Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 7.8e-55 216.9 107 100.0
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.1e-16 90.1 73 65.8
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 3.7e-12 75.1 73 52.1
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 8.2e-12 73.9 73 52.1
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.1e-11 73.6 67 55.2
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 1.4e-11 73.2 67 55.2
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 6.9e-11 70.9 73 49.3
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 6.9e-11 70.9 87 43.7
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 1.5e-10 69.7 67 52.2
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 1.5e-10 69.7 71 49.3
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 1.5e-10 69.7 65 53.8
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 1.5e-10 69.7 71 47.9
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 1.5e-10 69.7 73 47.9
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 2.6e-10 68.9 67 52.2
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 3.4e-10 68.6 67 53.7
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 3.4e-10 68.6 67 52.2
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 4.5e-10 68.2 67 55.2
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 4.5e-10 68.2 83 44.6
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 4.5e-10 68.2 65 53.8
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 4.5e-10 68.2 65 53.8
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 4.5e-10 68.2 67 53.7
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 4.5e-10 68.2 71 47.9
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 4.5e-10 68.2 67 52.2
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 5.8e-10 67.8 67 53.7
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 5.8e-10 67.8 71 47.9
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 5.8e-10 67.8 67 52.2
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 5.8e-10 67.8 71 47.9
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 5.8e-10 67.8 65 53.8
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 5.8e-10 67.8 73 47.9
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 7.6e-10 67.4 81 44.4
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 7.6e-10 67.4 67 50.7
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 7.6e-10 67.4 65 52.3
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 7.6e-10 67.4 67 50.7
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 7.6e-10 67.4 65 52.3
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 7.6e-10 67.4 65 52.3
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 1.0e-09 67.0 67 50.7
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 1.0e-09 67.0 67 50.7
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 1.0e-09 67.0 73 46.6
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 1.0e-09 67.0 67 50.7
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 1.0e-09 67.0 64 53.1
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 1.0e-09 67.0 67 50.7
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 1.0e-09 67.0 67 50.7
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 1.0e-09 67.0 67 50.7
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 1.0e-09 67.0 67 50.7
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 1.0e-09 67.0 67 53.7
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 1.3e-09 66.6 67 53.7
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 1.3e-09 66.6 67 53.7
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 1.7e-09 66.2 67 50.7
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 1.7e-09 66.2 67 50.7
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 1.7e-09 66.2 67 50.7
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 1.7e-09 66.2 67 50.7
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 1.7e-09 66.2 67 50.7
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 1.7e-09 66.2 67 50.7
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 1.7e-09 66.2 67 50.7
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 1.7e-09 66.2 67 53.7
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 1.7e-09 66.2 67 50.7
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 2.2e-09 65.9 67 53.7
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 2.2e-09 65.9 67 49.3
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 2.9e-09 65.5 65 50.8
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 2.9e-09 65.5 72 45.8
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.9e-09 65.5 72 45.8
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.9e-09 65.5 72 45.8
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.9e-09 65.5 72 45.8
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 2.9e-09 65.5 72 45.8
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 3.8e-09 65.1 67 49.3
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 3.8e-09 65.1 73 45.2
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 3.8e-09 65.1 67 47.8
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 3.8e-09 65.1 73 45.2
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 3.8e-09 65.1 73 45.2
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 3.8e-09 65.1 67 52.2
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 4.9e-09 64.7 65 49.2
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 4.9e-09 64.7 65 49.2
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 4.9e-09 64.7 65 49.2
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 4.9e-09 64.7 65 49.2
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 4.9e-09 64.7 65 49.2
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 4.9e-09 64.7 65 49.2
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 4.9e-09 64.7 67 49.3
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 4.9e-09 64.7 67 49.3
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 4.9e-09 64.7 67 52.2
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 4.9e-09 64.7 65 50.8
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 6.5e-09 64.3 67 50.7
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 6.5e-09 64.3 67 49.3
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 6.5e-09 64.3 65 50.8
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 8.4e-09 63.9 67 52.2
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 8.4e-09 63.9 65 52.3
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 1.1e-08 63.5 67 49.3
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 1.1e-08 63.5 73 45.2
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 1.4e-08 63.2 65 52.3
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 1.4e-08 63.2 65 52.3
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 1.4e-08 63.2 67 47.8
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 1.4e-08 63.2 67 47.8
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 1.9e-08 62.8 67 46.3
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 1.9e-08 62.8 67 46.3
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 3.2e-08 62.0 59 52.5
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 4.2e-08 61.6 67 47.8
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 5.5e-08 61.2 67 49.3
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 7.1e-08 60.8 65 47.7
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 9.3e-08 60.5 65 52.3
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 9.3e-08 60.5 67 44.8
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 1.2e-07 60.1 61 50.8
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 1.6e-07 59.7 67 49.3
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 2.1e-07 59.3 71 46.5
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 2.7e-07 58.9 75 50.7
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 2.7e-07 58.9 74 47.3
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 3.5e-07 58.5 100 43.0
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 6.0e-07 57.8 67 47.8
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 1.0e-06 57.0 65 49.2
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 1.0e-06 57.0 65 49.2
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 1.0e-06 57.0 65 49.2
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 3.0e-06 55.5 66 47.0
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 3.0e-06 55.5 64 48.4
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 3.0e-06 55.5 64 48.4
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 5.1e-06 54.7 62 48.4
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 5.1e-06 54.7 64 46.9
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 5.1e-06 54.7 64 48.4
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 8.7e-06 53.9 62 46.8


User provided reference genes

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