Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_3000 Physcomitrium patens HOM05D003898 ORTHO05D004642 3.4e-178 628.2 320 100.0
Mapoly0004s0284 Marchantia polymorpha HOM05D003898 ORTHO05D004642 7.4e-109 397.9 312 64.1
SEGI_30417 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 6.0e-103 378.3 304 61.5
PGSC0003DMG401016958 Solanum tuberosum HOM05D003898 ORTHO05D004642 3.9e-102 375.6 304 60.9
Solyc12g056840.2 Solanum lycopersicum HOM05D003898 ORTHO05D004642 6.7e-102 374.8 304 61.2
MSTRG.24959 Avicennia marina HOM05D003898 ORTHO05D004642 8.7e-102 374.4 309 59.5
CSS0037064 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 8.7e-102 374.4 302 60.9
Sopen12g029520 Solanum pennellii HOM05D003898 ORTHO05D004642 1.1e-101 374.0 304 60.9
Nitab4.5_0000425g0260 Nicotiana tabacum HOM05D003898 ORTHO05D004642 9.6e-101 370.9 303 60.4
Peaxi162Scf00160g01643 Petunia axillaris HOM05D003898 ORTHO05D004642 8.2e-100 367.9 307 59.9
Thecc.08G115200 Theobroma cacao HOM05D003898 ORTHO05D004642 1.1e-99 367.5 303 59.1
vmacro04776 Vaccinium macrocarpon HOM05D003898 ORTHO05D004642 1.4e-99 367.1 309 58.9
TAR625G0437 Trochodendron aralioides HOM05D003898 ORTHO05D004642 9.0e-99 364.4 310 57.7
HanXRQChr05g0162311 Helianthus annuus HOM05D003898 ORTHO05D004642 1.2e-98 364.0 309 57.0
ECA246G0783 Erigeron canadensis HOM05D003898 ORTHO05D004642 5.9e-98 361.7 301 57.8
SGA_v2.0_scaffold11G05890 Striga asiatica HOM05D003898 ORTHO05D004642 5.9e-98 361.7 304 58.2
CAN.G47.19 Capsicum annuum HOM05D003898 ORTHO05D004642 7.6e-98 361.3 330 56.1
CSS0048138 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.0e-97 360.9 303 58.4
Duzib093G1469 Durio zibethinus HOM05D003898 ORTHO05D004642 1.0e-97 360.9 303 59.1
FvH4_5g38420 Fragaria vesca HOM05D003898 ORTHO05D004642 1.0e-97 360.9 311 57.6
Rhsim07G0198900 Rhododendron simsii HOM05D003898 ORTHO05D004642 1.3e-97 360.5 312 58.7
Potri.002G090500 Populus trichocarpa HOM05D003898 ORTHO05D004642 2.2e-97 359.8 303 57.4
QL12p035494 Quercus lobata HOM05D003898 ORTHO05D004642 2.9e-97 359.4 303 57.8
Sc16g0001430 Simmondsia chinensis HOM05D003898 ORTHO05D004642 6.5e-97 358.2 316 56.0
GSVIVG01008958001 Vitis vinifera HOM05D003898 ORTHO05D004642 6.5e-97 358.2 304 58.6
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 1.1e-96 357.5 304 58.2
HanXRQChr01g0001161 Helianthus annuus HOM05D003898 ORTHO05D004642 1.1e-96 357.5 309 56.0
CANSAT25G0948 Cannabis sativa HOM05D003898 ORTHO05D004642 1.9e-96 356.7 309 57.6
CiPaw.06G023700 Carya illinoinensis HOM05D003898 ORTHO05D004642 1.9e-96 356.7 304 58.9
Manes.02G157700 Manihot esculenta HOM05D003898 ORTHO05D004642 1.9e-96 356.7 303 56.8
Dinv13069 Davidia involucrata HOM05D003898 ORTHO05D004642 2.5e-96 356.3 307 58.0
PSO447G0107 Papaver somniferum HOM05D003898 ORTHO05D004642 2.5e-96 356.3 307 56.0
TPR.G26798 Trifolium pratense HOM05D003898 ORTHO05D004642 2.5e-96 356.3 306 57.2
Potri.005G170600 Populus trichocarpa HOM05D003898 ORTHO05D004642 5.5e-96 355.1 302 56.3
EL10Ac6g15432 Beta vulgaris HOM05D003898 ORTHO05D004642 7.2e-96 354.8 301 58.5
DCAR_028260 Daucus carota HOM05D003898 ORTHO05D004642 7.2e-96 354.8 304 58.2
RcHm_v2.0_Chr7g0240421 Rosa chinensis HOM05D003898 ORTHO05D004642 7.2e-96 354.8 303 57.1
Migut.C00215 Erythranthe guttata HOM05D003898 ORTHO05D004642 9.3e-96 354.4 301 59.1
PSO210G6710 Papaver somniferum HOM05D003898 ORTHO05D004642 9.3e-96 354.4 307 56.4
Gohir.D01G182400 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.2e-95 354.0 303 59.4
Gorai.002G220000 Gossypium raimondii HOM05D003898 ORTHO05D004642 1.2e-95 354.0 303 59.4
MD08G1174000 Malus domestica HOM05D003898 ORTHO05D004642 1.2e-95 354.0 310 56.1
Psat5g107440 Pisum sativum HOM05D003898 ORTHO05D004642 1.2e-95 354.0 301 55.8
Gohir.A01G187300 Gossypium hirsutum HOM05D003898 ORTHO05D004642 1.6e-95 353.6 312 57.4
COL.COLO4_16517 Corchorus olitorius HOM05D003898 ORTHO05D004642 2.1e-95 353.2 313 55.3
Ca_02530_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 3.6e-95 352.4 303 55.8
CiPaw.05G230800 Carya illinoinensis HOM05D003898 ORTHO05D004642 3.0e-94 349.4 303 56.1
Prupe.1G507900 Prunus persica HOM05D003898 ORTHO05D004642 3.9e-94 349.0 303 57.1
Aqoxy2G00480 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 6.7e-94 348.2 302 56.0
Medtr4g112080 Medicago truncatula HOM05D003898 ORTHO05D004642 6.7e-94 348.2 303 56.8
Ciclev10005436m.g Citrus clementina HOM05D003898 ORTHO05D004642 8.7e-94 347.8 312 56.1
Lsat_1_v5_gn_9_70200 Lactuca sativa HOM05D003898 ORTHO05D004642 8.7e-94 347.8 312 54.8
AUR62019012 Chenopodium quinoa HOM05D003898 ORTHO05D004642 1.1e-93 347.4 303 58.4
AUR62027853 Chenopodium quinoa HOM05D003898 ORTHO05D004642 2.5e-93 346.3 308 58.1
VMungo1309G1855 Vigna mungo HOM05D003898 ORTHO05D004642 3.3e-93 345.9 306 54.9
Glyma.06G107500 Glycine max HOM05D003898 ORTHO05D004642 5.7e-93 345.1 306 55.2
Os08g0176100 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 5.7e-93 345.1 301 56.1
Sabra02G0071500 Salix brachista HOM05D003898 ORTHO05D004642 1.3e-92 344.0 321 53.3
Cpa.g.sc49.114 Carica papaya HOM05D003898 ORTHO05D004642 1.6e-92 343.6 308 53.9
Lalb_Chr08g0241771 Lupinus albus HOM05D003898 ORTHO05D004642 2.8e-92 342.8 304 55.9
THA.LOC104813137 Tarenaya hassleriana HOM05D003898 ORTHO05D004642 2.8e-92 342.8 304 56.6
PGR044G1262 Punica granatum HOM05D003898 ORTHO05D004642 3.7e-92 342.4 310 55.5
Phvul.009G026700 Phaseolus vulgaris HOM05D003898 ORTHO05D004642 4.8e-92 342.0 306 54.9
Lj1g0002951 Lotus japonicus HOM05D003898 ORTHO05D004642 6.3e-92 341.7 305 56.1
TWI12G0005 Tripterygium wilfordii HOM05D003898 ORTHO05D004642 1.4e-91 340.5 302 56.0
ClCG08G010840 Citrullus lanatus HOM05D003898 ORTHO05D004642 3.1e-91 339.3 317 54.6
Lalb_Chr11g0065591 Lupinus albus HOM05D003898 ORTHO05D004642 3.1e-91 339.3 308 55.2
CDE10G0849 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 4.1e-91 339.0 301 54.2
FvH4_7g08221 Fragaria vesca HOM05D003898 ORTHO05D004642 4.1e-91 339.0 302 56.3
RcHm_v2.0_Chr1g0340891 Rosa chinensis HOM05D003898 ORTHO05D004642 4.1e-91 339.0 310 54.5
CAN.G617.2 Capsicum annuum HOM05D003898 ORTHO05D004642 6.9e-91 338.2 326 54.3
Glyma.04G254600 Glycine max HOM05D003898 ORTHO05D004642 6.9e-91 338.2 307 55.0
Nitab4.5_0006745g0040 Nicotiana tabacum HOM05D003898 ORTHO05D004642 6.9e-91 338.2 378 48.9
Medtr3g073550 Medicago truncatula HOM05D003898 ORTHO05D004642 9.1e-91 337.8 307 55.0
TPR.G32957 Trifolium pratense HOM05D003898 ORTHO05D004642 1.5e-90 337.0 307 54.1
MELO3C011378.2 Cucumis melo HOM05D003898 ORTHO05D004642 2.0e-90 336.7 312 54.2
Sed0026073 Sechium edule HOM05D003898 ORTHO05D004642 2.0e-90 336.7 320 53.1
Sopen04g028670 Solanum pennellii HOM05D003898 ORTHO05D004642 2.6e-90 336.3 321 53.9
Carub.0001s1201 Capsella rubella HOM05D003898 ORTHO05D004642 4.5e-90 335.5 302 54.6
CARHR012640 Cardamine hirsuta HOM05D003898 ORTHO05D004642 1.3e-89 334.0 302 54.6
Lsat_1_v5_gn_6_68860 Lactuca sativa HOM05D003898 ORTHO05D004642 1.7e-89 333.6 272 59.6
Lj4C109T16 Lonicera japonica HOM05D003898 ORTHO05D004642 1.7e-89 333.6 338 53.8
Cfa015947 Carpinus fangiana HOM05D003898 ORTHO05D004642 2.2e-89 333.2 279 57.7
Sp6g40350 Schrenkiella parvula HOM05D003898 ORTHO05D004642 2.2e-89 333.2 302 55.3
Cc10_g06070 Coffea canephora HOM05D003898 ORTHO05D004642 2.9e-89 332.8 272 58.8
CsaV3_6G035700 Cucumis sativus L. HOM05D003898 ORTHO05D004642 3.8e-89 332.4 312 53.5
Haze_00543 Corylus avellana HOM05D003898 ORTHO05D004642 8.5e-89 331.3 329 52.6
FAN13G1941 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.4e-88 330.5 338 52.1
Zm00001eb414730 Zea mays HOM05D003898 ORTHO05D004642 1.4e-88 330.5 302 55.3
FAN08G2468 Fragaria x ananassa HOM05D003898 ORTHO05D004642 5.5e-88 328.6 332 52.7
Os02g0575200 Oryza sativa ssp. japonica HOM05D003898 ORTHO05D004642 5.5e-88 328.6 303 54.1
Aa31LG9G14440 Aethionema arabicum HOM05D003898 ORTHO05D004642 7.2e-88 328.2 291 55.3
CANSAT01G0632 Cannabis sativa HOM05D003898 ORTHO05D004642 7.2e-88 328.2 307 56.0
Thhalv10014147m.g Eutrema salsugineum HOM05D003898 ORTHO05D004642 7.2e-88 328.2 302 54.3
A10p33510 Brassica napus HOM05D003898 ORTHO05D004642 9.4e-88 327.8 308 52.6
Oeu038191.1 Olea europaea HOM05D003898 ORTHO05D004642 1.6e-87 327.0 290 56.9
BcaNung04450 Brassica carinata HOM05D003898 ORTHO05D004642 3.6e-87 325.9 312 52.9
arahy.Tifrunner.gnm1.ann1.HG05DD Arachis hypogaea HOM05D003898 ORTHO05D004642 1.0e-86 324.3 266 59.8
BraA02t04709Z Brassica rapa HOM05D003898 ORTHO05D004642 1.0e-86 324.3 309 53.7
C09p74420 Brassica napus HOM05D003898 ORTHO05D004642 1.8e-86 323.6 312 52.6
AT1G12350 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 2.3e-86 323.2 302 53.6
BolC9t60175H Brassica oleracea HOM05D003898 ORTHO05D004642 6.7e-86 321.6 312 52.6
TAR381G1034 Trochodendron aralioides HOM05D003898 ORTHO05D004642 1.1e-85 320.9 274 58.4
Zm00001eb182920 Zea mays HOM05D003898 ORTHO05D004642 2.6e-85 319.7 307 52.4
HPP92_006004 Vanilla planifolia HOM05D003898 ORTHO05D004642 4.4e-85 318.9 308 53.2
C02p00370 Brassica napus HOM05D003898 ORTHO05D004642 5.7e-85 318.5 302 53.0
Solyc04g072480.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 5.7e-85 318.5 352 50.6
arahy.Tifrunner.gnm1.ann1.PF76WK Arachis hypogaea HOM05D003898 ORTHO05D004642 7.4e-85 318.2 266 58.6
BcaNung06026 Brassica carinata HOM05D003898 ORTHO05D004642 7.4e-85 318.2 302 53.0
AL1G23670 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 1.3e-84 317.4 260 59.6
BraA10t45381Z Brassica rapa HOM05D003898 ORTHO05D004642 1.8e-83 313.5 334 49.1
arahy.Tifrunner.gnm1.ann1.Z23D3B Arachis hypogaea HOM05D003898 ORTHO05D004642 5.3e-83 312.0 275 56.7
Nitab4.5_0001307g0170 Nicotiana tabacum HOM05D003898 ORTHO05D004642 2.6e-82 309.7 305 53.8
arahy.Tifrunner.gnm1.ann1.K1QIEY Arachis hypogaea HOM05D003898 ORTHO05D004642 1.7e-81 307.0 348 48.0
FvH4_5g38402 Fragaria vesca HOM05D003898 ORTHO05D004642 1.6e-79 300.4 242 59.5
SMO137G0130 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 4.7e-79 298.9 302 54.6
SalBow7G2097 Salvia bowleyana HOM05D003898 ORTHO05D004642 1.0e-78 297.7 306 51.0
RcHm_v2.0_Chr1g0340911 Rosa chinensis HOM05D003898 ORTHO05D004642 1.8e-78 297.0 253 58.9
FAN01G1002 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.5e-77 293.9 311 52.1
Nn1g05207 Nelumbo nucifera HOM05D003898 ORTHO05D004642 2.8e-76 289.7 229 59.0
Solyc10g011840.3 Solanum lycopersicum HOM05D003898 ORTHO05D004642 2.0e-74 283.5 308 50.3
CSS0031031 Camellia sinensis var. sinensis HOM05D003898 ORTHO05D004642 1.1e-72 277.7 255 54.1
Duzib116G0208 Durio zibethinus HOM05D003898 ORTHO05D004642 4.5e-66 255.8 303 47.5
SMO137G0020 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 1.7e-65 253.8 263 54.8
ATR0564G227 Amborella trichopoda HOM05D003898 ORTHO05D004642 2.9e-65 253.1 227 54.2
MD15G1360400 Malus domestica HOM05D003898 ORTHO05D004642 3.2e-64 249.6 226 54.4
PRCOL_00003493 Prasinoderma coloniale HOM05D003898 ORTHO05D004642 3.4e-61 239.6 352 41.5
FAN06G3434 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.8e-60 236.5 215 55.3
AagrBONN_evm.TU.Sc2ySwM_344.1574 Anthoceros agrestis HOM05D003898 ORTHO05D004642 4.8e-60 235.7 192 62.0
AL6G11300 Arabidopsis lyrata HOM05D003898 ORTHO05D004642 2.0e-58 230.3 185 59.5
SalBow1G7967 Salvia bowleyana HOM05D003898 ORTHO05D004642 2.3e-57 226.9 213 52.6
Cre01.g048050 Chlamydomonas reinhardtii HOM05D003898 ORTHO05D004642 1.6e-55 220.7 307 44.0
ClCG08G002640 Citrullus lanatus HOM05D003898 ORTHO05D004642 2.3e-54 216.9 449 34.7
SMO137G0337 Selaginella moellendorffii HOM05D003898 ORTHO05D004642 2.0e-53 213.8 229 52.4
CDE10G0276 Ceratophyllum demersum HOM05D003898 ORTHO05D004642 1.7e-49 200.7 156 58.3
Atru.chr13.1300 Acer truncatum HOM05D003898 ORTHO05D004642 8.6e-49 198.4 169 58.6
PGSC0003DMG400027542 Solanum tuberosum HOM05D003898 ORTHO05D004642 1.9e-48 197.2 183 55.2
MCO09G707 Micromonas commoda HOM05D003898 ORTHO05D004642 2.5e-48 196.8 280 42.5
FAN04G1035 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.6e-47 194.1 212 48.1
Dinv44720 Davidia involucrata HOM05D003898 ORTHO05D004642 4.7e-47 192.6 160 58.8
AT5G02080 Arabidopsis thaliana HOM05D003898 ORTHO05D004642 8.0e-47 191.8 184 53.3
Psat4g046560 Pisum sativum HOM05D003898 ORTHO05D011365 3.4e-45 186.4 167 55.7
BolC2t06037H Brassica oleracea HOM05D003898 ORTHO05D004642 1.7e-44 184.1 175 53.1
SEGI_10597 Sequoiadendron giganteum HOM05D003898 ORTHO05D004642 2.9e-44 183.3 147 61.2
Nitab4.5_0000553g0060 Nicotiana tabacum HOM05D003898 ORTHO05D004642 3.7e-44 183.0 248 44.4
Sopen10g005660 Solanum pennellii HOM05D003898 ORTHO05D004642 4.6e-42 176.0 218 45.9
DCAR_027594 Daucus carota HOM05D003898 ORTHO05D004642 3.9e-41 172.9 212 44.8
Eucgr.F04382 Eucalyptus grandis HOM05D003898 ORTHO05D004642 9.5e-40 168.3 146 61.0
Cfa024377 Carpinus fangiana HOM05D003898 ORTHO05D004642 3.6e-39 166.4 301 39.5
Lj4C710T9 Lonicera japonica HOM05D003898 ORTHO05D004642 1.8e-38 164.1 140 59.3
unitig_32.g11143 Utricularia gibba HOM05D003898 ORTHO05D004642 3.7e-36 156.4 132 59.1
CBR_g9000 Chara braunii HOM05D003898 ORTHO05D004642 1.1e-35 154.8 170 48.8
Ca_25770_v3 Cicer arietinum L. HOM05D003898 ORTHO05D004642 1.9e-35 154.1 165 52.7
Atru.chr13.1301 Acer truncatum HOM05D003898 ORTHO05D004642 7.0e-35 152.1 134 53.0
FAN18G1940 Fragaria x ananassa HOM05D003898 ORTHO05D004642 1.1e-32 144.8 194 42.8
Atru.chr1.2069 Acer truncatum HOM05D003898 ORTHO05D004642 2.5e-32 143.7 116 57.8
Atru.chr4.493 Acer truncatum HOM05D003898 ORTHO05D004642 2.5e-32 143.7 116 57.8
CBR_g9001 Chara braunii HOM05D003898 ORTHO05D004642 2.9e-28 130.2 116 58.6
arahy.Tifrunner.gnm1.ann1.Z5SK82 Arachis hypogaea HOM05D003898 ORTHO05D004642 5.6e-24 115.9 177 36.7
Duzib041G0680 Durio zibethinus HOM05D003898 ORTHO05D004642 1.2e-23 114.8 106 56.6
unitig_32.g11144 Utricularia gibba HOM05D003898 ORTHO05D004642 2.0e-21 107.5 169 40.2
arahy.Tifrunner.gnm1.ann1.N7W281 Arachis hypogaea HOM05D003898 ORTHO05D004642 1.7e-20 104.4 159 37.7
Aqoxy480s002 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 3.3e-16 90.1 122 39.3
arahy.Tifrunner.gnm1.ann1.9J7JQ6 Arachis hypogaea HOM05D003898 ORTHO05D004642 6.2e-15 85.9 57 64.9
Peaxi162Scf00756g00110 Petunia axillaris HOM05D003898 ORTHO05D004642 7.1e-11 72.4 92 41.3
QL10p044069 Quercus lobata HOM05D003898 ORTHO05D004642 1.7e-09 67.8 80 43.8
Ah.05g170600 Amaranthus hybridus HOM05D003898 ORTHO05D004642 2.3e-09 67.4 73 46.6
arahy.Tifrunner.gnm1.ann1.KW4E90 Arachis hypogaea HOM05D003898 ORTHO05D004642 6.6e-09 65.9 36 72.2
QL02p062685 Quercus lobata HOM05D003898 ORTHO05D004642 3.3e-08 63.5 80 42.5
Aqoxy5G01116 Aquilegia oxysepala HOM05D003898 ORTHO05D004642 1.3e-07 61.6 43 67.4


User provided reference genes

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