Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 0.0e+00 2338.1 1212 100.0
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 0.0e+00 1959.5 1223 82.3
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 0.0e+00 1136.3 1248 51.0
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 3.8e-275 952.2 1245 43.6
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 4.2e-274 948.7 1245 43.4
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 2.8e-273 946.0 1235 43.7
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.0e-272 944.1 1236 43.3
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 1.4e-272 943.7 1233 44.0
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 4.4e-271 938.7 1245 42.7
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 9.8e-271 937.6 1237 43.5
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 3.5e-268 929.1 1235 43.4
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 4.5e-268 928.7 1223 43.3
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 5.9e-268 928.3 1240 43.1
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 1.0e-267 927.5 1232 42.9
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 1.7e-267 926.8 1233 42.7
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 3.8e-267 925.6 1236 42.6
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 5.0e-267 925.2 1229 43.2
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 1.1e-266 924.1 1244 43.0
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 1.9e-266 923.3 1239 43.0
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 2.5e-266 922.9 1230 42.5
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 1.2e-265 920.6 1240 43.2
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 2.8e-265 919.5 1235 42.7
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 4.7e-265 918.7 1234 42.5
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 6.1e-265 918.3 1243 43.0
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 1.4e-264 917.1 1242 41.8
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 2.3e-264 916.4 1233 42.1
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 3.0e-264 916.0 1245 42.1
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 3.0e-264 916.0 1223 43.1
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 6.8e-264 914.8 1241 42.9
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 2.6e-263 912.9 1220 43.1
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 5.8e-263 911.8 1199 43.5
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.3e-262 910.6 1223 42.8
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 2.2e-262 909.8 1243 43.0
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 3.7e-262 909.1 1235 42.9
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 4.9e-262 908.7 1235 41.9
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 1.1e-261 907.5 1240 41.4
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.1e-261 907.5 1223 42.7
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 1.4e-261 907.1 1234 41.7
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 1.9e-261 906.7 1202 42.8
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 3.2e-261 906.0 1249 42.2
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 5.4e-261 905.2 1223 42.7
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 7.0e-261 904.8 1231 42.9
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 1.6e-260 903.7 1235 41.9
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 1.6e-260 903.7 1237 42.4
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 2.0e-260 903.3 1239 41.2
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 2.7e-260 902.9 1223 42.7
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 2.7e-260 902.9 1232 41.9
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 4.6e-260 902.1 1188 43.8
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 4.6e-260 902.1 1234 41.8
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.7e-259 900.2 1206 42.5
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 2.3e-259 899.8 1245 41.8
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 3.9e-259 899.0 1235 41.5
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 5.6e-258 895.2 1233 42.2
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 9.5e-258 894.4 1225 42.6
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 1.2e-257 894.0 1234 42.1
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 1.6e-257 893.6 1244 42.3
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 2.1e-257 893.3 1239 41.2
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 2.8e-257 892.9 1239 41.2
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 2.8e-257 892.9 1237 41.6
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 2.8e-257 892.9 1232 42.6
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 6.2e-257 891.7 1233 42.3
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 8.0e-257 891.3 1240 41.4
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 2.3e-256 889.8 1240 41.3
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 4.0e-256 889.0 1240 40.9
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 4.0e-256 889.0 1233 41.6
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 6.8e-256 888.3 1223 42.3
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 8.9e-256 887.9 1231 41.8
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 8.9e-256 887.9 1241 41.1
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.5e-255 887.1 1217 43.0
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 2.6e-255 886.3 1228 41.4
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 3.4e-255 885.9 1226 41.1
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 5.8e-255 885.2 1194 41.5
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 7.5e-255 884.8 1230 41.7
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 1.4e-253 880.6 1236 41.2
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 1.9e-253 880.2 1223 40.9
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 2.4e-253 879.8 1225 41.4
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 7.0e-253 878.2 1242 41.8
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 9.2e-253 877.9 1198 41.5
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 9.2e-253 877.9 1222 41.8
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 2.1e-252 876.7 1251 41.0
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 3.5e-252 875.9 1235 41.6
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 3.5e-252 875.9 1232 41.1
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 1.7e-251 873.6 1236 40.4
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 8.6e-251 871.3 1239 40.3
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 1.5e-250 870.5 1203 40.8
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 1.9e-250 870.2 1191 41.2
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 3.3e-250 869.4 1246 41.3
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 4.7e-249 865.5 1229 40.2
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 1.1e-248 864.4 1198 41.1
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 2.4e-245 853.2 1198 40.8
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 4.1e-245 852.4 1239 41.1
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 9.2e-245 851.3 1225 40.1
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 9.5e-242 841.3 1134 41.4
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 1.4e-240 837.4 1193 40.7
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 3.8e-238 829.3 1294 38.8
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 1.7e-235 820.5 1219 40.7
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 3.0e-235 819.7 1236 39.4
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 3.8e-230 802.7 1224 38.9
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 5.6e-226 788.9 1247 38.3
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 2.8e-225 786.6 1230 39.2
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 5.3e-224 782.3 1171 40.9
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 2.2e-222 776.9 1166 38.9
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 2.1e-220 770.4 1040 41.3
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 1.1e-210 738.0 1010 41.8
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 9.0e-208 728.4 1325 36.2
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 2.6e-191 673.7 1068 38.6
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 6.3e-185 652.5 909 40.0
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 2.4e-184 650.6 828 43.6
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.8e-179 634.4 805 44.2
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 8.0e-172 609.0 981 37.3
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 4.6e-143 513.5 1187 31.5
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 5.0e-142 510.0 1175 31.1
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 3.7e-137 493.8 1161 30.7
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 1.2e-135 488.8 777 39.6
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 3.3e-133 480.7 1174 30.2
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 8.9e-131 472.6 1174 29.9
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 1.2e-127 462.2 651 41.0
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.3e-125 453.0 627 41.1
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.9e-113 414.5 596 42.3
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 1.8e-107 395.2 991 31.1
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.9e-103 379.8 565 41.4
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 5.6e-101 373.6 535 39.3
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.3e-92 345.9 504 41.1
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 3.9e-86 324.3 471 39.5
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 7.4e-85 320.1 1366 26.0
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 8.2e-84 316.6 429 43.6
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 2.8e-60 238.4 332 43.7
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 5.9e-50 204.1 308 41.6
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 9.1e-43 180.3 270 41.1
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 1.8e-38 166.0 801 24.8
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 1.8e-38 166.0 226 42.5
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 4.6e-34 151.4 188 46.3
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 1.4e-30 139.8 219 37.9
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 1.6e-26 126.3 207 39.6
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 5.6e-24 117.9 452 25.7
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 5.2e-22 111.3 505 23.4
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 5.8e-21 107.8 104 48.1
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 6.0e-10 71.2 76 48.7
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 7.8e-10 70.9 88 45.5
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 8.6e-09 67.4 213 27.2
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 6.2e-07 61.2 61 52.5
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 6.2e-07 61.2 61 52.5
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.1e-06 60.5 71 40.8


User provided reference genes

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