Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.0e-125 453.8 292 100.0
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 2.6e-92 342.8 231 99.1
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 3.6e-70 269.2 231 71.4
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 5.1e-56 222.2 228 57.9
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 3.3e-55 219.5 228 64.9
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 1.6e-54 217.2 228 62.7
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 1.6e-54 217.2 228 62.7
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 1.6e-54 217.2 228 66.7
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 2.1e-54 216.9 228 58.8
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 8.1e-54 214.9 228 63.6
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 1.1e-53 214.5 228 62.7
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 1.1e-53 214.5 228 62.7
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 1.8e-53 213.8 228 61.4
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 2.3e-53 213.4 228 64.0
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 5.2e-53 212.2 228 68.4
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 6.8e-53 211.8 230 57.0
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 1.2e-52 211.1 228 62.3
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 1.5e-52 210.7 228 63.6
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 1.5e-52 210.7 228 61.8
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 2.0e-52 210.3 230 56.5
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 2.0e-52 210.3 228 50.9
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 2.0e-52 210.3 228 55.7
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 5.8e-52 208.8 228 62.3
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 7.6e-52 208.4 228 62.3
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.7e-51 207.2 228 62.3
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.7e-51 207.2 228 62.3
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 3.8e-51 206.1 228 65.8
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 6.4e-51 205.3 228 64.0
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 1.4e-50 204.1 228 64.0
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 4.1e-50 202.6 228 56.6
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 7.1e-50 201.8 228 55.7
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 9.2e-50 201.4 228 56.1
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 1.2e-49 201.1 228 55.7
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 2.7e-49 199.9 231 50.2
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 3.5e-49 199.5 228 62.3
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 7.8e-49 198.4 228 56.6
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 1.0e-48 198.0 228 54.4
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 1.7e-48 197.2 228 56.1
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 2.3e-48 196.8 228 65.8
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 3.9e-48 196.1 228 60.5
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 6.6e-48 195.3 228 61.4
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 8.6e-48 194.9 228 61.8
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 8.6e-48 194.9 228 53.5
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 1.1e-47 194.5 228 54.4
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.9e-47 193.7 227 60.4
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 3.3e-47 193.0 228 62.3
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 4.3e-47 192.6 228 67.1
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 5.6e-47 192.2 227 55.9
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 5.6e-47 192.2 231 51.9
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 7.3e-47 191.8 228 59.2
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 9.6e-47 191.4 228 66.7
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.2e-46 191.0 228 62.3
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 2.1e-46 190.3 224 60.3
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 2.8e-46 189.9 233 63.9
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 3.6e-46 189.5 247 57.9
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 4.7e-46 189.1 224 62.9
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 1.1e-45 188.0 228 60.1
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 1.4e-45 187.6 229 61.6
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 1.4e-45 187.6 231 57.6
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 2.4e-45 186.8 247 57.1
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 3.1e-45 186.4 228 61.0
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 4.0e-45 186.0 228 54.4
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 8.9e-45 184.9 228 65.8
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 8.9e-45 184.9 228 53.9
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 1.2e-44 184.5 228 60.1
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 1.5e-44 184.1 228 62.7
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 1.5e-44 184.1 228 58.3
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 1.5e-44 184.1 224 59.8
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 3.4e-44 183.0 224 57.1
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 4.4e-44 182.6 224 54.0
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 7.6e-44 181.8 227 56.8
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 9.9e-44 181.4 228 57.9
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.7e-43 180.6 230 58.7
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 2.9e-43 179.9 228 58.8
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 3.8e-43 179.5 228 55.3
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 3.8e-43 179.5 228 60.5
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 3.8e-43 179.5 229 64.2
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 6.4e-43 178.7 258 58.1
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 8.4e-43 178.3 228 61.8
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 1.1e-42 177.9 228 58.8
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 1.9e-42 177.2 229 57.2
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 2.4e-42 176.8 228 51.8
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 2.4e-42 176.8 224 46.4
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 3.2e-42 176.4 228 61.8
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 5.4e-42 175.6 228 57.0
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 7.1e-42 175.3 228 56.6
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 2.1e-41 173.7 228 53.1
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 3.5e-41 172.9 229 56.3
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 4.6e-41 172.6 231 56.7
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 4.6e-41 172.6 230 57.4
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 1.0e-40 171.4 228 58.3
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 3.9e-40 169.5 228 45.6
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 5.1e-40 169.1 259 46.7
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 1.3e-38 164.5 228 52.2
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 8.1e-38 161.8 228 62.7
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 1.4e-37 161.0 228 55.7
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 1.8e-37 160.6 228 54.4
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.8e-37 160.6 141 61.0
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 3.1e-37 159.8 228 61.4
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 4.0e-37 159.5 230 60.0
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 4.0e-37 159.5 230 60.4
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 9.0e-37 158.3 228 60.5
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 9.0e-37 158.3 228 56.1
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.7e-35 154.1 227 54.6
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 2.9e-35 153.3 228 60.1
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 4.9e-35 152.5 227 55.1
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 4.9e-35 152.5 228 59.6
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 1.9e-34 150.6 228 51.3
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 5.4e-34 149.1 227 54.2
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 9.3e-34 148.3 227 54.6
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 9.3e-34 148.3 227 54.6
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 2.3e-32 143.7 331 41.7
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 9.6e-31 138.3 228 51.3
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 2.8e-30 136.7 98 65.3
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 1.4e-29 134.4 228 55.3
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 1.5e-28 131.0 213 56.8
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 5.6e-23 112.5 56 89.3
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 6.9e-21 105.5 228 42.1
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 2.0e-20 104.0 193 45.1
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 4.5e-20 102.8 228 35.5
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 4.9e-19 99.4 80 62.5
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 2.5e-18 97.1 98 50.0
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 5.5e-18 95.9 228 34.2
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 1.0e-16 91.7 228 35.5
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 3.0e-16 90.1 70 62.9
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 1.5e-15 87.8 231 35.1
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 8.2e-14 82.0 132 39.4
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 6.5e-11 72.4 224 37.1
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 3.7e-06 56.6 78 42.3


User provided reference genes

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