Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 3.9e-293 1010.7 518 100.0
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 2.3e-253 878.6 453 100.0
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 3.1e-133 479.6 444 49.8
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 5.3e-133 478.8 447 49.9
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.2e-132 477.6 445 49.4
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 1.2e-132 477.6 453 47.7
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.5e-132 477.2 455 47.9
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 2.0e-132 476.9 449 48.6
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 4.5e-132 475.7 447 49.7
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 1.0e-131 474.6 456 49.1
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 2.2e-131 473.4 476 47.5
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 3.8e-131 472.6 452 47.1
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 6.5e-131 471.9 447 50.6
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.1e-130 471.1 465 46.9
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 1.4e-130 470.7 446 50.2
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.9e-130 470.3 449 49.7
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 2.5e-130 469.9 438 50.5
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 5.5e-130 468.8 457 48.6
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 7.2e-130 468.4 444 48.6
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 9.4e-130 468.0 456 48.5
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 9.4e-130 468.0 456 48.5
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 9.4e-130 468.0 456 48.5
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 1.6e-129 467.2 454 48.5
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 2.7e-129 466.5 442 49.3
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 3.6e-129 466.1 457 48.6
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 3.6e-129 466.1 452 47.6
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 4.7e-129 465.7 456 48.7
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 4.7e-129 465.7 456 48.2
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 6.1e-129 465.3 480 46.9
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.0e-128 464.5 452 47.8
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 1.8e-128 463.8 431 50.8
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 1.8e-128 463.8 431 50.8
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 2.3e-128 463.4 455 45.7
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 2.3e-128 463.4 450 48.9
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 3.9e-128 462.6 463 46.7
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 5.2e-128 462.2 431 51.0
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 5.2e-128 462.2 444 48.6
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 8.8e-128 461.5 448 48.7
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.5e-127 460.7 481 45.1
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.0e-127 460.3 442 48.4
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 3.3e-127 459.5 431 50.6
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 3.3e-127 459.5 452 48.7
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 4.4e-127 459.1 475 45.7
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 7.4e-127 458.4 466 48.3
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 1.7e-126 457.2 447 49.2
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 1.7e-126 457.2 431 49.2
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 2.2e-126 456.8 444 48.4
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 2.2e-126 456.8 431 49.4
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.8e-126 456.4 476 45.4
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 4.8e-126 455.7 431 50.3
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 8.2e-126 454.9 435 49.7
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 8.2e-126 454.9 431 49.9
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 8.2e-126 454.9 441 47.6
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 1.1e-125 454.5 455 47.3
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.1e-125 454.5 476 45.2
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.4e-125 454.1 467 47.1
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.8e-125 453.8 444 47.5
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 3.1e-125 453.0 455 47.0
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 4.1e-125 452.6 431 49.2
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 7.0e-125 451.8 453 48.8
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 9.1e-125 451.4 444 48.4
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 9.1e-125 451.4 438 49.5
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 9.1e-125 451.4 493 45.4
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.0e-124 450.3 447 47.0
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.0e-124 450.3 454 46.5
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.0e-124 450.3 454 46.5
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 2.6e-124 449.9 480 45.0
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 3.5e-124 449.5 454 47.4
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 7.7e-124 448.4 447 47.7
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.7e-123 447.2 394 51.0
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 3.8e-123 446.0 498 43.0
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 3.8e-123 446.0 459 44.7
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 3.8e-123 446.0 453 48.8
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 1.1e-122 444.5 470 44.7
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.1e-122 444.5 444 48.0
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 1.1e-122 444.5 452 47.1
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 1.5e-122 444.1 457 47.0
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.5e-122 444.1 441 47.8
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 2.5e-122 443.4 498 44.2
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 4.2e-122 442.6 472 45.1
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 9.4e-122 441.4 448 46.2
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 1.2e-121 441.0 439 46.2
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.6e-121 440.7 479 46.6
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 2.7e-121 439.9 442 46.2
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 4.7e-121 439.1 440 47.7
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 4.7e-121 439.1 439 46.9
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-120 437.6 399 51.9
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 4.0e-120 436.0 456 46.1
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 6.7e-120 435.3 445 45.8
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 9.7e-119 431.4 464 45.0
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 1.3e-118 431.0 445 45.6
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.8e-118 429.9 458 45.9
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 2.8e-118 429.9 447 47.2
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 3.7e-118 429.5 444 47.7
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 1.8e-117 427.2 442 45.2
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 3.1e-117 426.4 439 47.8
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 3.1e-117 426.4 480 43.1
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.0e-116 423.7 471 43.9
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.3e-115 421.0 455 43.7
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 8.5e-115 418.3 447 44.3
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.1e-114 417.9 384 51.0
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 3.2e-114 416.4 456 46.1
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 3.6e-113 412.9 440 43.9
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 4.7e-113 412.5 447 43.2
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 1.0e-112 411.4 448 44.4
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 1.5e-111 407.5 443 44.0
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 1.3e-110 404.4 437 44.9
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 6.3e-110 402.1 402 47.8
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 7.7e-108 395.2 454 42.3
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 6.1e-105 385.6 445 42.7
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 1.7e-102 377.5 355 47.6
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 3.7e-102 376.3 439 42.1
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 1.1e-101 374.8 337 49.6
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 1.3e-99 367.9 361 45.7
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 3.3e-98 363.2 432 43.3
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 5.6e-98 362.5 466 39.1
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.6e-98 362.5 454 40.3
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 2.1e-97 360.5 441 42.2
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 3.6e-97 359.8 466 38.6
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 6.8e-96 355.5 359 47.1
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 1.5e-95 354.4 438 40.4
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.5e-95 354.4 310 51.9
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.7e-91 340.9 432 40.5
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 7.3e-90 335.5 460 39.6
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 4.4e-79 299.7 478 36.4
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 2.3e-75 287.3 448 36.8
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 2.1e-73 280.8 346 41.0
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 7.8e-60 235.7 465 33.3
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 6.6e-59 232.6 197 52.3
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.2e-55 221.9 259 40.5
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 6.4e-54 216.1 193 46.6
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 1.2e-52 211.8 368 33.4
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 2.1e-49 201.1 210 44.8
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.9e-46 190.7 155 54.2
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 6.4e-46 189.5 357 31.9
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 9.3e-45 185.7 201 47.3
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 6.9e-32 142.9 196 37.2
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 2.9e-30 137.5 508 27.4
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 4.3e-26 123.6 183 38.3
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 8.2e-25 119.4 134 45.5
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 8.5e-22 109.4 212 31.1
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 1.1e-18 99.0 90 44.4
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 4.4e-18 97.1 132 37.9
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.7e-17 95.1 92 42.4
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 8.2e-17 92.8 112 42.0
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 2.2e-14 84.7 96 41.7
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 2.7e-12 77.8 77 45.5
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 4.4e-10 70.5 66 48.5
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 7.4e-10 69.7 70 40.0
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 7.4e-10 69.7 68 41.2
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.1e-08 65.9 70 37.1
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 2.6e-07 61.2 51 52.9


User provided reference genes

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