Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 2243.0 1121 100.0
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 2137.1 1121 96.3
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1401.7 1127 62.8
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1370.1 985 72.2
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1310.4 1125 59.6
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1300.4 1120 57.9
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1211.1 1145 54.1
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1184.9 1131 52.7
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1179.5 1117 53.7
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1179.5 1142 53.1
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1175.2 1129 52.6
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1173.3 1128 52.4
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1173.3 1116 52.7
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1171.4 1120 52.5
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1168.3 1121 52.9
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1167.9 1131 53.1
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1167.1 1120 52.1
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1165.6 1126 52.2
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1164.8 1143 52.7
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1164.8 1129 52.3
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1164.1 1128 52.0
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1162.1 1119 51.3
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1162.1 1140 52.5
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1162.1 1129 52.2
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1161.7 1127 52.0
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1160.6 1133 52.6
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1160.2 1129 52.6
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1159.8 1127 52.4
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1159.8 1127 52.4
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1159.8 1126 51.7
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1158.3 1126 52.5
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1157.5 1121 51.7
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1157.1 1129 51.9
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1156.4 1139 52.4
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1156.0 1143 51.6
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1156.0 1117 51.6
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1156.0 1124 51.6
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1156.0 1133 52.6
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1155.6 1118 52.1
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1154.8 1128 51.7
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1154.4 1126 51.7
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1153.7 1117 51.6
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1153.3 1120 51.6
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1153.3 1118 52.1
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1151.7 1125 51.9
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1149.4 1141 51.1
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1149.0 1118 52.1
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1148.7 1127 52.4
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1148.7 1128 52.3
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1148.7 1126 51.2
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1148.3 1115 52.0
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1147.9 1121 52.4
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1147.1 1133 51.8
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1146.7 1121 51.9
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1146.7 1113 52.4
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1146.7 1120 51.1
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1145.6 1117 52.1
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1145.6 1141 51.4
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1145.2 1136 51.5
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1145.2 1127 51.7
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1145.2 1129 52.1
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1145.2 1126 51.1
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1144.8 1129 52.3
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1144.4 1130 51.9
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1143.6 1126 52.2
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1142.5 1114 52.2
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1142.1 1128 52.0
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1141.7 1120 51.3
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1140.9 1111 51.9
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1140.9 1111 51.9
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1140.6 1114 51.9
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1140.2 1111 51.9
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1139.8 1111 51.9
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1139.4 1111 51.9
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1139.0 1121 52.2
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1138.3 1133 52.2
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1137.9 1129 51.8
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1137.5 1137 51.6
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1136.7 1144 50.3
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1134.8 1125 51.0
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1134.4 1118 51.3
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1134.0 1122 51.2
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1133.2 1114 51.1
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1132.5 1117 51.4
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1132.5 1127 52.3
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1132.1 1115 51.4
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1131.3 1127 51.2
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1131.3 1129 50.8
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1130.5 1126 51.2
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1129.8 1127 52.2
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1129.4 1147 50.7
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1128.2 1120 51.2
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1127.9 1116 50.8
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1127.5 1120 50.5
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1127.5 1056 53.2
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1126.7 1119 50.8
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1126.7 1112 51.0
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1125.5 1121 51.5
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1124.4 1128 50.9
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1123.6 1134 50.2
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1123.2 1151 50.3
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1122.8 1094 51.7
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1121.7 1112 51.5
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1119.0 1148 50.0
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1117.1 1122 51.2
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1109.7 1129 50.8
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1097.0 1118 49.9
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1088.6 1039 52.0
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1084.3 1209 47.6
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1075.5 1209 47.5
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 9.9e-310 1067.0 1127 49.8
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 2.2e-309 1065.8 1022 52.9
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 8.4e-301 1037.3 1115 48.1
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 4.2e-300 1035.0 1141 48.0
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 3.4e-294 1015.4 1039 50.1
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 3.8e-285 985.3 1047 49.3
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 3.6e-267 925.6 1112 44.8
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 3.6e-267 925.6 843 56.0
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 4.5e-262 908.7 834 55.8
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 7.7e-246 854.7 735 58.1
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 9.1e-239 831.2 710 57.6
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 4.0e-234 815.8 760 53.7
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 1.1e-210 738.0 752 49.6
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.5e-204 717.6 862 45.7
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 2.6e-201 706.8 658 54.9
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 1.6e-179 634.4 537 57.5
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 3.4e-177 626.7 674 49.1
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 3.0e-165 587.0 634 48.9
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.4e-130 471.1 477 53.0
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 4.7e-126 456.8 1019 30.2
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 4.0e-117 427.2 572 42.3
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 2.3e-109 401.4 345 56.2
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.1e-102 378.3 352 55.7
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 3.8e-75 287.7 379 42.2
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 2.5e-50 205.3 132 66.7
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 9.7e-47 193.4 283 37.8
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 5.0e-43 181.0 228 43.0
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 4.3e-39 167.9 139 55.4
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 4.8e-38 164.5 237 40.5
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 1.1e-26 126.7 158 41.1
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 2.2e-22 112.5 72 68.1
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 2.0e-20 105.9 248 32.7
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 8.0e-17 94.0 125 40.8
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 4.0e-16 91.7 94 51.1
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 1.3e-14 86.7 88 45.5
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 2.4e-13 82.4 104 43.3
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 2.9e-11 75.5 49 65.3
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 2.7e-09 68.9 72 45.8
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 4.4e-07 61.6 55 60.0
Os05g0105050 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D297587 6.3e-06 57.8 79 44.3
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 8.3e-06 57.4 42 64.3


User provided reference genes

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