Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.8e-102 375.2 177 100.0
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 7.4e-26 121.3 155 47.1
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 4.0e-24 115.5 159 47.2
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 1.1e-21 107.5 74 71.6
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 1.1e-21 107.5 74 73.0
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 6.0e-20 101.7 74 70.3
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 7.9e-20 101.3 64 76.6
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 5.1e-19 98.6 73 67.1
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 5.1e-19 98.6 73 67.1
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 5.1e-19 98.6 58 81.0
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 5.1e-19 98.6 67 71.6
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 5.1e-19 98.6 58 81.0
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 5.1e-19 98.6 73 68.5
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 1.1e-18 97.4 58 77.6
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 1.1e-18 97.4 58 77.6
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 1.5e-18 97.1 68 69.1
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 1.5e-18 97.1 65 72.3
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 1.9e-18 96.7 73 65.8
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 1.9e-18 96.7 73 65.8
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 1.9e-18 96.7 68 67.6
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 1.9e-18 96.7 73 67.1
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 1.9e-18 96.7 67 67.2
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.5e-18 96.3 58 75.9
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 3.3e-18 95.9 67 68.7
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 3.3e-18 95.9 65 76.9
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 3.3e-18 95.9 66 68.2
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 5.7e-18 95.1 67 70.1
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 5.7e-18 95.1 58 75.9
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 5.7e-18 95.1 58 75.9
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 5.7e-18 95.1 58 77.6
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 5.7e-18 95.1 68 67.6
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 7.4e-18 94.7 67 68.7
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 7.4e-18 94.7 67 70.1
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 7.4e-18 94.7 67 70.1
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 7.4e-18 94.7 67 70.1
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 7.4e-18 94.7 58 77.6
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 7.4e-18 94.7 67 70.1
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 9.6e-18 94.4 58 75.9
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 1.3e-17 94.0 67 70.1
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 1.3e-17 94.0 59 78.0
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 1.3e-17 94.0 59 78.0
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 1.6e-17 93.6 59 76.3
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 1.6e-17 93.6 68 66.2
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 1.6e-17 93.6 68 66.2
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 1.6e-17 93.6 68 66.2
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.6e-17 93.6 67 68.7
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 2.1e-17 93.2 59 76.3
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 2.1e-17 93.2 67 65.7
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 2.1e-17 93.2 70 64.3
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 2.1e-17 93.2 68 66.2
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 2.8e-17 92.8 65 69.2
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 2.8e-17 92.8 68 66.2
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 2.8e-17 92.8 66 65.2
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 2.8e-17 92.8 67 67.2
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 2.8e-17 92.8 65 70.8
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 3.7e-17 92.4 59 76.3
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 3.7e-17 92.4 67 68.7
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 3.7e-17 92.4 59 76.3
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 3.7e-17 92.4 59 76.3
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.7e-17 92.4 59 76.3
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 4.8e-17 92.0 59 76.3
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 6.2e-17 91.7 67 67.2
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 6.2e-17 91.7 59 74.6
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 6.2e-17 91.7 66 69.7
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 6.2e-17 91.7 59 76.3
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 6.2e-17 91.7 59 76.3
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 6.2e-17 91.7 59 74.6
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 8.2e-17 91.3 73 61.6
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 8.2e-17 91.3 73 61.6
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 8.2e-17 91.3 59 74.6
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 1.1e-16 90.9 67 65.7
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 1.1e-16 90.9 59 74.6
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 1.1e-16 90.9 67 65.7
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 1.4e-16 90.5 67 67.2
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 1.4e-16 90.5 58 74.1
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.4e-16 90.5 59 74.6
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 1.4e-16 90.5 59 74.6
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 1.4e-16 90.5 59 72.9
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 1.4e-16 90.5 66 68.2
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 1.4e-16 90.5 66 68.2
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.8e-16 90.1 59 74.6
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 2.4e-16 89.7 59 74.6
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 2.4e-16 89.7 67 65.7
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 2.4e-16 89.7 67 65.7
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 2.4e-16 89.7 67 67.2
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 2.4e-16 89.7 67 67.2
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 2.4e-16 89.7 67 67.2
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 3.1e-16 89.4 59 74.6
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 4.1e-16 89.0 59 72.9
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 4.1e-16 89.0 59 71.2
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 5.3e-16 88.6 59 72.9
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 5.3e-16 88.6 59 72.9
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 5.3e-16 88.6 59 72.9
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 5.3e-16 88.6 59 72.9
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 5.3e-16 88.6 59 72.9
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 5.3e-16 88.6 59 72.9
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 5.3e-16 88.6 59 72.9
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 5.3e-16 88.6 59 72.9
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 5.3e-16 88.6 59 72.9
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 5.3e-16 88.6 59 72.9
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 5.3e-16 88.6 59 72.9
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 5.3e-16 88.6 59 72.9
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 6.9e-16 88.2 67 64.2
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 6.9e-16 88.2 59 72.9
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 6.9e-16 88.2 68 64.7
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.2e-15 87.4 68 61.8
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.2e-15 87.4 68 61.8
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 3.4e-15 85.9 59 69.5
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 4.5e-15 85.5 59 71.2
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 1.4e-13 80.5 66 59.1
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 5.5e-13 78.6 66 57.6
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 2.1e-12 76.6 77 51.9
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 4.6e-12 75.5 67 53.7
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 4.6e-12 75.5 67 53.7
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 6.1e-12 75.1 67 53.7
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 6.1e-12 75.1 67 53.7
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 6.1e-12 75.1 67 53.7
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 6.1e-12 75.1 67 53.7
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 6.1e-12 75.1 67 53.7
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 7.9e-12 74.7 67 53.7
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 7.9e-12 74.7 67 53.7
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 7.9e-12 74.7 67 53.7
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 7.9e-12 74.7 67 53.7
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 7.9e-12 74.7 67 53.7
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 1.3e-11 73.9 67 53.7
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 1.3e-11 73.9 67 53.7
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.3e-11 73.2 60 56.7
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 1.5e-10 70.5 44 75.0
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 7.4e-10 68.2 44 70.5
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 1.6e-09 67.0 66 51.5
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 8.2e-09 64.7 68 52.9
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 2.4e-08 63.2 62 50.0
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 1.0e-06 57.8 34 76.5
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 8.5e-06 54.7 67 50.7


User provided reference genes

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