Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_12160 Physcomitrium patens HOM05D004602 ORTHO05D005906 0.0e+00 3197.9 1644 100.0
Pp3c3_32300 Physcomitrium patens HOM05D004602 ORTHO05D005906 0.0e+00 1727.6 1287 71.3
SEGI_37933 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 0.0e+00 1182.5 1314 48.8
AagrBONN_evm.TU.Sc2ySwM_362.2771 Anthoceros agrestis HOM05D004602 ORTHO05D005906 0.0e+00 1107.4 1271 48.2
Mapoly0022s0167 Marchantia polymorpha HOM05D004602 ORTHO05D005906 0.0e+00 1092.4 1374 45.1
Nn2g14888 Nelumbo nucifera HOM05D004602 ORTHO05D005906 0.0e+00 1082.8 1360 44.4
HanXRQChr06g0176911 Helianthus annuus HOM05D004602 ORTHO05D005906 0.0e+00 1081.6 1270 46.5
TPR.G19659 Trifolium pratense HOM05D004602 ORTHO05D005906 0.0e+00 1080.5 1269 45.7
MD14G1099800 Malus domestica HOM05D004602 ORTHO05D005906 5.5e-309 1065.1 1297 46.3
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 8.0e-308 1061.2 1408 43.2
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 1.8e-307 1060.1 1255 46.8
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 5.2e-307 1058.5 1306 45.0
THA.LOC104824412 Tarenaya hassleriana HOM05D004602 ORTHO05D005906 6.7e-307 1058.1 1276 45.4
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 1.1e-306 1057.4 1293 45.2
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 3.3e-306 1055.8 1302 45.5
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 4.4e-306 1055.4 1309 44.9
MSTRG.19816 Avicennia marina HOM05D004602 ORTHO05D005906 7.5e-306 1054.7 1275 45.6
Lsat_1_v5_gn_8_82681 Lactuca sativa HOM05D004602 ORTHO05D005906 1.3e-305 1053.9 1273 45.0
Manes.08G057600 Manihot esculenta HOM05D004602 ORTHO05D005906 1.3e-305 1053.9 1261 46.5
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 1.1e-304 1050.8 1258 45.6
PGR031G1006 Punica granatum HOM05D004602 ORTHO05D005906 1.1e-304 1050.8 1264 46.0
Medtr1g051230 Medicago truncatula HOM05D004602 ORTHO05D005906 1.8e-304 1050.0 1264 45.4
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 1.8e-304 1050.0 1308 45.2
Lj1A1104G73 Lonicera japonica HOM05D004602 ORTHO05D005906 3.1e-304 1049.3 1265 45.5
Ciclev10018515m.g Citrus clementina HOM05D004602 ORTHO05D005906 4.1e-304 1048.9 1309 45.4
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 5.3e-304 1048.5 1255 45.5
DCAR_016876 Daucus carota HOM05D004602 ORTHO05D005906 5.3e-304 1048.5 1248 45.7
Migut.J01674 Erythranthe guttata HOM05D004602 ORTHO05D005906 7.0e-304 1048.1 1268 45.3
Thecc.05G139800 Theobroma cacao HOM05D004602 ORTHO05D005906 7.0e-304 1048.1 1265 45.1
FvH4_6g25220 Fragaria vesca HOM05D004602 ORTHO05D005906 2.0e-303 1046.6 1257 45.9
Potri.006G041500 Populus trichocarpa HOM05D004602 ORTHO05D005906 4.5e-303 1045.4 1272 45.1
Eucgr.A02262 Eucalyptus grandis HOM05D004602 ORTHO05D005906 7.7e-303 1044.6 1320 44.9
Gohir.A11G308300 Gossypium hirsutum HOM05D004602 ORTHO05D005906 7.7e-303 1044.6 1270 44.9
TWI53G0771 Tripterygium wilfordii HOM05D004602 ORTHO05D005906 7.7e-303 1044.6 1296 44.8
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 5.0e-302 1042.0 1261 45.5
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 5.0e-302 1042.0 1319 44.8
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 6.5e-302 1041.6 1259 45.4
Gorai.007G353800 Gossypium raimondii HOM05D004602 ORTHO05D005906 6.5e-302 1041.6 1263 45.1
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 8.5e-302 1041.2 1297 44.6
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 1.1e-301 1040.8 1254 45.5
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 1.1e-301 1040.8 1272 45.3
SGA_v2.0_scaffold105G30304 Striga asiatica HOM05D004602 ORTHO05D005906 3.2e-301 1039.3 1280 44.5
A09p49980 Brassica napus HOM05D004602 ORTHO05D005906 4.2e-301 1038.9 1267 45.6
BraA09t40448Z Brassica rapa HOM05D004602 ORTHO05D005906 4.2e-301 1038.9 1267 45.6
FAN14G4483 Fragaria x ananassa HOM05D004602 ORTHO05D005906 9.4e-301 1037.7 1254 45.9
arahy.Tifrunner.gnm1.ann1.F5KNV4 Arachis hypogaea HOM05D004602 ORTHO05D005906 2.7e-300 1036.2 1269 45.3
QL07p008767 Quercus lobata HOM05D004602 ORTHO05D005906 2.7e-300 1036.2 1282 45.2
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 2.7e-300 1036.2 1256 45.6
Cpa.g.sc5.207 Carica papaya HOM05D004602 ORTHO05D005906 1.8e-299 1033.5 1264 45.3
arahy.Tifrunner.gnm1.ann1.0AC10P Arachis hypogaea HOM05D004602 ORTHO05D005906 2.3e-299 1033.1 1270 45.3
Sabra06G0028200 Salix brachista HOM05D004602 ORTHO05D005906 2.3e-299 1033.1 1273 44.7
C08p32390 Brassica napus HOM05D004602 ORTHO05D005906 3.0e-299 1032.7 1265 45.5
CSS0013313 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 4.0e-299 1032.3 1265 44.7
CARHR167250 Cardamine hirsuta HOM05D004602 ORTHO05D005906 4.0e-299 1032.3 1271 45.2
PSO384G2446 Papaver somniferum HOM05D004602 ORTHO05D005906 8.8e-299 1031.2 1267 45.3
A04p03790 Brassica napus HOM05D004602 ORTHO05D005906 1.2e-298 1030.8 1266 45.3
Carub.0005s2386 Capsella rubella HOM05D004602 ORTHO05D005906 1.2e-298 1030.8 1300 44.4
PSO339G0660 Papaver somniferum HOM05D004602 ORTHO05D005906 1.2e-298 1030.8 1265 45.1
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 1.5e-298 1030.4 1264 45.0
BraA04t16055Z Brassica rapa HOM05D004602 ORTHO05D005906 4.4e-298 1028.9 1265 45.1
Thhalv10005748m.g Eutrema salsugineum HOM05D004602 ORTHO05D005906 2.8e-297 1026.2 1267 44.8
vmacro09030 Vaccinium macrocarpon HOM05D004602 ORTHO05D005906 4.8e-297 1025.4 1282 44.8
Sp5g05520 Schrenkiella parvula HOM05D004602 ORTHO05D005906 6.3e-297 1025.0 1262 45.0
BolC8t50853H Brassica oleracea HOM05D004602 ORTHO05D005906 8.3e-297 1024.6 1265 45.2
BolC4t25093H Brassica oleracea HOM05D004602 ORTHO05D005906 1.1e-296 1024.2 1261 44.9
FAN09G3373 Fragaria x ananassa HOM05D004602 ORTHO05D005906 1.4e-296 1023.8 1257 45.3
Sopen10g030360 Solanum pennellii HOM05D004602 ORTHO05D005906 2.4e-296 1023.1 1287 44.2
BcaC02g09900 Brassica carinata HOM05D004602 ORTHO05D005906 3.1e-296 1022.7 1261 44.8
C04p35390 Brassica napus HOM05D004602 ORTHO05D005906 3.1e-296 1022.7 1261 44.8
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 1.2e-295 1020.8 1272 44.4
AT3G57060 Arabidopsis thaliana HOM05D004602 ORTHO05D005906 4.5e-295 1018.8 1269 44.5
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 3.8e-294 1015.8 1305 43.4
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 6.5e-294 1015.0 1262 44.2
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 1.5e-293 1013.8 1307 43.8
Peaxi162Scf01378g00118 Petunia axillaris HOM05D004602 ORTHO05D005906 2.5e-293 1013.1 1274 43.6
CSS0046388 Camellia sinensis var. sinensis HOM05D004602 ORTHO05D005906 2.7e-292 1009.6 1265 44.3
SMO351G0392 Selaginella moellendorffii HOM05D004602 ORTHO05D005906 2.7e-292 1009.6 1272 44.2
CAN.G641.74 Capsicum annuum HOM05D004602 ORTHO05D005906 6.1e-292 1008.4 1256 43.9
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 1.0e-291 1007.7 1298 43.5
Haze_19715 Corylus avellana HOM05D004602 ORTHO05D005906 4.0e-291 1005.7 1266 44.6
Aa31LG10G11980 Aethionema arabicum HOM05D004602 ORTHO05D005906 3.4e-290 1002.7 1296 44.1
Hund24628 Selenicereus undatus HOM05D004602 ORTHO05D005906 5.7e-290 1001.9 1304 43.7
ECA236G3238 Erigeron canadensis HOM05D004602 ORTHO05D005906 6.3e-289 998.4 1260 44.0
Sed0020412 Sechium edule HOM05D004602 ORTHO05D005906 1.8e-288 996.9 1259 43.8
COL.COLO4_37951 Corchorus olitorius HOM05D004602 ORTHO05D005906 1.9e-285 986.9 1278 44.1
AUR62030338 Chenopodium quinoa HOM05D004602 ORTHO05D005906 3.0e-278 963.0 1272 42.8
CsaV3_3G040360 Cucumis sativus L. HOM05D004602 ORTHO05D005906 3.0e-278 963.0 1300 42.3
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 1.1e-277 961.1 1292 42.1
BcaC07g40081 Brassica carinata HOM05D004602 ORTHO05D005906 1.6e-276 957.2 1259 43.6
GSVIVG01033598001 Vitis vinifera HOM05D004602 ORTHO05D005906 2.8e-276 956.4 1294 42.7
BcaC07g40050 Brassica carinata HOM05D004602 ORTHO05D005906 6.2e-276 955.3 1339 42.0
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 6.4e-273 945.3 1207 44.7
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 2.4e-272 943.3 1308 41.7
Dinv08512 Davidia involucrata HOM05D004602 ORTHO05D005906 3.5e-271 939.5 1115 46.2
AL5G38540 Arabidopsis lyrata HOM05D004602 ORTHO05D005906 7.5e-266 921.8 1101 45.6
Atru.chr1.1489 Acer truncatum HOM05D004602 ORTHO05D005906 4.1e-264 916.0 1308 41.4
Ah.04g151080 Amaranthus hybridus HOM05D004602 ORTHO05D005906 3.9e-262 909.4 1116 44.8
Gohir.D11G323700 Gossypium hirsutum HOM05D004602 ORTHO05D005906 5.1e-262 909.1 1043 47.1
Nitab4.5_0001364g0050 Nicotiana tabacum HOM05D004602 ORTHO05D005906 2.8e-260 903.3 1302 40.6
Nitab4.5_0000571g0090 Nicotiana tabacum HOM05D004602 ORTHO05D005906 1.4e-259 901.0 1298 40.5
AUR62040826 Chenopodium quinoa HOM05D004602 ORTHO05D005906 1.8e-259 900.6 1081 45.9
CBR_g63081 Chara braunii HOM05D004602 ORTHO05D005906 1.5e-258 897.5 1266 41.5
Rhsim04G0110600 Rhododendron simsii HOM05D004602 ORTHO05D005906 1.7e-254 884.0 1379 38.8
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 4.0e-251 872.8 1263 40.9
Peaxi162Scf00970g00168 Petunia axillaris HOM05D004602 ORTHO05D005906 3.4e-250 869.8 1235 40.0
CiPaw.09G045900 Carya illinoinensis HOM05D004602 ORTHO05D005906 2.6e-242 843.6 1043 45.2
SHI28280 Sapria himalayana HOM05D004602 ORTHO05D005906 7.9e-231 805.4 1054 43.2
BcaNung07305 Brassica carinata HOM05D004602 ORTHO05D005906 3.4e-210 736.9 1065 41.9
FAN02G3171 Fragaria x ananassa HOM05D004602 ORTHO05D005906 2.9e-201 707.2 847 47.0
MCO05G584 Micromonas commoda HOM05D004602 ORTHO05D005906 7.0e-179 632.9 1316 33.0
CANSAT56G2079 Cannabis sativa HOM05D004602 ORTHO05D005906 1.7e-177 628.2 687 49.3
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 2.1e-175 621.3 1241 32.2
CiPaw.16G087800 Carya illinoinensis HOM05D004602 ORTHO05D005906 2.7e-122 444.9 836 37.8
MBI13_g01621_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.1e-99 369.8 579 37.8
Cfa024947 Carpinus fangiana HOM05D004602 ORTHO05D005906 6.7e-97 360.5 1171 27.2
COL.COLO4_37953 Corchorus olitorius HOM05D004602 ORTHO05D005906 3.1e-94 351.7 539 40.1
Haze_26650 Corylus avellana HOM05D004602 ORTHO05D005906 1.0e-81 310.1 1095 25.3
CDE04G1839 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 1.7e-71 276.2 383 42.3
FvH4_6g26040 Fragaria vesca HOM05D004602 ORTHO05D005906 1.3e-55 223.4 350 40.3
Cre10.g432500 Chlamydomonas reinhardtii HOM05D004602 ORTHO05D005906 1.2e-50 206.8 1394 21.4
SEGI_14640 Sequoiadendron giganteum HOM05D004602 ORTHO05D005906 1.1e-46 193.7 220 45.9
SalBow8G3517 Salvia bowleyana HOM05D004602 ORTHO05D005906 3.1e-33 149.1 189 40.7
SalBow8G5198 Salvia bowleyana HOM05D004602 ORTHO05D005906 3.1e-33 149.1 189 40.7
SalBow8G5420 Salvia bowleyana HOM05D004602 ORTHO05D005906 4.6e-29 135.2 143 42.7
Lalb_Chr06g0173621 Lupinus albus HOM05D004602 ORTHO05D005906 6.4e-23 114.8 207 36.7
MBI15_g03986_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 8.4e-23 114.4 211 32.2
MBI08_g38609_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.4e-22 113.6 140 45.7
MBI08_g40283_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.4e-22 113.6 140 45.7
MBI13_g41158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.6e-21 110.2 218 31.2
SHI28279 Sapria himalayana HOM05D004602 ORTHO05D005906 2.1e-21 109.8 167 35.9
MBI13_g41314_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 3.9e-20 105.5 219 30.1
MBI06_g41970_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.5e-19 103.6 178 32.6
CDE04G0055 Ceratophyllum demersum HOM05D004602 ORTHO05D005906 2.5e-19 102.8 107 42.1
MBI08_g39158_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.7e-18 98.6 116 46.6
Hma1.2p1_0682F.1_g202500 Hydrangea macrophylla HOM05D004602 ORTHO05D005906 7.6e-16 91.3 93 43.0
MELO3C008538.2 Cucumis melo HOM05D004602 ORTHO05D005906 2.7e-13 82.8 56 67.9
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 1.0e-12 80.9 84 51.2
MBI13_g46003_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 2.5e-11 76.3 106 40.6
Lalb_Chr06g0173611 Lupinus albus HOM05D004602 ORTHO05D005906 9.6e-11 74.3 56 67.9
MBI05_g18177_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 8.1e-10 71.2 74 52.7
MBI11_g15185_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.8e-09 70.1 77 50.6
HanXRQChr05g0161121 Helianthus annuus HOM05D004602 ORTHO05D005906 6.9e-09 68.2 103 38.8
Lalb_Chr06g0173601 Lupinus albus HOM05D004602 ORTHO05D014120 9.0e-09 67.8 79 39.2
MBI16_g48278_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 4.5e-08 65.5 69 50.7
MBI05_g39343_MAGBIO Magnolia biondii HOM05D004602 ORTHO05D005906 1.3e-07 63.9 71 50.7
Psat7g124520 Pisum sativum HOM05D004602 ORTHO05D030491 6.4e-07 61.6 77 42.9
Psat7g124600 Pisum sativum HOM05D004602 ORTHO05D030491 6.4e-07 61.6 77 42.9
PGSC0003DMG400020858 Solanum tuberosum HOM05D004602 ORTHO05D005906 3.2e-06 59.3 98 34.7
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 5.4e-06 58.5 63 44.4


User provided reference genes

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