Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.7e-246 854.4 417 100.0
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.0e-155 553.9 354 75.7
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.0e-138 496.5 356 66.3
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.7e-135 486.1 360 65.8
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.4e-113 411.4 316 63.0
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-98 364.4 267 64.0
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 6.9e-91 338.6 325 50.5
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 8.5e-89 331.6 307 52.4
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.6e-87 327.4 313 50.5
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.0e-82 310.5 280 52.5
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.8e-75 287.3 304 47.7
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-71 274.2 293 44.7
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 6.1e-71 272.3 308 43.5
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 1.0e-70 271.6 311 42.8
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 2.3e-70 270.4 305 42.6
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 3.0e-70 270.0 321 42.4
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.7e-70 268.9 344 39.8
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 2.2e-68 263.8 294 43.2
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 3.1e-67 260.0 312 40.1
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 5.3e-67 259.2 301 40.2
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 9.1e-67 258.5 311 41.2
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 1.2e-66 258.1 328 40.5
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.6e-66 257.7 304 42.1
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 2.6e-66 256.9 292 41.8
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 2.6e-66 256.9 312 39.4
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 2.6e-66 256.9 304 40.5
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 3.5e-66 256.5 307 40.1
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 4.5e-66 256.1 312 38.5
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 4.5e-66 256.1 307 40.7
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 5.9e-66 255.8 292 42.1
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.0e-65 255.0 324 39.5
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 1.0e-65 255.0 306 39.2
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 1.7e-65 254.2 313 39.6
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 2.2e-65 253.8 304 40.8
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 2.9e-65 253.4 292 41.4
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 3.8e-65 253.1 301 40.2
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 3.8e-65 253.1 297 41.4
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 5.0e-65 252.7 299 41.1
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 5.0e-65 252.7 307 41.4
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 6.5e-65 252.3 297 41.1
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 1.1e-64 251.5 296 39.5
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.9e-64 250.8 309 40.8
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 1.9e-64 250.8 305 40.3
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 1.9e-64 250.8 296 39.5
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 3.2e-64 250.0 313 39.0
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 3.2e-64 250.0 304 40.8
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 3.2e-64 250.0 313 38.7
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 4.2e-64 249.6 301 40.5
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 4.2e-64 249.6 313 39.3
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 4.2e-64 249.6 307 40.4
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 4.2e-64 249.6 297 40.1
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 7.2e-64 248.8 297 40.1
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 7.2e-64 248.8 314 40.4
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 7.2e-64 248.8 299 40.5
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 9.4e-64 248.4 309 39.5
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 9.4e-64 248.4 289 40.8
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 9.4e-64 248.4 291 42.3
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 9.4e-64 248.4 312 38.8
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.2e-63 248.1 308 40.3
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 1.6e-63 247.7 301 40.2
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.6e-63 247.7 289 40.5
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 1.6e-63 247.7 307 39.4
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 1.6e-63 247.7 297 40.1
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 2.1e-63 247.3 307 38.4
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 2.7e-63 246.9 307 39.7
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 3.6e-63 246.5 289 40.5
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.6e-63 246.5 289 40.5
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 4.7e-63 246.1 293 41.0
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 4.7e-63 246.1 322 39.1
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 4.7e-63 246.1 305 40.0
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 4.7e-63 246.1 289 40.5
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 8.0e-63 245.4 309 39.8
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 8.0e-63 245.4 307 39.7
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 8.0e-63 245.4 289 40.5
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 1.0e-62 245.0 313 37.7
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 1.0e-62 245.0 307 39.4
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.0e-62 245.0 307 39.4
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 1.4e-62 244.6 308 39.9
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.4e-62 244.6 295 39.3
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 1.8e-62 244.2 309 39.8
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.8e-62 244.2 289 40.5
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.8e-62 244.2 298 39.6
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 1.8e-62 244.2 282 40.1
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 1.8e-62 244.2 307 38.8
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 2.3e-62 243.8 305 39.3
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 2.3e-62 243.8 305 39.3
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 2.3e-62 243.8 304 39.1
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 2.3e-62 243.8 297 38.7
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 3.0e-62 243.4 307 40.1
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 3.0e-62 243.4 319 38.6
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 4.0e-62 243.0 309 39.2
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 4.0e-62 243.0 298 39.6
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 4.0e-62 243.0 357 35.9
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 5.2e-62 242.7 289 39.4
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 5.2e-62 242.7 297 41.1
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 6.7e-62 242.3 305 39.0
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 8.8e-62 241.9 305 39.0
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 8.8e-62 241.9 319 38.9
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 8.8e-62 241.9 304 39.1
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.2e-61 241.5 307 38.8
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.2e-61 241.5 379 34.8
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.2e-61 241.5 379 34.8
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 2.6e-61 240.4 308 39.9
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 2.6e-61 240.4 275 41.8
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 2.6e-61 240.4 313 38.7
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 4.4e-61 239.6 313 38.3
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 7.5e-61 238.8 310 38.1
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.3e-60 238.0 306 39.5
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 1.7e-60 237.7 301 39.5
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 1.7e-60 237.7 319 37.6
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.7e-60 237.7 292 40.8
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 2.2e-60 237.3 294 40.5
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 2.2e-60 237.3 305 39.0
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 4.8e-60 236.1 308 38.6
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 6.3e-60 235.7 305 39.0
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 6.3e-60 235.7 305 39.0
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 8.2e-60 235.3 305 38.7
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 8.2e-60 235.3 305 38.7
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 1.1e-59 235.0 305 38.7
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 2.4e-59 233.8 305 38.7
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 3.1e-59 233.4 305 38.7
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 3.1e-59 233.4 294 40.5
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 3.1e-59 233.4 292 38.4
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 5.3e-59 232.6 294 39.8
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 7.0e-59 232.3 298 39.3
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 2.9e-57 226.9 305 37.7
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 3.8e-57 226.5 276 40.9
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 7.2e-56 222.2 313 36.7
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.1e-55 220.7 303 34.7
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 2.7e-55 220.3 282 38.3
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 3.6e-55 219.9 315 40.3
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 2.6e-53 213.8 294 37.8
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 3.7e-52 209.9 295 38.0
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 3.7e-52 209.9 346 34.1
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.5e-50 203.0 148 71.6
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.3e-49 201.4 292 37.7
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.8e-49 199.9 294 39.1
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.5e-48 196.1 293 38.6
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.2e-47 194.9 293 39.2
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.8e-47 193.7 293 39.6
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.0e-47 192.2 154 61.0
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.6e-45 187.2 355 35.2
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.9e-44 183.0 297 35.4
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 3.5e-42 176.8 211 40.8
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.5e-40 170.6 305 33.8
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.6e-39 167.9 304 35.5
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 6.1e-39 166.0 297 36.0
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.1e-35 153.3 293 32.8
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 9.2e-35 152.1 152 48.0
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 2.5e-32 144.1 203 36.0
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 9.5e-32 142.1 236 34.3
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 4.7e-31 139.8 193 36.3
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 1.1e-30 138.7 297 32.7
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 2.3e-30 137.5 198 37.9
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 8.9e-30 135.6 151 37.1
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.4e-29 133.7 103 56.3
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.8e-29 132.9 215 36.7
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 5.8e-29 132.9 205 34.6
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.9e-28 129.8 311 31.2
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.1e-24 118.6 329 30.1
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 1.1e-24 118.6 340 26.2
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 7.3e-24 115.9 146 41.8
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.8e-23 114.0 143 40.6
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 6.8e-22 109.4 151 41.7
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.5e-21 108.2 157 39.5
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 1.5e-21 108.2 352 28.4
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.3e-20 105.1 301 29.9
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 1.7e-20 104.8 136 39.7
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 4.6e-18 96.7 196 31.6
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.5e-16 90.9 111 41.4
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.3e-16 89.4 120 40.0
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 7.3e-16 89.4 76 43.4
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 2.1e-15 87.8 294 26.9
PRCOL_00005847 Prasinoderma coloniale HOM05D047694 ORTHO05D049123 1.3e-09 68.6 272 23.9
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 3.0e-09 67.4 80 41.2
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 9.6e-08 62.4 112 28.6
Pp3c20_3390 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-07 62.0 183 26.8
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 3.6e-07 60.5 94 36.2
MCO08G244 Micromonas commoda HOM05D037687 ORTHO05D049127 4.7e-07 60.1 215 25.6


User provided reference genes

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