Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_11660 Physcomitrium patens HOM05D011917 ORTHO05D008140 0.0e+00 1156.4 584 100.0
Pp3c3_22020 Physcomitrium patens HOM05D011917 ORTHO05D008140 1.9e-251 872.5 525 80.8
AagrBONN_evm.TU.Sc2ySwM_368.911 Anthoceros agrestis HOM05D011917 ORTHO05D008140 3.4e-205 718.8 570 61.2
SEGI_03574 Sequoiadendron giganteum HOM05D011917 ORTHO05D008140 6.1e-202 708.0 603 58.4
Mapoly0014s0107 Marchantia polymorpha HOM05D011917 ORTHO05D008140 2.2e-188 662.9 558 58.2
CBR_g17667 Chara braunii HOM05D011917 ORTHO05D008140 2.7e-149 533.1 516 54.1
Cre10.g442800 Chlamydomonas reinhardtii HOM05D011917 ORTHO05D008140 1.4e-121 441.0 605 42.5
Cre10.g433200 Chlamydomonas reinhardtii HOM05D011917 ORTHO05D008140 6.9e-121 438.7 606 42.4
Cre10.g433250 Chlamydomonas reinhardtii HOM05D011917 ORTHO05D008140 6.9e-121 438.7 606 42.4
Cre10.g442600 Chlamydomonas reinhardtii HOM05D011917 ORTHO05D008140 1.3e-119 434.5 611 41.7
MCO14G577 Micromonas commoda HOM05D011917 ORTHO05D008140 1.2e-117 427.9 574 43.0
MCO14G576 Micromonas commoda HOM05D011917 ORTHO05D008140 1.3e-116 424.5 609 41.4
PRCOL_00006898 Prasinoderma coloniale HOM05D011917 ORTHO05D008140 3.8e-111 406.4 559 42.4
Cfa022348 Carpinus fangiana HOM05D011917 ORTHO05D008140 1.2e-101 374.8 560 39.8
Pp3s46_310 Physcomitrium patens HOM05D000323 ORTHO05D034614 2.8e-13 81.3 354 23.4
Ca_29155_v3 Cicer arietinum L. HOM05D011917 ORTHO05D008140 1.5e-11 75.5 328 26.5
Hund09414 Selenicereus undatus HOM05D000323 ORTHO05D000201 4.2e-09 67.4 526 23.0
AL1G21350 Arabidopsis lyrata HOM05D000323 ORTHO05D000201 1.6e-08 65.5 566 21.4
Hund02716 Selenicereus undatus HOM05D000323 ORTHO05D000201 1.6e-08 65.5 517 22.4
BcaC04g20844 Brassica carinata HOM05D000323 ORTHO05D000201 3.5e-08 64.3 515 22.9
Sp1g09190 Schrenkiella parvula HOM05D000323 ORTHO05D000201 3.5e-08 64.3 535 22.6
Medtr5g035180 Medicago truncatula HOM05D000323 ORTHO05D000201 4.6e-08 63.9 526 22.2
RhsimUnG0124000 Rhododendron simsii HOM05D000323 ORTHO05D000201 4.6e-08 63.9 530 20.8
THA.LOC104825598 Tarenaya hassleriana HOM05D000323 ORTHO05D000201 6.0e-08 63.5 521 22.5
Potri.010G095500 Populus trichocarpa HOM05D000323 ORTHO05D000201 7.9e-08 63.2 526 22.8
Sabra10G0068100 Salix brachista HOM05D000323 ORTHO05D000201 7.9e-08 63.2 526 23.0
Carub.0001s0998 Capsella rubella HOM05D000323 ORTHO05D000201 1.7e-07 62.0 526 22.8
DCAR_009876 Daucus carota HOM05D000323 ORTHO05D000201 2.3e-07 61.6 385 23.9
Phvul.009G181000 Phaseolus vulgaris HOM05D000323 ORTHO05D000201 2.3e-07 61.6 513 22.0
Potri.008G146400 Populus trichocarpa HOM05D000323 ORTHO05D000201 2.3e-07 61.6 556 22.5
AUR62033885 Chenopodium quinoa HOM05D000323 ORTHO05D000201 3.0e-07 61.2 565 21.6
Lj3A1049G56 Lonicera japonica HOM05D000323 ORTHO05D000201 3.0e-07 61.2 533 22.0
QL10p013441 Quercus lobata HOM05D000323 ORTHO05D000201 3.0e-07 61.2 527 23.3
SMO201G0183 Selaginella moellendorffii HOM05D000323 ORTHO05D000201 3.0e-07 61.2 473 21.4
Carub.0008s0989 Capsella rubella HOM05D000323 ORTHO05D000201 3.9e-07 60.8 512 22.1
Zm00001eb062920 Zea mays HOM05D000323 ORTHO05D000201 3.9e-07 60.8 518 21.8
ATR0820G281 Amborella trichopoda HOM05D000323 ORTHO05D000201 5.1e-07 60.5 532 20.3
Cpa.g.sc110.30 Carica papaya HOM05D000323 ORTHO05D000201 5.1e-07 60.5 517 22.4
Sopen06g027630 Solanum pennellii HOM05D000323 ORTHO05D000201 5.1e-07 60.5 520 21.2
AT5G49990 Arabidopsis thaliana HOM05D000323 ORTHO05D000201 6.6e-07 60.1 515 22.9
Cfa019081 Carpinus fangiana HOM05D000323 ORTHO05D000201 6.6e-07 60.1 517 22.6
Ciclev10019673m.g Citrus clementina HOM05D000323 ORTHO05D000201 6.6e-07 60.1 515 21.7
PGR083G0714 Punica granatum HOM05D000323 ORTHO05D000201 6.6e-07 60.1 542 22.7
Sp2g04560 Schrenkiella parvula HOM05D000323 ORTHO05D000201 6.6e-07 60.1 528 22.9
BcaB08g35369 Brassica carinata HOM05D000323 ORTHO05D000201 8.7e-07 59.7 515 22.7
CARHR258720 Cardamine hirsuta HOM05D000323 ORTHO05D000201 8.7e-07 59.7 514 23.0
MD06G1178600 Malus domestica HOM05D000323 ORTHO05D000201 8.7e-07 59.7 563 21.8
Rhsim11G0152300 Rhododendron simsii HOM05D000323 ORTHO05D000201 8.7e-07 59.7 529 20.8
Actinidia06510 Actinidia chinensis HOM05D000323 ORTHO05D000201 1.1e-06 59.3 556 21.6
Oeu022172.1 Olea europaea HOM05D000323 ORTHO05D000201 1.1e-06 59.3 518 22.4
Pp3c13_10930 Physcomitrium patens HOM05D000323 ORTHO05D000201 1.1e-06 59.3 553 19.9
Sc12g0005510 Simmondsia chinensis HOM05D000323 ORTHO05D000201 1.1e-06 59.3 463 24.0
TPR.G15078 Trifolium pratense HOM05D000323 ORTHO05D000201 1.1e-06 59.3 518 22.4
Cre17.g716800 Chlamydomonas reinhardtii HOM05D000323 ORTHO05D000201 1.5e-06 58.9 458 23.6
DCAR_016499 Daucus carota HOM05D000323 ORTHO05D000201 1.5e-06 58.9 526 23.6
Lalb_Chr07g0182601 Lupinus albus HOM05D000323 ORTHO05D000201 1.5e-06 58.9 517 21.9
Oeu039486.1 Olea europaea HOM05D000323 ORTHO05D000201 1.5e-06 58.9 522 21.6
Prupe.1G258700 Prunus persica HOM05D000323 ORTHO05D000201 1.5e-06 58.9 528 22.5
Ca_16203_v3 Cicer arietinum L. HOM05D000323 ORTHO05D000201 1.9e-06 58.5 517 22.4
Dinv24896 Davidia involucrata HOM05D000323 ORTHO05D000201 1.9e-06 58.5 531 21.5
Migut.L01439 Erythranthe guttata HOM05D000323 ORTHO05D000201 1.9e-06 58.5 527 22.0
Lalb_Chr12g0201481 Lupinus albus HOM05D000323 ORTHO05D000201 1.9e-06 58.5 517 21.5
MD14G1185000 Malus domestica HOM05D000323 ORTHO05D000201 1.9e-06 58.5 546 21.6
Prupe.5G177700 Prunus persica HOM05D000323 ORTHO05D000201 1.9e-06 58.5 545 21.7
Sp6g11820 Schrenkiella parvula HOM05D000323 ORTHO05D000201 1.9e-06 58.5 515 22.3
Solyc03g114030.3 Solanum lycopersicum HOM05D000323 ORTHO05D000201 1.9e-06 58.5 520 21.7
Sopen03g033080 Solanum pennellii HOM05D000323 ORTHO05D000201 1.9e-06 58.5 520 21.7
TWI15G0698 Tripterygium wilfordii HOM05D000323 ORTHO05D000201 1.9e-06 58.5 518 21.0
BcaB04g20247 Brassica carinata HOM05D000323 ORTHO05D000201 2.5e-06 58.2 528 22.3
CARHR276700 Cardamine hirsuta HOM05D000323 ORTHO05D000201 2.5e-06 58.2 512 22.5
Gohir.A12G019400 Gossypium hirsutum HOM05D000323 ORTHO05D000201 2.5e-06 58.2 516 22.3
TWI18G0482 Tripterygium wilfordii HOM05D000323 ORTHO05D000201 2.5e-06 58.2 526 20.5
Psat5g113960 Pisum sativum HOM05D000323 ORTHO05D000201 3.3e-06 57.8 527 22.4
PGR119G2203 Punica granatum HOM05D000323 ORTHO05D000201 3.3e-06 57.8 534 22.3
Sed0027131 Sechium edule HOM05D000323 ORTHO05D000201 3.3e-06 57.8 518 22.2
Solyc04g077720.1 Solanum lycopersicum HOM05D000323 ORTHO05D000201 3.3e-06 57.8 251 24.3
TWI60G0521 Tripterygium wilfordii HOM05D000323 ORTHO05D000201 3.3e-06 57.8 519 21.4
Aa31LG11G750 Aethionema arabicum HOM05D000323 ORTHO05D000201 4.3e-06 57.4 517 22.4
ATR0767G046 Amborella trichopoda HOM05D000323 ORTHO05D000201 4.3e-06 57.4 467 19.9
COL.COLO4_32501 Corchorus olitorius HOM05D000323 ORTHO05D000201 4.3e-06 57.4 462 22.1
MELO3C017112.2 Cucumis melo HOM05D000323 ORTHO05D000201 4.3e-06 57.4 518 22.2
Dinv31003 Davidia involucrata HOM05D000323 ORTHO05D000201 4.3e-06 57.4 526 21.9
Dinv31100 Davidia involucrata HOM05D000323 ORTHO05D000201 4.3e-06 57.4 526 21.9
Lj2g0009102 Lotus japonicus HOM05D000323 ORTHO05D000201 4.3e-06 57.4 524 21.2
MD13G1087500 Malus domestica HOM05D000323 ORTHO05D000201 4.3e-06 57.4 524 23.1
Manes.05G090400 Manihot esculenta HOM05D000323 ORTHO05D000201 4.3e-06 57.4 526 22.1
PSO017G6645 Papaver somniferum HOM05D000323 ORTHO05D000201 4.3e-06 57.4 516 21.1
Potri.012G077400 Populus trichocarpa HOM05D000323 ORTHO05D000201 4.3e-06 57.4 519 21.8
Actinidia15011 Actinidia chinensis HOM05D000323 ORTHO05D000201 5.6e-06 57.0 524 22.9
Actinidia27770 Actinidia chinensis HOM05D000323 ORTHO05D000201 5.6e-06 57.0 527 22.0
Aa31LG2G10200 Aethionema arabicum HOM05D000323 ORTHO05D000201 5.6e-06 57.0 528 22.2
CDE10G0860 Ceratophyllum demersum HOM05D000323 ORTHO05D000201 5.6e-06 57.0 528 22.3
Eucgr.K02873 Eucalyptus grandis HOM05D000323 ORTHO05D000201 5.6e-06 57.0 515 21.9
HanXRQChr12g0371311 Helianthus annuus HOM05D000323 ORTHO05D000201 5.6e-06 57.0 526 21.3
Manes.06G102100 Manihot esculenta HOM05D000323 ORTHO05D000201 5.6e-06 57.0 514 21.2
Manes.14G069200 Manihot esculenta HOM05D000323 ORTHO05D000201 5.6e-06 57.0 519 21.2
Oeu031123.1 Olea europaea HOM05D000323 ORTHO05D000201 5.6e-06 57.0 576 20.7
PSO478G0352 Papaver somniferum HOM05D000323 ORTHO05D000201 5.6e-06 57.0 516 20.7
TAR381G0767 Trochodendron aralioides HOM05D000323 ORTHO05D000201 5.6e-06 57.0 520 21.9
VMungo1309G1959 Vigna mungo HOM05D000323 ORTHO05D000201 5.6e-06 57.0 513 21.4
Actinidia19307 Actinidia chinensis HOM05D000323 ORTHO05D000201 7.4e-06 56.6 295 23.7
CDE10G0911 Ceratophyllum demersum HOM05D000323 ORTHO05D000201 7.4e-06 56.6 271 25.5
Thhalv10013227m.g Eutrema salsugineum HOM05D000323 ORTHO05D000201 7.4e-06 56.6 516 22.5
FvH4_5g16610 Fragaria vesca HOM05D000323 ORTHO05D000201 7.4e-06 56.6 522 22.4
FAN18G1974 Fragaria x ananassa HOM05D000323 ORTHO05D000201 7.4e-06 56.6 522 22.4
Gohir.D12G019600 Gossypium hirsutum HOM05D000323 ORTHO05D000201 7.4e-06 56.6 516 22.3
Gorai.008G019900 Gossypium raimondii HOM05D000323 ORTHO05D000201 7.4e-06 56.6 516 22.3
Lj6A801T79 Lonicera japonica HOM05D000323 ORTHO05D000201 7.4e-06 56.6 524 21.9
RcHm_v2.0_Chr7g0179541 Rosa chinensis HOM05D000323 ORTHO05D000201 7.4e-06 56.6 529 22.5
arahy.Tifrunner.gnm1.ann1.IQP8BH Arachis hypogaea HOM05D000323 ORTHO05D000201 9.6e-06 56.2 519 22.0
BcaC01g02533 Brassica carinata HOM05D000323 ORTHO05D000201 9.6e-06 56.2 512 22.1
A06p29630 Brassica napus HOM05D000323 ORTHO05D000201 9.6e-06 56.2 512 22.1
C03p63840 Brassica napus HOM05D000323 ORTHO05D000201 9.6e-06 56.2 512 22.1
BolC3t18639H Brassica oleracea HOM05D000323 ORTHO05D000201 9.6e-06 56.2 512 22.1
BraA06t25911Z Brassica rapa HOM05D000323 ORTHO05D000201 9.6e-06 56.2 512 22.1
CSS0043175 Camellia sinensis var. sinensis HOM05D000323 ORTHO05D000201 9.6e-06 56.2 521 22.3
CSS0043745 Camellia sinensis var. sinensis HOM05D000323 ORTHO05D000201 9.6e-06 56.2 521 22.3
CiPaw.11G030500 Carya illinoinensis HOM05D000323 ORTHO05D000201 9.6e-06 56.2 519 21.8
Thhalv10007311m.g Eutrema salsugineum HOM05D000323 ORTHO05D000201 9.6e-06 56.2 532 21.4
Gohir.A04G134600 Gossypium hirsutum HOM05D000323 ORTHO05D000201 9.6e-06 56.2 526 21.3
Pp3c16_880 Physcomitrium patens HOM05D000323 ORTHO05D000201 9.6e-06 56.2 458 23.4
PGR102G3063 Punica granatum HOM05D000323 ORTHO05D000201 9.6e-06 56.2 486 19.8
Solyc06g071330.4 Solanum lycopersicum HOM05D000323 ORTHO05D000201 9.6e-06 56.2 525 21.1
PGSC0003DMG400024588 Solanum tuberosum HOM05D000323 ORTHO05D000201 9.6e-06 56.2 520 21.3
HPP92_018303 Vanilla planifolia HOM05D000323 ORTHO05D000201 9.6e-06 56.2 525 23.2


User provided reference genes

Program Settings