Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_970 Physcomitrium patens HOM05D006653 ORTHO05D008346 3.5e-174 614.8 293 100.0
Pp3c2_28750 Physcomitrium patens HOM05D006653 ORTHO05D008346 2.5e-132 475.7 293 77.5
Mapoly0095s0003 Marchantia polymorpha HOM05D006653 ORTHO05D008346 2.7e-81 306.2 282 51.1
Gorai.011G290500 Gossypium raimondii HOM05D006653 ORTHO05D008346 4.9e-59 232.3 262 43.9
CsaV3_5G010530 Cucumis sativus L. HOM05D006653 ORTHO05D008346 6.4e-59 231.9 260 44.6
Sc10g0002660 Simmondsia chinensis HOM05D006653 ORTHO05D008346 6.4e-59 231.9 283 41.3
Duzib106G1369 Durio zibethinus HOM05D006653 ORTHO05D008346 1.4e-58 230.7 262 43.1
PSO339G4279 Papaver somniferum HOM05D006653 ORTHO05D008346 1.9e-58 230.3 278 41.4
Carub.0004s2256 Capsella rubella HOM05D006653 ORTHO05D008346 2.4e-58 229.9 289 41.2
Nn2g13243 Nelumbo nucifera HOM05D006653 ORTHO05D008346 5.4e-58 228.8 263 43.0
PSO801G0584 Papaver somniferum HOM05D006653 ORTHO05D008346 7.1e-58 228.4 278 42.1
Glyma.18G024100 Glycine max HOM05D006653 ORTHO05D008346 9.2e-58 228.0 266 42.1
Aa31LG5G19250 Aethionema arabicum HOM05D006653 ORTHO05D008346 1.6e-57 227.3 289 41.2
TAR633G2597 Trochodendron aralioides HOM05D006653 ORTHO05D008346 1.6e-57 227.3 266 43.2
QL08p063830 Quercus lobata HOM05D006653 ORTHO05D008346 2.1e-57 226.9 272 40.8
BcaB02g09031 Brassica carinata HOM05D006653 ORTHO05D008346 3.5e-57 226.1 289 40.8
BcaC02g12146 Brassica carinata HOM05D006653 ORTHO05D008346 3.5e-57 226.1 289 40.1
Sed0010106 Sechium edule HOM05D006653 ORTHO05D008346 6.0e-57 225.3 260 44.2
Actinidia29724 Actinidia chinensis HOM05D006653 ORTHO05D008346 7.8e-57 224.9 254 44.5
Sp4g22650 Schrenkiella parvula HOM05D006653 ORTHO05D008346 1.0e-56 224.6 295 40.3
Lalb_Chr23g0277111 Lupinus albus HOM05D006653 ORTHO05D008346 2.3e-56 223.4 240 44.6
Hma1.2p1_1013F.1_g247760 Hydrangea macrophylla HOM05D006653 ORTHO05D008346 3.0e-56 223.0 244 43.0
Phvul.001G246100 Phaseolus vulgaris HOM05D006653 ORTHO05D008346 3.9e-56 222.6 276 41.7
TWI53G0670 Tripterygium wilfordii HOM05D006653 ORTHO05D008346 5.1e-56 222.2 273 40.3
Cfa001271 Carpinus fangiana HOM05D006653 ORTHO05D008346 6.6e-56 221.9 285 41.1
Ciclev10032369m.g Citrus clementina HOM05D006653 ORTHO05D008346 6.6e-56 221.9 236 43.2
AL4G38130 Arabidopsis lyrata HOM05D006653 ORTHO05D008346 8.7e-56 221.5 289 39.1
C04p07070 Brassica napus HOM05D006653 ORTHO05D008346 8.7e-56 221.5 290 40.0
BolC4t22332H Brassica oleracea HOM05D006653 ORTHO05D008346 1.1e-55 221.1 265 41.9
MSTRG.27303 Avicennia marina HOM05D006653 ORTHO05D008346 1.5e-55 220.7 262 42.4
Thhalv10017062m.g Eutrema salsugineum HOM05D006653 ORTHO05D008346 1.9e-55 220.3 263 41.1
THA.LOC104810122 Tarenaya hassleriana HOM05D006653 ORTHO05D008346 3.3e-55 219.5 260 41.2
Medtr3g071640 Medicago truncatula HOM05D006653 ORTHO05D008346 4.3e-55 219.2 254 41.3
Oeu001415.1 Olea europaea HOM05D006653 ORTHO05D008346 4.3e-55 219.2 260 42.7
Aqoxy2G00794 Aquilegia oxysepala HOM05D006653 ORTHO05D008346 5.6e-55 218.8 263 40.3
Cc02_g06010 Coffea canephora HOM05D006653 ORTHO05D008346 5.6e-55 218.8 262 42.7
CSS0019013 Camellia sinensis var. sinensis HOM05D006653 ORTHO05D008346 9.6e-55 218.0 255 42.0
Ca_15156_v3 Cicer arietinum L. HOM05D006653 ORTHO05D008346 1.3e-54 217.6 259 43.6
SalBow3G2417 Salvia bowleyana HOM05D006653 ORTHO05D008346 3.6e-54 216.1 244 42.6
A05p06130 Brassica napus HOM05D006653 ORTHO05D008346 6.2e-54 215.3 290 39.3
Migut.F00634 Erythranthe guttata HOM05D006653 ORTHO05D008346 1.1e-53 214.5 290 40.3
GSVIVG01032749001 Vitis vinifera HOM05D006653 ORTHO05D008346 1.1e-53 214.5 296 39.9
Eucgr.G03091 Eucalyptus grandis HOM05D006653 ORTHO05D008346 1.4e-53 214.2 244 43.0
Peaxi162Scf01149g00326 Petunia axillaris HOM05D006653 ORTHO05D008346 1.4e-53 214.2 245 43.3
Lj6g0008682 Lotus japonicus HOM05D006653 ORTHO05D008346 1.8e-53 213.8 265 39.2
CiPaw.01G301500 Carya illinoinensis HOM05D006653 ORTHO05D008346 2.4e-53 213.4 284 39.4
Potri.008G073200 Populus trichocarpa HOM05D006653 ORTHO05D008346 2.4e-53 213.4 266 42.1
Prupe.2G256500 Prunus persica HOM05D006653 ORTHO05D008346 2.4e-53 213.4 260 41.2
ATR0174G059 Amborella trichopoda HOM05D006653 ORTHO05D008346 3.1e-53 213.0 288 37.8
MD01G1158200 Malus domestica HOM05D006653 ORTHO05D008346 4.0e-53 212.6 244 42.2
Thecc.10G010700 Theobroma cacao HOM05D006653 ORTHO05D008346 5.3e-53 212.2 281 38.8
FAN06G1821 Fragaria x ananassa HOM05D006653 ORTHO05D008346 9.0e-53 211.5 244 42.6
Nitab4.5_0003391g0090 Nicotiana tabacum HOM05D006653 ORTHO05D008346 9.0e-53 211.5 257 40.5
FAN01G0493 Fragaria x ananassa HOM05D006653 ORTHO05D008346 1.2e-52 211.1 241 42.7
EL10Ac2g04898 Beta vulgaris HOM05D006653 ORTHO05D008346 4.4e-52 209.1 260 39.6
CAN.G203.2 Capsicum annuum HOM05D006653 ORTHO05D008346 4.4e-52 209.1 234 41.9
BraA05t19578Z Brassica rapa HOM05D006653 ORTHO05D008346 5.8e-52 208.8 281 38.8
PGR142G3637 Punica granatum HOM05D006653 ORTHO05D008346 1.7e-51 207.2 261 39.8
SGA_v2.0_scaffold60G20961 Striga asiatica HOM05D006653 ORTHO05D008346 1.7e-51 207.2 281 40.2
TPR.G27742 Trifolium pratense HOM05D006653 ORTHO05D008346 1.7e-51 207.2 246 40.7
Nitab4.5_0000789g0140 Nicotiana tabacum HOM05D006653 ORTHO05D008346 3.8e-51 206.1 257 39.7
Solyc05g052460.3 Solanum lycopersicum HOM05D006653 ORTHO05D008346 6.4e-51 205.3 234 40.6
Sopen05g030990 Solanum pennellii HOM05D006653 ORTHO05D008346 1.1e-50 204.5 234 40.6
vmacro06946 Vaccinium macrocarpon HOM05D006653 ORTHO05D008346 1.4e-50 204.1 287 39.7
HanXRQChr09g0253161 Helianthus annuus HOM05D006653 ORTHO05D008346 2.4e-50 203.4 243 42.4
SalBow3G2982 Salvia bowleyana HOM05D006653 ORTHO05D008346 2.4e-50 203.4 266 39.1
Lsat_1_v5_gn_8_12960 Lactuca sativa HOM05D006653 ORTHO05D008346 3.2e-50 203.0 262 40.1
RcHm_v2.0_Chr1g0371041 Rosa chinensis HOM05D006653 ORTHO05D008346 7.1e-50 201.8 244 42.2
HanXRQChr17g0560871 Helianthus annuus HOM05D006653 ORTHO05D008346 1.7e-48 197.2 259 40.9
arahy.Tifrunner.gnm1.ann1.CC0JZ8 Arachis hypogaea HOM05D006653 ORTHO05D008346 2.3e-48 196.8 218 43.6
Hund13903 Selenicereus undatus HOM05D006653 ORTHO05D008346 2.3e-48 196.8 277 37.5
Lsat_1_v5_gn_9_60841 Lactuca sativa HOM05D006653 ORTHO05D008346 5.1e-48 195.7 238 40.8
Haze_17274 Corylus avellana HOM05D006653 ORTHO05D008346 8.7e-48 194.9 301 36.2
Haze_17283 Corylus avellana HOM05D006653 ORTHO05D008346 8.7e-48 194.9 292 37.3
HPP92_000719 Vanilla planifolia HOM05D006653 ORTHO05D008346 1.1e-47 194.5 222 42.3
MD07G1226900 Malus domestica HOM05D006653 ORTHO05D008346 1.9e-47 193.7 237 41.8
Duzib114G1011 Durio zibethinus HOM05D006653 ORTHO05D008346 2.5e-47 193.4 270 39.3
ClCG07G004590 Citrullus lanatus HOM05D006653 ORTHO05D008346 4.3e-47 192.6 220 44.1
Ah.10g036190 Amaranthus hybridus HOM05D006653 ORTHO05D008346 7.3e-47 191.8 254 39.0
Sabra08G0054400 Salix brachista HOM05D006653 ORTHO05D008346 4.8e-46 189.1 323 35.0
Zm00001eb013720 Zea mays HOM05D006653 ORTHO05D008346 4.8e-46 189.1 196 45.4
AagrBONN_evm.TU.Sc2ySwM_362.1315 Anthoceros agrestis HOM05D006653 ORTHO05D008346 1.4e-45 187.6 187 44.9
Rhsim03G0147300 Rhododendron simsii HOM05D006653 ORTHO05D008346 1.4e-45 187.6 346 34.7
AUR62022948 Chenopodium quinoa HOM05D006653 ORTHO05D008346 4.0e-45 186.0 241 39.8
FAN10G0035 Fragaria x ananassa HOM05D006653 ORTHO05D008346 6.9e-45 185.3 234 39.7
Glyma.11G233000 Glycine max HOM05D006653 ORTHO05D008346 1.2e-44 184.5 193 44.0
ECA232G4592 Erigeron canadensis HOM05D006653 ORTHO05D008346 2.6e-44 183.3 294 34.7
ECA233G2660 Erigeron canadensis HOM05D006653 ORTHO05D008346 5.8e-44 182.2 226 40.7
FAN03G1392 Fragaria x ananassa HOM05D006653 ORTHO05D008346 1.4e-42 177.6 241 39.0
AT2G40316 Arabidopsis thaliana HOM05D006653 ORTHO05D008346 1.9e-42 177.2 210 41.9
MELO3C034224.2 Cucumis melo HOM05D006653 ORTHO05D008346 3.2e-42 176.4 210 43.8
Gohir.D10G250100 Gossypium hirsutum HOM05D006653 ORTHO05D008346 7.1e-42 175.3 207 42.0
Gohir.A10G238200 Gossypium hirsutum HOM05D006653 ORTHO05D008346 2.1e-41 173.7 207 41.1
PGSC0003DMG400027171 Solanum tuberosum HOM05D006653 ORTHO05D008346 2.1e-41 173.7 259 34.4
arahy.Tifrunner.gnm1.ann1.WF4WBF Arachis hypogaea HOM05D006653 ORTHO05D008346 4.6e-41 172.6 255 38.8
Psat5g130600 Pisum sativum HOM05D006653 ORTHO05D008346 6.0e-41 172.2 211 42.2
CARHR135400 Cardamine hirsuta HOM05D006653 ORTHO05D008346 1.0e-40 171.4 182 44.0
Dinv21781 Davidia involucrata HOM05D006653 ORTHO05D008346 1.8e-40 170.6 216 40.7
SMO203G0248 Selaginella moellendorffii HOM05D006653 ORTHO05D008346 6.7e-40 168.7 185 47.0
Manes.10G008100 Manihot esculenta HOM05D006653 ORTHO05D008346 3.3e-39 166.4 210 41.4
FvH4_7g25140 Fragaria vesca HOM05D006653 ORTHO05D008346 3.7e-38 162.9 179 43.6
CANSAT56G3810 Cannabis sativa HOM05D006653 ORTHO05D008346 1.0e-35 154.8 186 40.3
Atru.chr12.104 Acer truncatum HOM05D006653 ORTHO05D008346 1.7e-35 154.1 196 38.8
DCAR_011848 Daucus carota HOM05D006653 ORTHO05D008346 4.9e-35 152.5 186 42.5
PGR142G1681 Punica granatum HOM05D006653 ORTHO05D008346 6.0e-33 145.6 173 41.0
CDE06G2038 Ceratophyllum demersum HOM05D006653 ORTHO05D008346 7.9e-33 145.2 192 39.1
VMungo1383G0363 Vigna mungo HOM05D006653 ORTHO05D008346 4.3e-31 139.4 327 30.6
MBI03_g37948_MAGBIO Magnolia biondii HOM05D006653 ORTHO05D008346 6.2e-30 135.6 342 28.9
AUR62012309 Chenopodium quinoa HOM05D000043 ORTHO05D003538 1.1e-26 124.8 235 31.5
Lj8C62G17 Lonicera japonica HOM05D006653 ORTHO05D008346 1.2e-25 121.3 164 37.8
Dinv10585 Davidia involucrata HOM05D006653 ORTHO05D008346 2.7e-25 120.2 129 42.6
COL.COLO4_25792 Corchorus olitorius HOM05D006653 ORTHO05D008346 2.3e-24 117.1 165 40.0
Cpa.g.sc19.127 Carica papaya HOM05D006653 ORTHO05D008346 2.1e-17 94.0 121 41.3
HanXRQChr08g0221951 Helianthus annuus HOM05D006653 ORTHO05D008346 4.3e-15 86.3 156 32.7
SEGI_38425 Sequoiadendron giganteum HOM05D006653 ORTHO05D008346 1.8e-13 80.9 151 31.1
Manes.07G134901 Manihot esculenta HOM05D006653 ORTHO05D008346 1.0e-11 75.1 165 30.3
Manes.07G074522 Manihot esculenta HOM05D006653 ORTHO05D008346 3.0e-08 63.5 98 34.7


User provided reference genes

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