Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 4.8e-76 287.7 144 100.0
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 6.1e-63 244.2 144 79.9
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 1.1e-56 223.4 140 74.3
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 3.3e-56 221.9 142 71.1
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 5.6e-56 221.1 144 71.5
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 5.6e-56 221.1 142 71.1
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 9.5e-56 220.3 142 71.1
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.2e-55 219.9 142 72.5
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 1.2e-55 219.9 142 71.1
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 1.6e-55 219.5 142 71.1
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 1.6e-55 219.5 142 71.8
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 1.6e-55 219.5 138 72.5
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 2.8e-55 218.8 142 70.4
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 2.8e-55 218.8 142 70.4
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 3.6e-55 218.4 144 70.8
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 3.6e-55 218.4 144 70.1
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 3.6e-55 218.4 142 70.4
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 3.6e-55 218.4 138 73.2
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 4.7e-55 218.0 142 70.4
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 4.7e-55 218.0 144 70.1
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 4.7e-55 218.0 144 71.5
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 6.1e-55 217.6 142 70.4
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 6.1e-55 217.6 142 69.0
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 1.0e-54 216.9 144 69.4
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 1.0e-54 216.9 144 69.4
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 1.0e-54 216.9 144 70.8
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 1.4e-54 216.5 142 69.7
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 1.4e-54 216.5 142 69.7
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 1.8e-54 216.1 142 70.4
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 1.8e-54 216.1 142 69.7
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 1.8e-54 216.1 144 69.4
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 2.3e-54 215.7 142 69.0
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 3.0e-54 215.3 142 69.7
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 3.0e-54 215.3 142 69.7
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 3.0e-54 215.3 142 69.7
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 4.0e-54 214.9 142 69.7
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 4.0e-54 214.9 142 69.0
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 5.2e-54 214.5 142 69.0
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 6.8e-54 214.2 142 69.0
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 6.8e-54 214.2 142 69.0
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 6.8e-54 214.2 142 69.0
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 6.8e-54 214.2 144 68.1
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 6.8e-54 214.2 138 71.0
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 6.8e-54 214.2 138 71.7
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 6.8e-54 214.2 144 70.1
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 8.9e-54 213.8 142 68.3
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 8.9e-54 213.8 138 71.0
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 1.2e-53 213.4 142 68.3
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 1.2e-53 213.4 142 69.0
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 1.2e-53 213.4 142 69.0
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 1.5e-53 213.0 144 67.4
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 1.5e-53 213.0 144 67.4
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 1.5e-53 213.0 144 67.4
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 1.5e-53 213.0 144 68.8
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 1.5e-53 213.0 142 67.6
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 2.0e-53 212.6 138 69.6
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 2.6e-53 212.2 138 70.3
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 2.6e-53 212.2 142 68.3
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 2.6e-53 212.2 138 70.3
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 2.6e-53 212.2 144 68.1
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 3.4e-53 211.8 142 69.0
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 3.4e-53 211.8 138 69.6
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.4e-53 211.8 138 69.6
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 3.4e-53 211.8 142 68.3
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 3.4e-53 211.8 138 70.3
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 3.4e-53 211.8 138 70.3
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 3.4e-53 211.8 138 70.3
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 4.4e-53 211.5 139 70.5
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 4.4e-53 211.5 136 70.6
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 4.4e-53 211.5 138 69.6
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 5.8e-53 211.1 142 67.6
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 7.5e-53 210.7 138 68.8
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 7.5e-53 210.7 136 70.6
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 7.5e-53 210.7 142 67.6
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 7.5e-53 210.7 142 69.0
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 9.8e-53 210.3 136 69.9
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.7e-52 209.5 138 68.8
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 4.9e-52 208.0 138 68.1
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 4.9e-52 208.0 144 65.3
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 4.9e-52 208.0 144 67.4
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 6.4e-52 207.6 138 68.8
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 6.4e-52 207.6 138 68.8
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 6.4e-52 207.6 138 68.1
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 6.4e-52 207.6 138 68.1
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 6.4e-52 207.6 138 68.8
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 1.4e-51 206.5 144 66.7
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 2.4e-51 205.7 138 68.8
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 3.2e-51 205.3 137 68.6
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 5.4e-51 204.5 142 66.9
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 5.4e-51 204.5 137 67.2
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.2e-50 203.4 152 63.8
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 2.0e-50 202.6 165 60.0
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 2.7e-50 202.2 168 58.9
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 4.6e-50 201.4 137 65.7
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 4.6e-50 201.4 142 65.5
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 7.8e-50 200.7 130 70.0
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 1.0e-49 200.3 137 66.4
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.7e-49 199.5 137 67.9
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 2.3e-49 199.1 137 66.4
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 2.3e-49 199.1 137 66.4
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 3.0e-49 198.7 138 67.4
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 3.0e-49 198.7 138 67.4
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 3.0e-49 198.7 138 67.4
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 3.0e-49 198.7 138 67.4
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 6.6e-49 197.6 137 65.7
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 6.6e-49 197.6 137 65.7
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 6.6e-49 197.6 138 65.9
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.1e-48 196.8 137 65.7
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.2e-47 193.4 166 57.2
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 1.2e-47 193.4 206 49.0
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 4.7e-47 191.4 138 61.6
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 2.0e-45 186.0 138 62.3
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 3.4e-45 185.3 205 48.3
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 4.4e-45 184.9 155 58.1
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 1.3e-44 183.3 129 66.7
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 2.2e-44 182.6 136 64.0
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 1.2e-42 176.8 144 58.3
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 8.6e-41 170.6 112 68.8
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.1e-38 163.7 119 63.0
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 1.5e-37 159.8 160 51.2
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 3.5e-34 148.7 97 69.1
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 6.0e-34 147.9 118 60.2
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 1.3e-33 146.7 99 66.7
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 6.8e-30 134.4 117 55.6
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 2.2e-28 129.4 145 46.9
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 4.3e-24 115.2 72 72.2
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 6.2e-23 111.3 72 69.4
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 4.0e-22 108.6 72 68.1
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 4.4e-21 105.1 67 70.1
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 9.6e-16 87.4 139 35.3
Cfa022471 Carpinus fangiana HOM05D000441 ORTHO05D124224 8.4e-12 74.3 164 31.1
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 2.1e-10 69.7 117 33.3
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 2.7e-10 69.3 43 69.8
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 1.0e-09 67.4 154 30.5
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 8.7e-09 64.3 53 54.7
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 2.1e-07 59.7 35 68.6
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 3.1e-06 55.8 138 26.8
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 4.0e-06 55.5 132 28.0


User provided reference genes

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