Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_5280 Physcomitrium patens HOM05D005733 ORTHO05D007442 4.3e-107 391.3 198 100.0
Pp3c1_4600 Physcomitrium patens HOM05D005733 ORTHO05D007442 1.3e-52 210.3 199 58.3
Mapoly0019s0038 Marchantia polymorpha HOM05D005733 ORTHO05D007442 3.6e-29 132.5 194 40.2
AagrBONN_evm.TU.Sc2ySwM_344.3527 Anthoceros agrestis HOM05D005733 ORTHO05D007442 5.7e-27 125.2 194 40.2
Lj4g0011389 Lotus japonicus HOM05D005733 ORTHO05D007442 5.3e-25 118.6 189 39.7
Hund08988 Selenicereus undatus HOM05D005733 ORTHO05D007442 1.2e-24 117.5 189 39.2
Migut.J01418 Erythranthe guttata HOM05D005733 ORTHO05D007442 4.5e-24 115.5 189 38.1
Oeu058827.1 Olea europaea HOM05D005733 ORTHO05D007442 1.0e-23 114.4 192 37.5
Phvul.003G151100 Phaseolus vulgaris HOM05D005733 ORTHO05D007442 1.0e-23 114.4 189 38.6
Aqoxy7G03235 Aquilegia oxysepala HOM05D005733 ORTHO05D007442 1.3e-23 114.0 189 37.6
VMungo1215G3105 Vigna mungo HOM05D005733 ORTHO05D007442 1.3e-23 114.0 189 38.6
arahy.Tifrunner.gnm1.ann1.GE8FUD Arachis hypogaea HOM05D005733 ORTHO05D007442 1.7e-23 113.6 191 36.1
Glyma.13G091800 Glycine max HOM05D005733 ORTHO05D007442 1.7e-23 113.6 189 37.6
Glyma.17G068500 Glycine max HOM05D005733 ORTHO05D007442 3.8e-23 112.5 191 37.2
FAN17G0482 Fragaria x ananassa HOM05D005733 ORTHO05D007442 5.0e-23 112.1 191 36.1
arahy.Tifrunner.gnm1.ann1.0JVE27 Arachis hypogaea HOM05D005733 ORTHO05D007442 6.5e-23 111.7 193 35.2
PSO063G5638 Papaver somniferum HOM05D005733 ORTHO05D007442 6.5e-23 111.7 189 35.4
Prupe.1G097300 Prunus persica HOM05D005733 ORTHO05D007442 8.5e-23 111.3 185 34.6
MD16G1262600 Malus domestica HOM05D005733 ORTHO05D007442 1.1e-22 110.9 189 34.9
TAR383G0601 Trochodendron aralioides HOM05D005733 ORTHO05D007442 1.1e-22 110.9 189 38.1
Ca_21184_v3 Cicer arietinum L. HOM05D005733 ORTHO05D007442 1.5e-22 110.5 189 36.5
FvH4_4g23510 Fragaria vesca HOM05D005733 ORTHO05D007442 1.5e-22 110.5 191 36.1
FAN12G3847 Fragaria x ananassa HOM05D005733 ORTHO05D007442 1.9e-22 110.2 191 35.6
SalBow6G0174 Salvia bowleyana HOM05D005733 ORTHO05D007442 1.9e-22 110.2 189 37.6
MSTRG.19675 Avicennia marina HOM05D005733 ORTHO05D007442 2.5e-22 109.8 191 37.2
Cfa013546 Carpinus fangiana HOM05D005733 ORTHO05D007442 3.2e-22 109.4 189 37.0
Duzib187G0641 Durio zibethinus HOM05D005733 ORTHO05D007442 3.2e-22 109.4 189 36.5
PSO782G5004 Papaver somniferum HOM05D005733 ORTHO05D007442 3.2e-22 109.4 189 34.9
RcHm_v2.0_Chr4g0404931 Rosa chinensis HOM05D005733 ORTHO05D007442 3.2e-22 109.4 191 35.1
GSVIVG01023749001 Vitis vinifera HOM05D005733 ORTHO05D007442 3.2e-22 109.4 189 37.0
CSS0014936 Camellia sinensis var. sinensis HOM05D005733 ORTHO05D007442 4.2e-22 109.0 189 36.5
Eucgr.C01245 Eucalyptus grandis HOM05D005733 ORTHO05D007442 4.2e-22 109.0 193 36.3
Actinidia20956 Actinidia chinensis HOM05D005733 ORTHO05D007442 5.5e-22 108.6 189 36.5
EL10Ac8g18867 Beta vulgaris HOM05D005733 ORTHO05D007442 5.5e-22 108.6 189 36.5
PGR142G3644 Punica granatum HOM05D005733 ORTHO05D007442 5.5e-22 108.6 189 37.0
Sabra06G0134700 Salix brachista HOM05D005733 ORTHO05D007442 5.5e-22 108.6 189 34.9
Sc08g0005630 Simmondsia chinensis HOM05D005733 ORTHO05D007442 5.5e-22 108.6 189 34.4
CsaV3_7G001070 Cucumis sativus L. HOM05D005733 ORTHO05D007442 7.2e-22 108.2 190 34.2
MBI14_g08080_MAGBIO Magnolia biondii HOM05D005733 ORTHO05D007442 7.2e-22 108.2 192 34.9
Aa31LG7G2230 Aethionema arabicum HOM05D005733 ORTHO05D007442 9.4e-22 107.8 190 37.4
Aa31sc193G30 Aethionema arabicum HOM05D005733 ORTHO05D007442 9.4e-22 107.8 190 36.8
COL.COLO4_27474 Corchorus olitorius HOM05D005733 ORTHO05D007442 9.4e-22 107.8 189 38.1
Gorai.004G103800 Gossypium raimondii HOM05D005733 ORTHO05D007442 9.4e-22 107.8 189 36.5
MELO3C013348.2 Cucumis melo HOM05D005733 ORTHO05D007442 1.2e-21 107.5 190 34.2
DCAR_014719 Daucus carota HOM05D005733 ORTHO05D007442 1.6e-21 107.1 189 37.0
Thhalv10025984m.g Eutrema salsugineum HOM05D005733 ORTHO05D007442 1.6e-21 107.1 190 37.9
Peaxi162Scf00525g00817 Petunia axillaris HOM05D005733 ORTHO05D007442 2.1e-21 106.7 192 36.5
Thecc.09G161700 Theobroma cacao HOM05D005733 ORTHO05D007442 2.1e-21 106.7 189 34.9
TWI63G0727 Tripterygium wilfordii HOM05D005733 ORTHO05D007442 2.1e-21 106.7 189 35.4
Atru.chr7.506 Acer truncatum HOM05D005733 ORTHO05D007442 3.6e-21 105.9 189 35.4
CANSAT11G0464 Cannabis sativa HOM05D005733 ORTHO05D007442 3.6e-21 105.9 189 35.4
CiPaw.07G186800 Carya illinoinensis HOM05D005733 ORTHO05D007442 3.6e-21 105.9 189 35.4
Hma1.2p1_1531F.1_g289230 Hydrangea macrophylla HOM05D005733 ORTHO05D007442 3.6e-21 105.9 189 36.0
Medtr4g129490 Medicago truncatula HOM05D005733 ORTHO05D007442 3.6e-21 105.9 189 36.0
unitig_0.g187 Utricularia gibba HOM05D005733 ORTHO05D007442 3.6e-21 105.9 176 36.4
vmacro13073 Vaccinium macrocarpon HOM05D005733 ORTHO05D007442 3.6e-21 105.9 189 36.5
A03p57670 Brassica napus HOM05D005733 ORTHO05D007442 4.7e-21 105.5 190 37.4
BraA03t14833Z Brassica rapa HOM05D005733 ORTHO05D007442 4.7e-21 105.5 190 37.4
CARHR235730 Cardamine hirsuta HOM05D005733 ORTHO05D007442 4.7e-21 105.5 190 36.8
Potri.006G176500 Populus trichocarpa HOM05D005733 ORTHO05D007442 4.7e-21 105.5 189 34.4
QL02p095666 Quercus lobata HOM05D005733 ORTHO05D007442 4.7e-21 105.5 189 36.5
BcaC06g32650 Brassica carinata HOM05D005733 ORTHO05D007442 6.1e-21 105.1 190 37.4
Carub.0007s1276 Capsella rubella HOM05D005733 ORTHO05D007442 8.0e-21 104.8 190 35.8
Sp7g25980 Schrenkiella parvula HOM05D005733 ORTHO05D007442 8.0e-21 104.8 190 37.9
HPP92_025686 Vanilla planifolia HOM05D005733 ORTHO05D007442 8.0e-21 104.8 189 33.9
CDE02G3066 Ceratophyllum demersum HOM05D005733 ORTHO05D007442 1.0e-20 104.4 186 34.9
C07p55880 Brassica napus HOM05D005733 ORTHO05D007442 1.8e-20 103.6 190 36.8
Psat4g048120 Pisum sativum HOM05D005733 ORTHO05D007442 1.8e-20 103.6 189 34.4
THA.LOC104811821 Tarenaya hassleriana HOM05D005733 ORTHO05D007442 1.8e-20 103.6 189 36.5
TPR.G5298 Trifolium pratense HOM05D005733 ORTHO05D007442 1.8e-20 103.6 189 35.4
AL7G24580 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 4.0e-20 102.4 190 36.8
AT4G28030 Arabidopsis thaliana HOM05D005733 ORTHO05D007442 4.0e-20 102.4 190 36.8
Rhsim01G0012100 Rhododendron simsii HOM05D005733 ORTHO05D007442 4.0e-20 102.4 189 34.4
Sed0012123 Sechium edule HOM05D005733 ORTHO05D007442 5.2e-20 102.1 189 31.7
Lalb_Chr13g0300531 Lupinus albus HOM05D005733 ORTHO05D007442 6.8e-20 101.7 197 36.5
ATR0580G232 Amborella trichopoda HOM05D005733 ORTHO05D007442 8.8e-20 101.3 189 33.3
SGA_v2.0_scaffold66G22515 Striga asiatica HOM05D005733 ORTHO05D007442 8.8e-20 101.3 189 32.8
Ciclev10010607m.g Citrus clementina HOM05D005733 ORTHO05D007442 1.2e-19 100.9 189 34.4
Nitab4.5_0005985g0010 Nicotiana tabacum HOM05D005733 ORTHO05D007442 1.5e-19 100.5 192 34.4
Manes.06G030000 Manihot esculenta HOM05D005733 ORTHO05D007442 2.0e-19 100.1 218 31.7
ClCG02G004040 Citrullus lanatus HOM05D005733 ORTHO05D007442 2.6e-19 99.8 219 32.0
Lj9A728T23 Lonicera japonica HOM05D005733 ORTHO05D007442 2.6e-19 99.8 189 34.4
Psat4g010480 Pisum sativum HOM05D005733 ORTHO05D007442 2.6e-19 99.8 179 33.5
Cc06_g14000 Coffea canephora HOM05D005733 ORTHO05D007442 1.7e-18 97.1 191 34.0
Solyc07g006340.3 Solanum lycopersicum HOM05D005733 ORTHO05D007442 2.2e-18 96.7 192 34.9
Sopen07g002430 Solanum pennellii HOM05D005733 ORTHO05D007442 2.2e-18 96.7 192 34.9
PGSC0003DMG402011224 Solanum tuberosum HOM05D005733 ORTHO05D007442 1.1e-17 94.4 192 34.4
Zm00001eb412590 Zea mays HOM05D005733 ORTHO05D007442 1.4e-17 94.0 174 37.4
CAN.G1870.3 Capsicum annuum HOM05D005733 ORTHO05D007442 2.4e-17 93.2 192 33.9
HanXRQChr10g0284091 Helianthus annuus HOM05D005733 ORTHO05D007442 3.1e-17 92.8 189 33.9
FAN05G3225 Fragaria x ananassa HOM05D005733 ORTHO05D007442 9.1e-17 91.3 191 33.0
FAN05G4341 Fragaria x ananassa HOM05D005733 ORTHO05D007442 9.1e-17 91.3 191 33.0
Lsat_1_v5_gn_8_64360 Lactuca sativa HOM05D005733 ORTHO05D007442 2.0e-16 90.1 189 33.9
Cpa.g.sc75.16 Carica papaya HOM05D005733 ORTHO05D007442 1.0e-15 87.8 162 35.2
Haze_22166 Corylus avellana HOM05D005733 ORTHO05D007442 2.2e-15 86.7 141 36.9
ECA236G1842 Erigeron canadensis HOM05D005733 ORTHO05D007442 1.2e-13 80.9 175 33.7
Cre02.g084550 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D007442 2.7e-13 79.7 229 31.9
AagrBONN_evm.TU.Sc2ySwM_117.2238 Anthoceros agrestis HOM05D004023 ORTHO05D004681 4.7e-13 79.0 188 28.7
Nn4g23704 Nelumbo nucifera HOM05D005733 ORTHO05D007442 3.0e-12 76.3 80 46.2
Gohir.A08G096462 Gossypium hirsutum HOM05D005733 ORTHO05D007442 4.0e-12 75.9 150 32.7
SEGI_16930 Sequoiadendron giganteum HOM05D005733 ORTHO05D007442 4.0e-12 75.9 80 43.8
MCO03G095 Micromonas commoda HOM05D005733 ORTHO05D007442 8.8e-12 74.7 85 45.9
Gohir.D08G097100 Gossypium hirsutum HOM05D005733 ORTHO05D007442 5.7e-11 72.0 96 40.6
Psat4g048000 Pisum sativum HOM05D005733 ORTHO05D007442 5.7e-11 72.0 64 50.0
Ah.14g084100 Amaranthus hybridus HOM05D005733 ORTHO05D007442 7.5e-11 71.6 168 32.1
AUR62039751 Chenopodium quinoa HOM05D005733 ORTHO05D007442 1.7e-10 70.5 147 34.0
Pp3c12_9920 Physcomitrium patens HOM05D004023 ORTHO05D004681 2.8e-10 69.7 57 52.6
C01p24460 Brassica napus HOM05D005733 ORTHO05D007442 3.7e-10 69.3 84 45.2
AUR62028411 Chenopodium quinoa HOM05D005733 ORTHO05D007442 4.9e-10 68.9 147 33.3
Mapoly0023s0080 Marchantia polymorpha HOM05D004023 ORTHO05D004681 1.4e-09 67.4 180 28.9
PRCOL_00005269 Prasinoderma coloniale HOM05D005733 ORTHO05D007442 1.8e-09 67.0 70 44.3
Cc00_g30300 Coffea canephora HOM05D005733 ORTHO05D007442 7.0e-09 65.1 145 30.3
CDE05G3532 Ceratophyllum demersum HOM05D001854 ORTHO05D001800 1.2e-08 64.3 142 29.6
Cre13.g581150 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D006928 2.7e-08 63.2 89 38.2
AL3G40460 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 4.5e-08 62.4 120 34.2
AL6G37990 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 4.5e-08 62.4 120 34.2
AL7G30680 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 4.5e-08 62.4 120 34.2
AL1G31260 Arabidopsis lyrata HOM05D005733 ORTHO05D007442 5.9e-08 62.0 120 34.2
Cre07.g331475 Chlamydomonas reinhardtii HOM05D005733 ORTHO05D145912 5.9e-08 62.0 83 38.6
Cre06.g269100 Chlamydomonas reinhardtii HOM05D006270 ORTHO05D007755 7.7e-08 61.6 89 37.1
arahy.Tifrunner.gnm1.ann1.XHC94G Arachis hypogaea HOM05D004023 ORTHO05D004681 1.0e-07 61.2 113 35.4
HanXRQChr14g0431991 Helianthus annuus HOM05D004023 ORTHO05D004681 1.0e-07 61.2 185 28.6
Cfa002993 Carpinus fangiana HOM05D004023 ORTHO05D004681 1.3e-07 60.8 152 32.2
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 1.3e-07 60.8 81 40.7
Lalb_Chr08g0232581 Lupinus albus HOM05D004023 ORTHO05D004681 1.3e-07 60.8 114 37.7
Haze_26009 Corylus avellana HOM05D004023 ORTHO05D004681 2.9e-07 59.7 133 32.3
Ah.03g147260 Amaranthus hybridus HOM05D004023 ORTHO05D004681 3.8e-07 59.3 195 27.7
MBI13_g42818_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 3.8e-07 59.3 111 33.3
Mapoly0033s0159 Marchantia polymorpha HOM05D002510 ORTHO05D006928 3.8e-07 59.3 59 45.8
Peaxi162Scf00554g00920 Petunia axillaris HOM05D004023 ORTHO05D004681 3.8e-07 59.3 80 40.0
arahy.Tifrunner.gnm1.ann1.KDYD97 Arachis hypogaea HOM05D004023 ORTHO05D004681 6.6e-07 58.5 113 35.4
CDE04G1444 Ceratophyllum demersum HOM05D002510 ORTHO05D006928 6.6e-07 58.5 67 43.3
SEGI_14760 Sequoiadendron giganteum HOM05D004023 ORTHO05D004681 6.6e-07 58.5 192 26.6
Lsat_1_v5_gn_2_38101 Lactuca sativa HOM05D004023 ORTHO05D004681 8.6e-07 58.2 142 33.1
MCO16G519 Micromonas commoda HOM05D006270 ORTHO05D007755 8.6e-07 58.2 89 32.6
Eucgr.J00649 Eucalyptus grandis HOM05D004023 ORTHO05D004681 1.1e-06 57.8 78 39.7
MBI13_g41748_MAGBIO Magnolia biondii HOM05D004023 ORTHO05D004681 1.1e-06 57.8 174 28.7
Actinidia29930 Actinidia chinensis HOM05D004023 ORTHO05D004681 1.5e-06 57.4 118 33.1
A07p06280 Brassica napus HOM05D004023 ORTHO05D004681 1.5e-06 57.4 174 28.7
BraA07t28423Z Brassica rapa HOM05D004023 ORTHO05D004681 1.5e-06 57.4 174 28.7
PSO063G7611 Papaver somniferum HOM05D002510 ORTHO05D006928 1.9e-06 57.0 59 45.8
CARHR103710 Cardamine hirsuta HOM05D004023 ORTHO05D004681 2.5e-06 56.6 174 28.7
Duzib168G1033 Durio zibethinus HOM05D004023 ORTHO05D004681 2.5e-06 56.6 80 38.8
THA.LOC104826588 Tarenaya hassleriana HOM05D004023 ORTHO05D004681 2.5e-06 56.6 118 33.9
ATR1096G005 Amborella trichopoda HOM05D004023 ORTHO05D004681 4.3e-06 55.8 77 40.3
ECA240G3187 Erigeron canadensis HOM05D004023 ORTHO05D004681 4.3e-06 55.8 91 38.5
Sed0007208 Sechium edule HOM05D004023 ORTHO05D004681 4.3e-06 55.8 107 33.6
BcaC06g35952 Brassica carinata HOM05D004023 ORTHO05D004681 5.6e-06 55.5 174 28.2
Sp3g24610 Schrenkiella parvula HOM05D004023 ORTHO05D004681 5.6e-06 55.5 90 36.7
Aa31sc133G50 Aethionema arabicum HOM05D004023 ORTHO05D004681 7.3e-06 55.1 169 27.2
ATR0598G151 Amborella trichopoda HOM05D004023 ORTHO05D004681 7.3e-06 55.1 63 39.7
Potri.010G222900 Populus trichocarpa HOM05D002510 ORTHO05D006928 7.3e-06 55.1 59 44.1
Sabra10G0172300 Salix brachista HOM05D002510 ORTHO05D006928 7.3e-06 55.1 59 44.1
arahy.Tifrunner.gnm1.ann1.KW18SN Arachis hypogaea HOM05D004023 ORTHO05D004681 9.5e-06 54.7 118 34.7
CANSAT56G0673 Cannabis sativa HOM05D004023 ORTHO05D004681 9.5e-06 54.7 80 38.8
Cc01_g06740 Coffea canephora HOM05D004023 ORTHO05D004681 9.5e-06 54.7 140 32.1
Migut.L01563 Erythranthe guttata HOM05D004023 ORTHO05D004681 9.5e-06 54.7 77 37.7
Gohir.A06G076200 Gossypium hirsutum HOM05D004023 ORTHO05D004681 9.5e-06 54.7 80 38.8
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 9.5e-06 54.7 89 31.5
Nitab4.5_0005551g0010 Nicotiana tabacum HOM05D005733 ORTHO05D007442 9.5e-06 54.7 131 29.0
PSO339G5277 Papaver somniferum HOM05D002510 ORTHO05D006928 9.5e-06 54.7 59 44.1


User provided reference genes

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