Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 1.6e-180 636.0 312 100.0
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 1.5e-90 337.0 302 54.0
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 7.5e-90 334.7 320 51.6
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 2.8e-89 332.8 300 53.3
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 3.7e-89 332.4 310 53.5
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 4.8e-89 332.0 303 51.5
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 4.8e-89 332.0 303 52.5
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 6.3e-89 331.6 306 52.9
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 1.8e-88 330.1 311 52.1
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.0e-88 328.2 303 52.8
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 2.0e-87 326.6 301 52.2
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 2.0e-87 326.6 300 51.3
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 2.7e-87 326.2 309 51.1
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 4.5e-87 325.5 304 53.0
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 5.9e-87 325.1 311 51.4
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 7.7e-87 324.7 301 51.8
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.0e-86 324.3 303 52.5
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 2.2e-86 323.2 305 51.1
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 3.8e-86 322.4 305 50.5
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 8.5e-86 321.2 306 52.6
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 1.1e-85 320.9 311 50.8
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.1e-85 320.9 302 51.3
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 1.5e-85 320.5 299 50.5
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 1.9e-85 320.1 301 49.8
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 2.5e-85 319.7 310 50.0
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 2.5e-85 319.7 305 50.2
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 3.2e-85 319.3 311 50.8
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 3.2e-85 319.3 306 51.0
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 4.2e-85 318.9 301 49.8
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 4.2e-85 318.9 308 50.6
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 7.2e-85 318.2 298 50.3
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 7.2e-85 318.2 298 51.0
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 7.2e-85 318.2 300 51.3
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 7.2e-85 318.2 302 51.0
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 1.2e-84 317.4 308 50.0
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.1e-84 316.6 306 52.0
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 3.6e-84 315.8 303 51.5
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 4.7e-84 315.5 300 50.0
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 4.7e-84 315.5 301 51.2
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 1.4e-83 313.9 308 48.7
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 1.8e-83 313.5 302 52.0
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 2.3e-83 313.2 306 51.3
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 6.8e-83 311.6 299 51.5
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 6.8e-83 311.6 296 52.4
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 6.8e-83 311.6 310 49.0
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 2.0e-82 310.1 304 51.0
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 2.0e-82 310.1 304 50.7
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 5.7e-82 308.5 308 49.4
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 5.7e-82 308.5 311 48.6
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 7.5e-82 308.1 306 49.3
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 7.5e-82 308.1 306 49.3
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 7.5e-82 308.1 307 47.9
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 1.3e-81 307.4 298 49.7
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 2.2e-81 306.6 301 49.8
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 2.8e-81 306.2 298 50.0
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.7e-81 305.8 301 50.5
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 4.9e-81 305.4 307 48.5
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 8.3e-81 304.7 302 48.3
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 1.8e-80 303.5 308 49.7
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 2.4e-80 303.1 306 50.0
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 2.4e-80 303.1 307 48.5
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 3.1e-80 302.8 303 47.5
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 4.1e-80 302.4 299 49.5
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 5.4e-80 302.0 304 47.4
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 7.0e-80 301.6 299 48.5
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 7.0e-80 301.6 305 49.2
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 9.2e-80 301.2 298 49.3
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 1.2e-79 300.8 305 48.5
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 1.6e-79 300.4 312 50.3
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.6e-79 300.4 301 50.2
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 3.5e-79 299.3 315 47.3
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 5.9e-79 298.5 306 48.0
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 1.3e-78 297.4 307 47.9
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 1.7e-78 297.0 294 49.0
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 5.0e-78 295.4 293 50.2
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 6.6e-78 295.0 295 51.2
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 8.6e-78 294.7 300 49.7
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 1.1e-77 294.3 310 45.5
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 1.9e-77 293.5 300 49.0
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 1.9e-77 293.5 290 49.3
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 9.5e-77 291.2 305 47.9
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.1e-76 290.0 298 47.7
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 8.0e-76 288.1 292 49.3
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 1.0e-75 287.7 293 47.8
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 1.0e-75 287.7 300 49.0
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 3.4e-74 282.7 301 46.8
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 3.4e-74 282.7 298 48.0
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 3.4e-74 282.7 299 48.5
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.4e-74 282.3 295 48.5
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 5.7e-74 282.0 298 47.7
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 9.8e-74 281.2 295 48.5
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.8e-74 281.2 295 47.8
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 1.3e-73 280.8 316 47.8
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.7e-73 280.4 295 49.2
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.7e-73 280.4 295 49.2
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 2.2e-73 280.0 352 42.6
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 3.7e-73 279.3 270 49.6
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.9e-73 278.9 295 48.1
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.8e-72 276.9 227 53.7
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 1.8e-72 276.9 305 47.2
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 2.4e-72 276.6 299 46.5
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.2e-72 276.2 294 47.3
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.2e-72 276.2 294 47.3
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.2e-72 276.2 295 48.1
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 3.2e-72 276.2 298 47.0
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 4.1e-72 275.8 298 46.0
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 5.4e-72 275.4 295 48.1
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 1.6e-71 273.9 298 46.0
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 2.0e-71 273.5 298 45.3
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 2.0e-71 273.5 298 45.3
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 4.6e-71 272.3 298 46.3
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 5.9e-71 271.9 270 47.0
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 1.3e-70 270.8 310 43.2
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 2.3e-70 270.0 298 46.6
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 5.0e-70 268.9 299 45.2
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 5.0e-70 268.9 299 45.2
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 6.6e-70 268.5 300 45.0
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 3.3e-69 266.2 261 49.8
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.3e-69 266.2 294 48.0
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.3e-69 265.0 227 52.9
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 9.5e-69 264.6 306 45.4
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.6e-68 263.8 303 45.9
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 3.1e-67 259.6 342 39.2
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 4.3e-61 239.2 313 39.9
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 8.1e-60 235.0 306 43.5
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-59 234.6 206 54.4
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 5.8e-58 228.8 189 55.0
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 4.9e-57 225.7 307 41.7
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 7.8e-55 218.4 194 52.1
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 3.9e-54 216.1 251 44.2
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.3e-53 213.0 211 46.9
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 3.6e-44 183.0 149 55.0
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 9.3e-40 168.3 168 44.6
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 1.1e-37 161.4 142 52.8
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 7.1e-32 142.1 333 30.9
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 8.7e-30 135.2 158 46.8
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 4.0e-27 126.3 203 36.9
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 2.9e-25 120.2 154 42.9
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 1.1e-24 118.2 130 50.0
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 5.5e-24 115.9 123 45.5
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 2.5e-21 107.1 77 61.0
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 8.2e-20 102.1 225 33.8
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 9.0e-19 98.6 230 32.2
Pp3c8_2710 Physcomitrium patens HOM05D004773 ORTHO05D005943 1.7e-17 94.4 100 45.0
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 4.9e-17 92.8 269 27.5
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 5.5e-16 89.4 227 24.2
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 3.7e-12 76.6 279 23.7
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 2.6e-10 70.5 84 41.7
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 5.9e-10 69.3 47 55.3
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.0e-09 68.6 101 43.6
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.9e-08 64.3 49 55.1
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.1e-07 60.8 84 46.4
Glyma.09G113200 Glycine max HOM05D004773 ORTHO05D005943 2.1e-07 60.8 61 37.7
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 4.6e-07 59.7 52 50.0
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 7.9e-07 58.9 260 26.2
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 3.0e-06 57.0 243 28.0
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 3.9e-06 56.6 198 27.3


User provided reference genes

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