Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c12_10080 Physcomitrium patens HOM05D004797 ORTHO05D005752 0.0e+00 1229.5 639 100.0
Pp3c23_9320 Physcomitrium patens HOM05D004797 ORTHO05D005752 1.3e-80 305.1 195 70.8
ATR0733G130 Amborella trichopoda HOM05D004797 ORTHO05D005752 4.9e-80 303.1 316 54.1
Manes.14G004000 Manihot esculenta HOM05D004797 ORTHO05D005752 5.5e-79 299.7 270 57.4
Aa31LG10G3600 Aethionema arabicum HOM05D004797 ORTHO05D005752 7.9e-78 295.8 270 57.0
CARHR041620 Cardamine hirsuta HOM05D004797 ORTHO05D005752 1.0e-77 295.4 270 57.0
THA.LOC104817914 Tarenaya hassleriana HOM05D004797 ORTHO05D005752 1.0e-77 295.4 269 57.6
Potri.009G051400 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.8e-77 294.7 270 58.1
GSVIVG01025234001 Vitis vinifera HOM05D004797 ORTHO05D005752 3.9e-77 293.5 282 55.7
C06p06610 Brassica napus HOM05D004797 ORTHO05D005752 5.1e-77 293.1 292 54.8
Lsat_1_v5_gn_1_77340 Lactuca sativa HOM05D004797 ORTHO05D005752 5.1e-77 293.1 274 55.8
BcaC08g43313 Brassica carinata HOM05D004797 ORTHO05D005752 1.5e-76 291.6 292 54.8
Dinv36236 Davidia involucrata HOM05D004797 ORTHO05D005752 1.5e-76 291.6 270 55.9
Potri.001G256000 Populus trichocarpa HOM05D004797 ORTHO05D005752 1.5e-76 291.6 269 56.9
Carub.0001s4032 Capsella rubella HOM05D004797 ORTHO05D005752 1.9e-76 291.2 269 57.2
AL1G59340 Arabidopsis lyrata HOM05D004797 ORTHO05D005752 2.5e-76 290.8 269 57.6
Gohir.A09G112900 Gossypium hirsutum HOM05D004797 ORTHO05D005752 3.3e-76 290.4 270 56.7
ECA248G3299 Erigeron canadensis HOM05D004797 ORTHO05D005752 4.3e-76 290.0 274 52.9
RcHm_v2.0_Chr5g0052831 Rosa chinensis HOM05D004797 ORTHO05D005752 4.3e-76 290.0 274 56.6
SGA_v2.0_scaffold42G16076 Striga asiatica HOM05D004797 ORTHO05D005752 4.3e-76 290.0 277 55.6
Atru.chr3.2667 Acer truncatum HOM05D004797 ORTHO05D005752 5.6e-76 289.7 271 56.1
Thhalv10011431m.g Eutrema salsugineum HOM05D004797 ORTHO05D005752 5.6e-76 289.7 269 56.9
Sp1g38120 Schrenkiella parvula HOM05D004797 ORTHO05D005752 5.6e-76 289.7 265 58.1
TWI32G1158 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 5.6e-76 289.7 288 53.5
HPP92_012324 Vanilla planifolia HOM05D004797 ORTHO05D005752 5.6e-76 289.7 271 55.4
AT1G51450 Arabidopsis thaliana HOM05D004797 ORTHO05D005752 9.6e-76 288.9 269 57.2
TAR633G1546 Trochodendron aralioides HOM05D004797 ORTHO05D005752 1.3e-75 288.5 273 56.4
arahy.Tifrunner.gnm1.ann1.IKU8UZ Arachis hypogaea HOM05D004797 ORTHO05D005752 1.6e-75 288.1 249 59.8
BolC6t35774H Brassica oleracea HOM05D004797 ORTHO05D005752 1.6e-75 288.1 294 54.4
Ciclev10014796m.g Citrus clementina HOM05D004797 ORTHO05D005752 1.6e-75 288.1 269 56.1
arahy.Tifrunner.gnm1.ann1.BIMS8G Arachis hypogaea HOM05D004797 ORTHO05D005752 2.1e-75 287.7 249 59.8
Lalb_Chr03g0024481 Lupinus albus HOM05D004797 ORTHO05D005752 2.1e-75 287.7 247 59.5
BcaB07g33593 Brassica carinata HOM05D004797 ORTHO05D005752 2.8e-75 287.3 270 55.2
MD03G1172400 Malus domestica HOM05D004797 ORTHO05D005752 2.8e-75 287.3 221 64.3
Nn2g15211 Nelumbo nucifera HOM05D004797 ORTHO05D005752 2.8e-75 287.3 279 55.2
Sed0009811 Sechium edule HOM05D004797 ORTHO05D005752 2.8e-75 287.3 269 56.9
Dinv22162 Davidia involucrata HOM05D004797 ORTHO05D005752 6.2e-75 286.2 269 55.8
Prupe.4G254200 Prunus persica HOM05D004797 ORTHO05D005752 6.2e-75 286.2 221 64.3
Medtr4g076980 Medicago truncatula HOM05D004797 ORTHO05D005752 8.2e-75 285.8 245 59.6
SEGI_00529 Sequoiadendron giganteum HOM05D004797 ORTHO05D005752 8.2e-75 285.8 341 48.1
Nn7g36315 Nelumbo nucifera HOM05D004797 ORTHO05D005752 1.4e-74 285.0 272 57.0
Hund07473 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.4e-74 285.0 249 60.6
Eucgr.J00747 Eucalyptus grandis HOM05D004797 ORTHO05D005752 1.8e-74 284.6 279 55.6
Gohir.D09G109400 Gossypium hirsutum HOM05D004797 ORTHO05D005752 1.8e-74 284.6 269 56.1
Gorai.006G127000 Gossypium raimondii HOM05D004797 ORTHO05D005752 1.8e-74 284.6 269 56.1
Hma1.2p1_2280F.1_g318720 Hydrangea macrophylla HOM05D004797 ORTHO05D005752 3.1e-74 283.9 272 55.5
Lj1A320G11 Lonicera japonica HOM05D004797 ORTHO05D005752 4.0e-74 283.5 221 62.4
Thecc.09G237700 Theobroma cacao HOM05D004797 ORTHO05D005752 6.9e-74 282.7 269 55.4
TAR623G0783 Trochodendron aralioides HOM05D004797 ORTHO05D005752 9.0e-74 282.3 280 54.6
Lj3g0024081 Lotus japonicus HOM05D004797 ORTHO05D005752 1.2e-73 282.0 245 58.0
MSTRG.18441 Avicennia marina HOM05D004797 ORTHO05D005752 1.5e-73 281.6 286 54.9
CiPaw.14G117300 Carya illinoinensis HOM05D004797 ORTHO05D005752 1.5e-73 281.6 269 55.4
Actinidia11672 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.0e-73 281.2 269 53.9
COL.COLO4_28767 Corchorus olitorius HOM05D004797 ORTHO05D005752 2.0e-73 281.2 270 55.2
Oeu025884.1 Olea europaea HOM05D004797 ORTHO05D005752 2.0e-73 281.2 222 64.4
Sabra09G0037500 Salix brachista HOM05D004797 ORTHO05D005752 2.0e-73 281.2 293 53.6
TWI60G0872 Tripterygium wilfordii HOM05D004797 ORTHO05D005752 2.0e-73 281.2 435 42.5
Ah.06g193930 Amaranthus hybridus HOM05D004797 ORTHO05D005752 2.6e-73 280.8 246 58.9
Peaxi162Scf00004g00318 Petunia axillaris HOM05D004797 ORTHO05D005752 2.6e-73 280.8 286 52.1
Glyma.12G020200 Glycine max HOM05D004797 ORTHO05D005752 3.4e-73 280.4 222 61.7
Actinidia16344 Actinidia chinensis HOM05D004797 ORTHO05D005752 4.5e-73 280.0 221 63.8
CSS0044227 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 4.5e-73 280.0 221 62.4
MD11G1190300 Malus domestica HOM05D004797 ORTHO05D005752 4.5e-73 280.0 221 62.9
vmacro14270 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 5.8e-73 279.6 272 53.3
MELO3C015173.2 Cucumis melo HOM05D004797 ORTHO05D005752 1.0e-72 278.9 244 59.4
Aqoxy1G00230 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.3e-72 278.5 282 52.5
Glyma.11G093700 Glycine max HOM05D004797 ORTHO05D005752 1.3e-72 278.5 226 61.1
Aqoxy2G00222 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.7e-72 278.1 326 50.0
Cpa.g.sc84.33 Carica papaya HOM05D004797 ORTHO05D005752 1.7e-72 278.1 264 56.8
Rhsim01G0192400 Rhododendron simsii HOM05D004797 ORTHO05D005752 1.7e-72 278.1 279 52.3
TPR.G13744 Trifolium pratense HOM05D004797 ORTHO05D005752 1.7e-72 278.1 245 57.6
vmacro04134 Vaccinium macrocarpon HOM05D004797 ORTHO05D005752 1.7e-72 278.1 222 63.1
AUR62019327 Chenopodium quinoa HOM05D004797 ORTHO05D005752 2.2e-72 277.7 246 56.9
AUR62000146 Chenopodium quinoa HOM05D004797 ORTHO05D005752 2.9e-72 277.3 265 55.1
CsaV3_1G042960 Cucumis sativus L. HOM05D004797 ORTHO05D005752 2.9e-72 277.3 244 59.0
A06p02480 Brassica napus HOM05D004797 ORTHO05D005752 3.8e-72 276.9 222 63.1
BraA06t23454Z Brassica rapa HOM05D004797 ORTHO05D005752 4.9e-72 276.6 223 62.8
Cfa009790 Carpinus fangiana HOM05D004797 ORTHO05D005752 4.9e-72 276.6 221 62.9
ClCG03G013100 Citrullus lanatus HOM05D004797 ORTHO05D005752 4.9e-72 276.6 244 58.6
HanXRQChr01g0023561 Helianthus annuus HOM05D004797 ORTHO05D005752 4.9e-72 276.6 245 56.7
Lalb_Chr01g0001051 Lupinus albus HOM05D004797 ORTHO05D005752 4.9e-72 276.6 220 62.3
SalBow8G4383 Salvia bowleyana HOM05D004797 ORTHO05D005752 8.4e-72 275.8 221 62.0
SMO361G0750 Selaginella moellendorffii HOM05D004797 ORTHO05D005752 8.4e-72 275.8 301 51.5
MBI19_g09239_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 1.1e-71 275.4 269 52.8
Phvul.011G022800 Phaseolus vulgaris HOM05D004797 ORTHO05D005752 1.4e-71 275.0 222 61.3
Duzib170G0427 Durio zibethinus HOM05D004797 ORTHO05D005752 1.9e-71 274.6 269 54.3
Migut.D00622 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.9e-71 274.6 282 53.9
FAN21G1390 Fragaria x ananassa HOM05D004797 ORTHO05D005752 1.9e-71 274.6 275 53.8
FAN11G3886 Fragaria x ananassa HOM05D004797 ORTHO05D005752 3.2e-71 273.9 222 61.7
EL10Ac4g10215 Beta vulgaris HOM05D004797 ORTHO05D005752 4.2e-71 273.5 246 56.5
Nitab4.5_0002451g0050 Nicotiana tabacum HOM05D004797 ORTHO05D005752 4.2e-71 273.5 249 55.4
Nitab4.5_0006617g0070 Nicotiana tabacum HOM05D004797 ORTHO05D005752 4.2e-71 273.5 249 55.4
Solyc11g065370.3 Solanum lycopersicum HOM05D004797 ORTHO05D005752 5.5e-71 273.1 281 52.7
VMungo1127G0838 Vigna mungo HOM05D004797 ORTHO05D005752 5.5e-71 273.1 222 61.7
CANSAT54G0946 Cannabis sativa HOM05D004797 ORTHO05D005752 7.1e-71 272.7 271 54.6
FAN16G3639 Fragaria x ananassa HOM05D004797 ORTHO05D005752 9.3e-71 272.3 275 53.8
CAN.G717.4 Capsicum annuum HOM05D004797 ORTHO05D005752 1.6e-70 271.6 286 50.7
Mapoly0036s0095 Marchantia polymorpha HOM05D004797 ORTHO05D005752 2.1e-70 271.2 401 45.1
PGSC0003DMG400029996 Solanum tuberosum HOM05D004797 ORTHO05D005752 2.7e-70 270.8 281 52.3
SHI29796 Sapria himalayana HOM05D004797 ORTHO05D005752 3.5e-70 270.4 278 53.6
DCAR_029965 Daucus carota HOM05D004797 ORTHO05D005752 4.6e-70 270.0 274 52.9
MBI17_g23181_MAGBIO Magnolia biondii HOM05D004797 ORTHO05D005752 4.6e-70 270.0 271 53.1
Eucgr.B03708 Eucalyptus grandis HOM05D004797 ORTHO05D005752 6.0e-70 269.6 298 51.7
Sopen11g025150 Solanum pennellii HOM05D004797 ORTHO05D005752 1.0e-69 268.9 281 52.0
Hund22004 Selenicereus undatus HOM05D004797 ORTHO05D005752 1.3e-69 268.5 439 41.0
PGR142G0717 Punica granatum HOM05D004797 ORTHO05D005752 1.8e-69 268.1 279 53.0
Sc16g0011300 Simmondsia chinensis HOM05D004797 ORTHO05D005752 2.3e-69 267.7 267 55.4
PGR119G1354 Punica granatum HOM05D004797 ORTHO05D005752 1.1e-68 265.4 291 51.2
Migut.N02340 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.3e-67 261.9 409 41.3
PSO384G3237 Papaver somniferum HOM05D004797 ORTHO05D005752 2.8e-67 260.8 299 48.5
CiPaw.13G156600 Carya illinoinensis HOM05D004797 ORTHO05D005752 6.3e-67 259.6 282 51.4
HPP92_012392 Vanilla planifolia HOM05D004797 ORTHO05D005752 6.3e-67 259.6 200 61.0
MSTRG.12462 Avicennia marina HOM05D004797 ORTHO05D005752 5.3e-66 256.5 386 43.3
PSO339G1463 Papaver somniferum HOM05D004797 ORTHO05D005752 6.9e-66 256.1 299 47.8
AagrBONN_evm.TU.Sc2ySwM_228.213 Anthoceros agrestis HOM05D004797 ORTHO05D005752 2.6e-65 254.2 354 44.6
Rhsim13G0218000 Rhododendron simsii HOM05D004797 ORTHO05D005752 5.9e-65 253.1 332 45.2
PSO339G4480 Papaver somniferum HOM05D004797 ORTHO05D005752 1.3e-64 251.9 283 48.4
unitig_27.g24997 Utricularia gibba HOM05D004797 ORTHO05D005752 5.0e-64 250.0 325 46.2
Os12g0143200 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 6.5e-64 249.6 289 46.0
Os11g0146500 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 5.5e-63 246.5 307 45.6
Zm00001eb092900 Zea mays HOM05D004797 ORTHO05D005752 7.2e-63 246.1 297 47.5
Cc01_g04890 Coffea canephora HOM05D004797 ORTHO05D005752 9.3e-63 245.7 193 60.1
CSS0012701 Camellia sinensis var. sinensis HOM05D004797 ORTHO05D005752 6.7e-61 239.6 217 53.5
CBR_g54630 Chara braunii HOM05D004797 ORTHO05D005752 1.1e-60 238.8 589 36.2
QL01p004191 Quercus lobata HOM05D004797 ORTHO05D005752 1.6e-54 218.4 168 62.5
CBR_g19286 Chara braunii HOM05D004797 ORTHO05D005752 8.8e-53 212.6 317 41.3
CiPaw.13G157500 Carya illinoinensis HOM05D004797 ORTHO05D005752 9.1e-50 202.6 221 52.0
Migut.L00817 Erythranthe guttata HOM05D004797 ORTHO05D005752 5.2e-45 186.8 151 64.9
Os11g0145700 Oryza sativa ssp. japonica HOM05D004797 ORTHO05D005752 5.2e-45 186.8 232 44.0
Ca_18973_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 6.7e-45 186.4 151 64.2
Ca_29677_v3 Cicer arietinum L. HOM05D004797 ORTHO05D005752 6.7e-45 186.4 151 64.2
Haze_23164 Corylus avellana HOM05D004797 ORTHO05D005752 6.7e-45 186.4 196 55.6
Psat7g172280 Pisum sativum HOM05D004797 ORTHO05D005752 6.7e-45 186.4 151 64.2
PRCOL_00001849 Prasinoderma coloniale HOM05D004797 ORTHO05D005752 7.4e-44 183.0 266 42.1
Cre16.g670250 Chlamydomonas reinhardtii HOM05D004797 ORTHO05D005752 3.7e-43 180.6 300 37.0
Migut.L00239 Erythranthe guttata HOM05D004797 ORTHO05D005752 3.7e-43 180.6 205 52.2
FvH4_3g28490 Fragaria vesca HOM05D004797 ORTHO05D005752 1.8e-42 178.3 122 71.3
Actinidia23978 Actinidia chinensis HOM05D004797 ORTHO05D005752 2.6e-41 174.5 232 47.0
unitig_60.g25644 Utricularia gibba HOM05D004797 ORTHO05D005752 5.5e-39 166.8 430 36.3
CBR_g54627 Chara braunii HOM05D004797 ORTHO05D005752 7.2e-39 166.4 289 39.8
Zm00001eb380670 Zea mays HOM05D008064 ORTHO05D005752 3.3e-36 157.5 183 50.8
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 4.4e-36 157.1 314 36.3
CDE02G1762 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.5e-31 142.1 158 53.8
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 1.9e-31 141.7 193 46.6
Aqoxy3G03849 Aquilegia oxysepala HOM05D004797 ORTHO05D005752 1.9e-31 141.7 197 45.7
Zm00001eb115730 Zea mays HOM05D004797 ORTHO05D005752 2.7e-30 137.9 129 57.4
Zm00001eb287480 Zea mays HOM05D004797 ORTHO05D005752 4.7e-30 137.1 125 56.8
CDE02G2983 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 1.7e-24 118.6 102 58.8
CDE06G1612 Ceratophyllum demersum HOM05D004797 ORTHO05D005752 3.6e-22 110.9 285 33.7
Sed0024369 Sechium edule HOM05D004797 ORTHO05D005752 8.0e-22 109.8 221 37.1
Psat7g172360 Pisum sativum HOM05D004797 ORTHO05D005752 1.3e-19 102.4 71 60.6
Migut.L00818 Erythranthe guttata HOM05D004797 ORTHO05D005752 1.2e-14 85.9 74 52.7
Haze_25029 Corylus avellana HOM05D004874 ORTHO05D006796 1.0e-08 66.2 199 28.1
CBR_g4334 Chara braunii HOM05D004874 ORTHO05D006796 5.0e-08 63.9 229 25.3
Carub.0004s0115 Capsella rubella HOM05D004874 ORTHO05D006796 6.6e-08 63.5 212 29.7
Pp3c1_33900 Physcomitrium patens HOM05D004874 ORTHO05D006796 9.5e-07 59.7 210 26.2
Sp4g01070 Schrenkiella parvula HOM05D004874 ORTHO05D006796 9.5e-07 59.7 232 29.3
Potri.007G081900 Populus trichocarpa HOM05D004874 ORTHO05D006796 2.1e-06 58.5 257 26.5
Lj4C483G1 Lonicera japonica HOM05D003906 ORTHO05D004776 2.8e-06 58.2 154 26.0
BcaB08g35028 Brassica carinata HOM05D004874 ORTHO05D006796 3.6e-06 57.8 208 28.8
Pp3c17_14550 Physcomitrium patens HOM05D004874 ORTHO05D006796 3.6e-06 57.8 227 28.2
THA.LOC104804146 Tarenaya hassleriana HOM05D004874 ORTHO05D006796 6.2e-06 57.0 209 28.2
PGR042G0234 Punica granatum HOM05D003906 ORTHO05D004776 8.0e-06 56.6 167 26.3


User provided reference genes

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