44.7
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 6.2e-101 372.1 379 46.7
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 1.4e-100 370.9 389 46.3
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 3.1e-100 369.8 411 42.6
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 5.3e-100 369.0 390 45.1
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.3e-100 369.0 411 42.6
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 6.9e-100 368.6 376 45.2
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 2.0e-99 367.1 389 45.5
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 3.4e-99 366.3 413 45.8
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.4e-99 366.3 329 49.5
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.5e-99 365.9 382 45.0
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 9.9e-99 364.8 333 51.7
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 9.9e-99 364.8 425 43.8
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 1.3e-98 364.4 374 45.5
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.7e-98 364.0 375 46.1
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.2e-98 363.6 405 43.5
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 2.9e-98 363.2 380 44.2
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 3.8e-98 362.8 430 42.8
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 6.4e-98 362.1 412 43.2
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 6.4e-98 362.1 377 44.6
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 8.4e-98 361.7 372 44.9
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 1.9e-97 360.5 380 46.1
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 2.4e-97 360.1 375 46.4
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 2.4e-97 360.1 404 43.6
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 5.5e-97 359.0 402 42.5
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 5.5e-97 359.0 433 40.4
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 7.1e-97 358.6 391 42.7
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 1.2e-96 357.8 390 44.6
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.2e-96 357.8 383 43.9
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 2.1e-96 357.1 380 43.9
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 4.6e-96 355.9 399 43.1
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 7.9e-96 355.1 369 45.8
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.9e-95 352.8 393 44.3
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 3.9e-95 352.8 362 47.5
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 8.7e-95 351.7 378 46.6
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 8.7e-95 351.7 377 43.5
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 2.5e-94 350.1 360 47.5
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 1.3e-93 347.8 413 41.4
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 5.3e-92 342.4 390 41.5
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 9.0e-92 341.7 333 45.3
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 2.6e-91 340.1 318 50.3
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 5.8e-91 339.0 383 42.8
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 7.6e-91 338.6 382 42.1
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 7.6e-91 338.6 375 41.9
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 4.2e-89 332.8 378 42.3
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 1.2e-88 331.3 371 43.4
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 1.1e-86 324.7 379 40.1
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 3.8e-82 309.7 389 39.1
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 2.7e-80 303.5 380 39.7
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.5e-78 297.7 350 41.7
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 5.7e-78 295.8 290 45.5
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 1.8e-76 290.8 367 41.4
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 1.2e-75 288.1 269 47.6
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 1.5e-75 287.7 297 45.5
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.3e-74 284.6 389 37.5
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 2.9e-74 283.5 327 42.2
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 6.5e-74 282.3 327 42.2
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 6.5e-74 282.3 294 45.2
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.9e-73 280.8 346 41.0
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 3.2e-73 280.0 412 37.6
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 4.6e-72 276.2 374 39.3
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 7.9e-72 275.4 382 38.5
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 4.8e-69 266.2 238 50.4
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 9.1e-60 235.3 335 39.4
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 2.9e-58 230.3 312 40.4
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.0e-55 221.9 259 40.5
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.9e-49 201.1 210 44.8
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.3e-45 188.3 243 39.9
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 8.3e-45 185.7 201 47.3
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.2e-43 181.8 154 49.4
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 4.0e-39 166.8 373 31.4
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 1.7e-34 151.4 129 52.7
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 6.1e-32 142.9 196 37.2
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 7.3e-25 119.4 134 45.5
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 4.4e-22 110.2 292 26.7
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.4e-22 110.2 90 52.2
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 7.5e-22 109.4 212 31.1
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 1.1e-20 105.5 436 26.1
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 3.9e-18 97.1 132 37.9
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 7.3e-17 92.8 112 42.0
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 5.8e-14 83.2 119 38.7


User provided reference genes

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