Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 1.1e-309 1065.8 555 100.0
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 1.5e-197 693.3 561 64.5
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 5.6e-189 664.8 544 62.1
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.1e-187 660.6 550 62.4
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.4e-187 660.2 548 60.9
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 1.8e-187 659.8 559 60.1
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 4.0e-187 658.7 550 61.8
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 4.0e-187 658.7 548 60.8
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 4.0e-187 658.7 559 60.1
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 1.2e-186 657.1 549 60.8
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 4.4e-186 655.2 549 61.0
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 4.4e-186 655.2 545 60.6
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 1.3e-185 653.7 557 59.6
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 2.9e-185 652.5 556 59.7
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 1.4e-184 650.2 548 61.1
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.9e-184 649.8 555 59.5
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 2.4e-184 649.4 549 60.5
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.4e-184 649.4 555 59.3
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.2e-184 649.0 555 59.5
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 4.2e-184 648.7 548 60.6
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 1.2e-183 647.1 546 60.1
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.1e-183 646.4 548 60.8
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.1e-183 646.4 545 59.4
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 2.7e-183 646.0 561 59.9
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 3.5e-183 645.6 545 59.3
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 4.6e-183 645.2 548 60.6
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 6.0e-183 644.8 549 59.7
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 6.0e-183 644.8 557 59.2
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 6.0e-183 644.8 542 60.1
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 1.7e-182 643.3 559 59.6
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 1.7e-182 643.3 549 59.9
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 2.3e-182 642.9 542 60.5
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.9e-182 642.1 545 58.9
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 5.1e-182 641.7 557 59.2
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 6.6e-182 641.3 546 60.1
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 8.7e-182 641.0 563 58.6
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 8.7e-182 641.0 548 59.9
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 1.1e-181 640.6 542 59.6
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 1.5e-181 640.2 542 59.2
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 1.9e-181 639.8 540 60.0
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.9e-181 639.8 549 59.7
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.3e-181 639.0 551 59.2
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 4.3e-181 638.6 548 60.0
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 4.3e-181 638.6 550 60.0
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 4.3e-181 638.6 549 59.2
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.3e-181 638.6 551 59.3
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 4.3e-181 638.6 545 60.2
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 4.3e-181 638.6 560 58.9
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 1.3e-180 637.1 552 58.3
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.6e-180 636.7 548 60.0
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 2.1e-180 636.3 546 59.7
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 2.1e-180 636.3 548 60.0
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 2.8e-180 636.0 559 58.5
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 3.6e-180 635.6 547 60.3
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 3.6e-180 635.6 542 59.6
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 4.8e-180 635.2 548 59.7
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 4.8e-180 635.2 557 57.8
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 6.2e-180 634.8 542 59.4
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 6.2e-180 634.8 557 57.8
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 6.2e-180 634.8 547 60.1
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 1.1e-179 634.0 548 60.2
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 1.4e-179 633.6 542 59.2
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.4e-179 633.6 550 58.7
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 1.4e-179 633.6 561 57.2
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 2.4e-179 632.9 549 58.7
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 3.1e-179 632.5 580 56.7
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 5.3e-179 631.7 556 57.9
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 1.2e-178 630.6 562 57.8
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 1.2e-178 630.6 550 57.8
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 1.5e-178 630.2 542 59.6
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 1.5e-178 630.2 554 59.6
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.5e-178 630.2 550 58.5
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 2.0e-178 629.8 553 58.0
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 3.4e-178 629.0 556 57.7
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 3.4e-178 629.0 542 59.0
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 3.4e-178 629.0 549 56.8
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 5.8e-178 628.2 557 56.9
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 5.8e-178 628.2 525 61.5
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 7.6e-178 627.9 540 59.4
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 9.9e-178 627.5 551 58.3
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.3e-177 627.1 561 57.2
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 1.3e-177 627.1 547 58.1
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 3.8e-177 625.5 540 59.1
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 4.9e-177 625.2 553 56.8
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 4.9e-177 625.2 600 55.3
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 6.4e-177 624.8 547 58.9
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 6.4e-177 624.8 548 59.9
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 8.4e-177 624.4 542 59.2
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 8.4e-177 624.4 542 59.2
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 8.4e-177 624.4 550 58.5
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 1.1e-176 624.0 548 58.6
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 1.4e-176 623.6 540 59.1
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.4e-176 623.6 557 56.4
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 1.9e-176 623.2 549 57.4
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 2.4e-176 622.9 542 59.0
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.2e-176 622.1 601 55.7
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 4.2e-176 622.1 554 56.0
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 7.1e-176 621.3 617 54.3
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.2e-175 620.5 547 58.5
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.5e-175 619.0 576 55.9
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 4.6e-175 618.6 529 59.5
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.8e-174 616.7 536 59.1
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 1.8e-174 616.7 546 58.8
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 2.3e-174 616.3 528 60.4
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 5.1e-174 615.1 584 55.1
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 4.3e-173 612.1 552 56.7
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 1.3e-172 610.5 524 59.5
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 2.1e-172 609.8 533 58.0
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 3.1e-171 605.9 553 56.4
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 2.0e-170 603.2 594 54.4
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 4.5e-170 602.1 556 56.3
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 1.2e-167 594.0 512 59.4
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 2.7e-167 592.8 543 56.7
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.3e-166 590.5 627 51.0
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 4.3e-165 585.5 551 55.5
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 1.6e-164 583.6 590 52.9
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 8.2e-164 581.3 553 54.8
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 2.6e-162 576.2 503 58.4
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.6e-159 567.0 572 52.8
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 3.3e-157 559.3 447 62.4
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 1.6e-156 557.0 545 54.3
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 5.5e-152 542.0 553 53.2
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.0e-150 537.7 477 57.4
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 2.3e-150 536.6 476 57.8
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 4.3e-149 532.3 469 57.4
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 1.1e-141 507.7 528 51.1
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 2.0e-141 506.9 555 50.5
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.6e-130 470.7 414 58.9
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 2.2e-124 450.3 384 59.9
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 2.2e-124 450.3 384 59.9
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 3.1e-123 446.4 359 63.8
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 3.5e-122 443.0 382 59.7
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.6e-111 407.5 351 61.5
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 3.4e-101 373.2 314 60.5
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 8.3e-92 342.0 335 55.5
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 3.9e-89 333.2 272 58.5
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.2e-85 321.6 220 70.5
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 1.7e-68 264.6 195 63.1
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.4e-59 235.0 214 54.7
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 2.7e-50 204.1 177 59.9
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 6.0e-42 176.4 141 61.7
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 1.8e-38 164.9 151 51.0
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 1.9e-35 154.8 146 51.4
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 6.1e-34 149.8 117 60.7
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 5.0e-28 130.2 188 38.8
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 6.5e-20 103.2 127 47.2
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 4.2e-19 100.5 91 51.6
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 3.5e-13 80.9 109 40.4
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 6.5e-12 76.6 81 54.3
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 3.2e-11 74.3 74 51.4
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 5.5e-11 73.6 107 43.9
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 2.7e-10 71.2 75 52.0
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 3.4e-08 64.3 76 48.7


User provided reference genes

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