Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_10100 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.8e-258 894.0 464 100.0
Pp3c3_22200 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.5e-166 590.1 452 73.5
Pp3c10_16450 Physcomitrium patens HOM05D004327 ORTHO05D005032 4.0e-140 502.3 357 76.2
Pp3c5_23860 Physcomitrium patens HOM05D004327 ORTHO05D005032 2.1e-133 479.9 367 70.8
AagrBONN_evm.TU.Sc2ySwM_117.785 Anthoceros agrestis HOM05D004327 ORTHO05D005032 4.0e-132 475.7 365 69.6
Dinv43382 Davidia involucrata HOM05D004327 ORTHO05D005032 1.8e-124 450.3 367 65.1
Glyma.17G062900 Glycine max HOM05D004327 ORTHO05D005032 1.8e-124 450.3 350 68.9
Glyma.13G096600 Glycine max HOM05D004327 ORTHO05D005032 5.3e-124 448.7 362 66.3
Eucgr.C00153 Eucalyptus grandis HOM05D004327 ORTHO05D005032 6.9e-124 448.4 346 67.1
Dinv42719 Davidia involucrata HOM05D004327 ORTHO05D005032 1.5e-123 447.2 365 65.2
Atru.chr7.613 Acer truncatum HOM05D004327 ORTHO05D005032 3.4e-123 446.0 367 65.1
arahy.Tifrunner.gnm1.ann1.UF0NDT Arachis hypogaea HOM05D004327 ORTHO05D005032 4.5e-123 445.7 345 68.1
TAR343G0001 Trochodendron aralioides HOM05D004327 ORTHO05D005032 4.5e-123 445.7 362 65.5
VMungo1215G1888 Vigna mungo HOM05D004327 ORTHO05D005032 5.8e-123 445.3 345 68.4
Medtr4g127970 Medicago truncatula HOM05D004327 ORTHO05D005032 7.6e-123 444.9 343 69.1
arahy.Tifrunner.gnm1.ann1.IHC8NS Arachis hypogaea HOM05D004327 ORTHO05D005032 1.7e-122 443.7 345 67.8
CiPaw.07G192500 Carya illinoinensis HOM05D004327 ORTHO05D005032 3.8e-122 442.6 352 65.3
Phvul.003G145300 Phaseolus vulgaris HOM05D004327 ORTHO05D005032 3.8e-122 442.6 345 67.8
SMO352G0043 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 3.8e-122 442.6 355 67.9
Cpa.g.sc233.7 Carica papaya HOM05D004327 ORTHO05D005032 6.5e-122 441.8 345 67.8
Lalb_Chr07g0180501 Lupinus albus HOM05D004327 ORTHO05D005032 1.1e-121 441.0 360 65.8
MD13G1253000 Malus domestica HOM05D004327 ORTHO05D005032 1.4e-121 440.7 365 64.4
CANSAT11G1121 Cannabis sativa HOM05D004327 ORTHO05D005032 1.9e-121 440.3 345 66.4
Lj4g0017259 Lotus japonicus HOM05D004327 ORTHO05D005032 3.2e-121 439.5 351 67.2
ATR0580G352 Amborella trichopoda HOM05D004327 ORTHO05D005032 5.5e-121 438.7 382 62.6
Manes.14G154300 Manihot esculenta HOM05D004327 ORTHO05D005032 5.5e-121 438.7 362 64.6
DCAR_017971 Daucus carota HOM05D004327 ORTHO05D005032 7.1e-121 438.3 344 66.0
Prupe.1G085300 Prunus persica HOM05D004327 ORTHO05D005032 1.2e-120 437.6 365 63.3
ClCG11G012140 Citrullus lanatus HOM05D004327 ORTHO05D005032 2.7e-120 436.4 345 66.7
CsaV3_2G008420 Cucumis sativus L. HOM05D004327 ORTHO05D005032 2.7e-120 436.4 345 66.7
MD16G1257500 Malus domestica HOM05D004327 ORTHO05D005032 3.5e-120 436.0 365 63.6
Hma1.2p1_1025F.1_g249340 Hydrangea macrophylla HOM05D004327 ORTHO05D005032 7.9e-120 434.9 365 64.1
CSS0007595 Camellia sinensis var. sinensis HOM05D004327 ORTHO05D005032 3.9e-119 432.6 362 64.1
Sed0007507 Sechium edule HOM05D004327 ORTHO05D005032 3.9e-119 432.6 345 65.8
MSTRG.26218 Avicennia marina HOM05D004327 ORTHO05D005032 5.1e-119 432.2 344 64.5
Thecc.09G176900 Theobroma cacao HOM05D004327 ORTHO05D005032 6.7e-119 431.8 345 66.1
vmacro06012 Vaccinium macrocarpon HOM05D004327 ORTHO05D005032 6.7e-119 431.8 332 68.7
QL02p097831 Quercus lobata HOM05D004327 ORTHO05D005032 1.1e-118 431.0 365 62.7
Gohir.D08G093800 Gossypium hirsutum HOM05D004327 ORTHO05D005032 1.5e-118 430.6 345 66.1
Migut.K00240 Erythranthe guttata HOM05D004327 ORTHO05D005032 3.3e-118 429.5 354 64.7
PSO063G6085 Papaver somniferum HOM05D004327 ORTHO05D005032 3.3e-118 429.5 352 66.2
Gohir.A08G084200 Gossypium hirsutum HOM05D004327 ORTHO05D005032 4.3e-118 429.1 345 65.8
GSVIVG01029211001 Vitis vinifera HOM05D004327 ORTHO05D005032 5.7e-118 428.7 365 63.0
Nn8g40460 Nelumbo nucifera HOM05D004327 ORTHO05D005032 1.3e-117 427.6 349 65.3
TPR.G5449 Trifolium pratense HOM05D004327 ORTHO05D005032 1.3e-117 427.6 345 66.1
COL.COLO4_37716 Corchorus olitorius HOM05D004327 ORTHO05D005032 2.1e-117 426.8 343 65.9
Ca_21229_v3 Cicer arietinum L. HOM05D004327 ORTHO05D005032 2.8e-117 426.4 363 63.9
AL8G33390 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 3.7e-117 426.0 359 63.5
Cc06_g13210 Coffea canephora HOM05D004327 ORTHO05D005032 3.7e-117 426.0 343 65.6
ECA240G0157 Erigeron canadensis HOM05D004327 ORTHO05D005032 3.7e-117 426.0 340 65.9
Potri.018G092000 Populus trichocarpa HOM05D004327 ORTHO05D005032 6.3e-117 425.2 365 62.5
Ciclev10008675m.g Citrus clementina HOM05D004327 ORTHO05D005032 1.8e-116 423.7 365 62.7
Pp3c16_10790 Physcomitrium patens HOM05D004327 ORTHO05D005032 1.8e-116 423.7 402 59.5
Gorai.004G099500 Gossypium raimondii HOM05D004327 ORTHO05D005032 3.1e-116 422.9 374 61.8
Psat4g169000 Pisum sativum HOM05D004327 ORTHO05D005032 4.1e-116 422.5 330 67.6
CARHR109440 Cardamine hirsuta HOM05D004327 ORTHO05D005032 5.3e-116 422.2 342 66.1
Duzib168G0099 Durio zibethinus HOM05D004327 ORTHO05D005032 6.9e-116 421.8 345 64.9
Duzib150G0132 Durio zibethinus HOM05D004327 ORTHO05D005032 3.4e-115 419.5 365 62.2
Mapoly0023s0050 Marchantia polymorpha HOM05D004327 ORTHO05D005032 3.4e-115 419.5 355 63.4
RcHm_v2.0_Chr4g0402371 Rosa chinensis HOM05D004327 ORTHO05D005032 3.4e-115 419.5 366 62.0
PSO170G3199 Papaver somniferum HOM05D004327 ORTHO05D005032 5.9e-115 418.7 368 62.8
AT5G57410 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 7.6e-115 418.3 344 64.8
AL3G53050 Arabidopsis lyrata HOM05D004327 ORTHO05D005032 1.0e-114 417.9 345 64.9
Carub.0008s1793 Capsella rubella HOM05D004327 ORTHO05D005032 2.9e-114 416.4 350 62.9
HanXRQChr11g0322421 Helianthus annuus HOM05D004327 ORTHO05D005032 2.9e-114 416.4 360 61.7
Rhsim03G0264600 Rhododendron simsii HOM05D004327 ORTHO05D005032 3.8e-114 416.0 344 64.0
CARHR271210 Cardamine hirsuta HOM05D004327 ORTHO05D005032 1.9e-113 413.7 368 60.9
Thhalv10013843m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 2.5e-113 413.3 351 62.4
MSTRG.6222 Avicennia marina HOM05D004327 ORTHO05D005032 4.2e-113 412.5 361 61.2
Sp6g19130 Schrenkiella parvula HOM05D004327 ORTHO05D005032 5.5e-113 412.1 359 61.6
BolC3t13942H Brassica oleracea HOM05D004327 ORTHO05D005032 7.2e-113 411.8 345 63.5
BraA03t10592Z Brassica rapa HOM05D004327 ORTHO05D005032 7.2e-113 411.8 345 63.5
BcaB01g04457 Brassica carinata HOM05D004327 ORTHO05D005032 1.2e-112 411.0 345 63.5
C03p15000 Brassica napus HOM05D004327 ORTHO05D005032 1.6e-112 410.6 348 62.9
BolC9t54328H Brassica oleracea HOM05D004327 ORTHO05D005032 2.1e-112 410.2 343 65.0
A03p12840 Brassica napus HOM05D004327 ORTHO05D005032 2.7e-112 409.8 344 63.4
Migut.J01485 Erythranthe guttata HOM05D004327 ORTHO05D005032 7.9e-112 408.3 341 63.3
THA.LOC104811786 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.3e-111 407.5 347 62.0
CDE04G3746 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 2.3e-111 406.8 365 60.3
Sc14g0001280 Simmondsia chinensis HOM05D004327 ORTHO05D005032 2.5e-110 403.3 327 65.7
FvH4_4g08170 Fragaria vesca HOM05D004327 ORTHO05D005032 5.7e-110 402.1 394 57.6
FAN22G1646 Fragaria x ananassa HOM05D004327 ORTHO05D005032 5.7e-110 402.1 366 60.4
PGR142G4100 Punica granatum HOM05D004327 ORTHO05D005032 7.4e-110 401.7 345 62.9
Sp3g32340 Schrenkiella parvula HOM05D004327 ORTHO05D005032 7.4e-110 401.7 344 63.7
HPP92_019412 Vanilla planifolia HOM05D004327 ORTHO05D005032 7.4e-110 401.7 345 62.0
BcaC01g06496 Brassica carinata HOM05D004327 ORTHO05D005032 1.3e-109 401.0 345 62.0
Sabra18G0079100 Salix brachista HOM05D004327 ORTHO05D005032 1.1e-108 397.9 345 63.2
Thhalv10022742m.g Eutrema salsugineum HOM05D004327 ORTHO05D005032 1.4e-108 397.5 344 63.1
Solyc07g019530.3 Solanum lycopersicum HOM05D004327 ORTHO05D005032 1.8e-108 397.1 341 62.2
Sopen07g008040 Solanum pennellii HOM05D004327 ORTHO05D005032 1.8e-108 397.1 341 62.2
Aa31LG3G13300 Aethionema arabicum HOM05D004327 ORTHO05D005032 4.1e-108 396.0 355 61.1
Aqoxy7G03046 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 4.1e-108 396.0 350 61.1
Peaxi162Scf00231g00726 Petunia axillaris HOM05D004327 ORTHO05D005032 5.3e-108 395.6 341 62.2
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 1.5e-107 394.0 343 60.9
THA.LOC104813521 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 1.5e-107 394.0 330 63.6
CAN.G210.1 Capsicum annuum HOM05D004327 ORTHO05D005032 2.0e-107 393.7 328 64.3
ECA236G3505 Erigeron canadensis HOM05D004327 ORTHO05D005032 2.0e-107 393.7 344 61.0
BraA09t36853Z Brassica rapa HOM05D004327 ORTHO05D005032 2.6e-107 393.3 346 62.7
THA.LOC104803493 Tarenaya hassleriana HOM05D004327 ORTHO05D005032 3.4e-107 392.9 348 61.8
A09p12090 Brassica napus HOM05D004327 ORTHO05D005032 5.9e-107 392.1 362 61.0
Sed0007415 Sechium edule HOM05D004327 ORTHO05D005032 1.3e-106 391.0 292 69.5
Carub.0003s3311 Capsella rubella HOM05D004327 ORTHO05D005032 1.7e-106 390.6 345 61.2
SalBow6G1961 Salvia bowleyana HOM05D004327 ORTHO05D005032 1.7e-106 390.6 341 61.3
CDE07G0842 Ceratophyllum demersum HOM05D004327 ORTHO05D005032 1.1e-105 387.9 352 59.7
MBI14_g17374_MAGBIO Magnolia biondii HOM05D004327 ORTHO05D005032 1.4e-105 387.5 345 61.4
Lsat_1_v5_gn_7_54620 Lactuca sativa HOM05D004327 ORTHO05D005032 1.9e-105 387.1 338 62.1
Os08g0242900 Oryza sativa ssp. japonica HOM05D004327 ORTHO05D005032 2.5e-105 386.7 342 61.4
BcaB07g31641 Brassica carinata HOM05D004327 ORTHO05D005032 4.2e-105 386.0 344 61.6
BcaC04g22882 Brassica carinata HOM05D004327 ORTHO05D005032 7.2e-105 385.2 348 61.2
C09p14270 Brassica napus HOM05D004327 ORTHO05D005032 7.2e-105 385.2 348 61.2
Zm00001eb178290 Zea mays HOM05D004327 ORTHO05D005032 2.7e-104 383.3 345 60.0
Aa31LG8G15970 Aethionema arabicum HOM05D004327 ORTHO05D005032 5.1e-103 379.0 346 60.7
SMO137G0257 Selaginella moellendorffii HOM05D004327 ORTHO05D005032 6.7e-103 378.6 325 60.6
Hund09030 Selenicereus undatus HOM05D004327 ORTHO05D005032 8.8e-103 378.3 342 58.8
EL10Ac8g18287 Beta vulgaris HOM05D004327 ORTHO05D005032 2.5e-102 376.7 340 58.2
AUR62033220 Chenopodium quinoa HOM05D004327 ORTHO05D005032 7.4e-102 375.2 350 58.3
Lalb_Chr13g0300201 Lupinus albus HOM05D004327 ORTHO05D005032 9.7e-102 374.8 332 61.1
SHI02909 Sapria himalayana HOM05D004327 ORTHO05D005032 1.7e-101 374.0 360 57.8
Dinv41244 Davidia involucrata HOM05D004327 ORTHO05D005032 2.8e-101 373.2 298 67.8
unitig_0.g2679 Utricularia gibba HOM05D004327 ORTHO05D005032 3.1e-100 369.8 365 58.4
Actinidia17317 Actinidia chinensis HOM05D004327 ORTHO05D005032 5.3e-100 369.0 342 60.8
CiPaw.08G036000 Carya illinoinensis HOM05D004327 ORTHO05D005032 3.4e-99 366.3 368 54.9
CBR_g34541 Chara braunii HOM05D004327 ORTHO05D005032 3.6e-96 356.3 381 53.3
AUR62021302 Chenopodium quinoa HOM05D004327 ORTHO05D005032 6.7e-95 352.1 352 56.0
Lj9A24G29 Lonicera japonica HOM05D004327 ORTHO05D005032 1.3e-90 337.8 268 66.4
TAR636G3612 Trochodendron aralioides HOM05D000809 ORTHO05D001196 1.5e-89 334.3 307 61.2
CBR_g4121 Chara braunii HOM05D004327 ORTHO05D005032 6.7e-87 325.5 392 48.2
FAN17G0468 Fragaria x ananassa HOM05D004327 ORTHO05D005032 2.0e-86 323.9 318 56.3
MELO3C004022.2 Cucumis melo HOM05D004327 ORTHO05D005032 3.3e-86 323.2 274 65.0
Nitab4.5_0004572g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 4.1e-84 316.2 353 53.5
Actinidia38633 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.5e-81 307.0 277 61.7
AT2G18876 Arabidopsis thaliana HOM05D004327 ORTHO05D005032 7.2e-81 305.4 270 64.1
Haze_22092 Corylus avellana HOM05D004327 ORTHO05D005032 3.0e-79 300.1 247 63.6
Nitab4.5_0005945g0010 Nicotiana tabacum HOM05D004327 ORTHO05D005032 1.8e-76 290.8 341 50.7
Duzib170G0255 Durio zibethinus HOM05D004327 ORTHO05D005032 1.3e-74 284.6 221 69.2
Actinidia27011 Actinidia chinensis HOM05D004327 ORTHO05D005032 2.9e-74 283.5 283 59.0
BcaB01g04461 Brassica carinata HOM05D004327 ORTHO05D005032 2.8e-69 266.9 266 55.6
Actinidia02748 Actinidia chinensis HOM05D004327 ORTHO05D005032 4.7e-64 249.6 241 61.0
BcaC01g06490 Brassica carinata HOM05D004327 ORTHO05D005032 4.6e-51 206.5 174 63.2
Aqoxy4G01695 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.6e-43 181.4 124 76.6
Pp3c26_7180 Physcomitrium patens HOM05D004327 ORTHO05D005032 6.2e-32 142.9 123 58.5
BcaC01g06489 Brassica carinata HOM05D004327 ORTHO05D005032 5.8e-30 136.3 122 55.7
SEGI_01506 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 7.8e-27 125.9 105 66.7
Oeu042171.1 Olea europaea HOM05D004327 ORTHO05D005032 1.7e-26 124.8 117 56.4
Haze_22093 Corylus avellana HOM05D004327 ORTHO05D005032 1.1e-25 122.1 131 55.0
FAN17G0800 Fragaria x ananassa HOM05D004327 ORTHO05D005032 9.6e-25 119.0 117 57.3
HanXRQChr09g0245491 Helianthus annuus HOM05D000502 ORTHO05D005032 2.4e-23 114.4 86 58.1
HanXRQChr08g0229701 Helianthus annuus HOM05D000502 ORTHO05D005032 9.0e-23 112.5 77 62.3
HanXRQChr13g0404041 Helianthus annuus HOM05D000502 ORTHO05D005032 1.3e-21 108.6 83 60.2
SEGI_38031 Sequoiadendron giganteum HOM05D004327 ORTHO05D005032 1.1e-20 105.5 83 72.3
Lj9A25T20 Lonicera japonica HOM05D004327 ORTHO05D005032 1.8e-18 98.2 97 55.7
Aqoxy7G03035 Aquilegia oxysepala HOM05D004327 ORTHO05D005032 1.8e-15 88.2 125 48.0
Pp3c25_9090 Physcomitrium patens HOM05D004327 ORTHO05D005032 3.4e-14 84.0 93 54.8
PRCOL_00002192 Prasinoderma coloniale HOM05D004327 ORTHO05D005032 1.9e-12 78.2 251 27.5
BcaB05g22345 Brassica carinata HOM05D004327 ORTHO05D005032 7.1e-12 76.3 92 47.8
CiPaw.01G111100 Carya illinoinensis HOM05D002292 ORTHO05D005032 6.7e-10 69.7 75 56.0
Oeu003512.1 Olea europaea HOM05D004327 ORTHO05D005032 1.3e-08 65.5 42 71.4
Glyma.09G140000 Glycine max HOM05D004327 ORTHO05D005032 2.8e-08 64.3 66 47.0
BraA02t05921Z Brassica rapa HOM05D004327 ORTHO05D005032 1.1e-07 62.4 81 48.1
Pp3c17_9610 Physcomitrium patens HOM05D004327 ORTHO05D005032 5.3e-07 60.1 99 39.4
BcaC03g14154 Brassica carinata HOM05D004327 ORTHO05D032179 2.6e-06 57.8 58 56.9
C02p14250 Brassica napus HOM05D004327 ORTHO05D032179 7.6e-06 56.2 71 49.3


User provided reference genes

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