Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 4.2e-124 448.0 218 100.0
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 2.5e-76 289.3 224 65.2
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 1.1e-71 273.9 221 59.7
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 1.4e-71 273.5 221 62.0
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 1.9e-71 273.1 227 60.8
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 2.4e-71 272.7 221 61.1
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 4.2e-71 271.9 227 60.4
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 5.4e-71 271.6 227 60.4
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 5.4e-71 271.6 222 59.5
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 7.1e-71 271.2 220 59.1
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 7.1e-71 271.2 221 61.1
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 1.6e-70 270.0 221 60.2
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 2.1e-70 269.6 221 59.3
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 2.1e-70 269.6 221 59.3
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 4.6e-70 268.5 221 59.7
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 4.6e-70 268.5 226 58.8
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 1.0e-69 267.3 221 58.8
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 2.3e-69 266.2 221 59.7
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 2.3e-69 266.2 223 61.0
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.3e-69 266.2 221 58.4
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 2.3e-69 266.2 221 59.7
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 3.0e-69 265.8 221 58.4
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 3.0e-69 265.8 222 59.9
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 5.1e-69 265.0 221 57.0
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 5.1e-69 265.0 221 59.7
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 6.6e-69 264.6 221 58.8
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 6.6e-69 264.6 226 59.3
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 6.6e-69 264.6 221 59.7
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 1.9e-68 263.1 226 58.4
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 7.3e-68 261.2 221 59.7
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 9.6e-68 260.8 226 59.7
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 3.6e-67 258.8 221 59.3
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 4.8e-67 258.5 222 57.2
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 6.2e-67 258.1 221 58.4
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 1.4e-66 256.9 221 59.3
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.8e-66 256.5 223 58.7
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 4.0e-66 255.4 222 57.2
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 4.0e-66 255.4 222 58.6
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.0e-66 255.4 222 58.6
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 5.3e-66 255.0 221 58.4
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.3e-66 255.0 222 58.1
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 9.0e-66 254.2 220 56.4
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 9.0e-66 254.2 226 56.2
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 9.0e-66 254.2 223 59.2
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 1.5e-65 253.4 226 58.0
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 1.5e-65 253.4 222 59.0
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.0e-65 253.1 222 58.1
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 3.4e-65 252.3 226 57.5
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 3.4e-65 252.3 222 57.2
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 5.8e-65 251.5 221 57.0
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 5.8e-65 251.5 221 56.6
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 9.9e-65 250.8 222 57.2
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.7e-64 250.0 220 57.7
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 1.7e-64 250.0 222 56.8
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 2.2e-64 249.6 227 55.5
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 2.9e-64 249.2 221 55.2
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 3.8e-64 248.8 221 56.6
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 3.8e-64 248.8 223 55.6
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 3.8e-64 248.8 223 55.6
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 4.9e-64 248.4 221 56.1
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 4.9e-64 248.4 221 55.2
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 1.1e-63 247.3 226 58.4
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 1.4e-63 246.9 222 55.0
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 1.9e-63 246.5 221 55.2
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 1.9e-63 246.5 221 54.3
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 1.9e-63 246.5 221 54.3
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 2.4e-63 246.1 239 53.1
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 2.4e-63 246.1 226 54.9
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 3.2e-63 245.7 224 57.1
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 4.2e-63 245.4 221 56.1
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 4.2e-63 245.4 221 54.8
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 9.3e-63 244.2 226 56.6
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 1.6e-62 243.4 197 57.9
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 2.1e-62 243.0 221 54.3
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 4.6e-62 241.9 221 53.4
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 1.3e-61 240.4 221 52.9
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 1.8e-61 240.0 221 55.2
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.8e-61 240.0 226 54.4
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 2.3e-61 239.6 226 54.0
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 3.0e-61 239.2 195 58.5
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 3.9e-61 238.8 201 58.2
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 5.1e-61 238.4 195 57.4
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 6.7e-61 238.0 203 56.7
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 8.7e-61 237.7 222 58.6
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 8.7e-61 237.7 195 60.5
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.1e-60 237.3 195 57.9
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.5e-60 236.9 226 54.4
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 1.5e-60 236.9 226 54.4
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 4.3e-60 235.3 197 59.9
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 5.6e-60 235.0 212 56.6
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 7.4e-60 234.6 229 53.7
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 7.4e-60 234.6 229 54.1
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 9.6e-60 234.2 223 53.4
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.3e-59 233.8 195 56.4
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 1.6e-59 233.4 228 52.6
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 1.6e-59 233.4 228 52.6
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.6e-59 233.4 198 55.6
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 2.8e-59 232.6 221 53.8
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 2.8e-59 232.6 221 53.8
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 3.6e-59 232.3 227 53.7
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 8.1e-59 231.1 197 56.3
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 1.8e-58 229.9 216 51.9
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 2.4e-58 229.6 195 57.9
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 6.9e-58 228.0 213 52.6
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 1.2e-57 227.3 222 51.4
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 1.2e-57 227.3 239 50.2
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 2.6e-57 226.1 222 50.5
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 4.5e-57 225.3 185 59.5
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 5.8e-57 224.9 200 56.0
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 7.6e-57 224.6 201 56.2
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 2.2e-56 223.0 200 55.0
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 6.4e-56 221.5 200 55.5
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 9.3e-55 217.6 204 52.9
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 9.3e-55 217.6 221 48.9
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 2.1e-54 216.5 194 54.6
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.9e-52 209.9 214 49.1
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 2.8e-51 206.1 301 41.5
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 2.8e-51 206.1 222 47.3
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 1.8e-50 203.4 224 48.7
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 1.8e-50 203.4 224 48.7
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 2.4e-50 203.0 216 48.6
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 3.4e-49 199.1 219 48.9
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 3.4e-49 199.1 195 50.3
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 5.8e-49 198.4 220 50.0
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 7.1e-47 191.4 222 47.7
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 2.1e-46 189.9 290 40.0
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 8.7e-45 184.5 194 49.5
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 1.1e-44 184.1 178 53.9
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 4.3e-44 182.2 176 52.8
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 4.5e-41 172.2 159 52.8
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 8.5e-40 167.9 223 41.7
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 1.9e-39 166.8 166 52.4
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 4.6e-38 162.2 184 46.7
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 3.0e-37 159.5 99 68.7
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.9e-36 156.8 171 48.5
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 9.7e-36 154.5 198 46.5
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 8.2e-35 151.4 93 72.0
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 1.4e-34 150.6 260 36.2
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 2.6e-33 146.4 220 40.5
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 3.9e-29 132.5 162 42.0
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 1.1e-26 124.4 139 49.6
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.8e-26 123.6 84 69.0
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 7.7e-25 118.2 84 61.9
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 5.0e-16 89.0 107 43.0
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.1e-15 87.8 143 38.5
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 3.2e-07 59.7 58 50.0
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 7.2e-07 58.5 209 23.4
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 9.4e-07 58.2 82 39.0


User provided reference genes

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