Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 2.2e-86 322.4 179 100.0
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 3.9e-35 152.1 184 51.6
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 2.0e-34 149.8 187 52.4
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 2.6e-34 149.4 185 53.5
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 5.7e-34 148.3 181 51.9
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 6.3e-33 144.8 185 50.8
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 8.2e-33 144.4 185 51.4
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 8.2e-33 144.4 183 53.0
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 1.4e-32 143.7 185 51.4
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 3.1e-32 142.5 190 48.4
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 3.1e-32 142.5 178 50.6
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 1.5e-31 140.2 176 53.4
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 3.5e-31 139.0 197 50.8
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 7.7e-31 137.9 191 49.7
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 1.7e-30 136.7 182 53.3
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 3.8e-30 135.6 184 51.6
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 5.0e-30 135.2 190 49.5
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 5.0e-30 135.2 182 51.1
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 8.5e-30 134.4 186 45.2
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 8.5e-30 134.4 181 50.3
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 1.1e-29 134.0 185 48.6
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.5e-29 133.7 181 50.8
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 1.9e-29 133.3 187 48.1
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 3.2e-29 132.5 189 50.3
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 5.5e-29 131.7 194 47.9
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 1.2e-28 130.6 183 48.6
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 1.6e-28 130.2 182 48.4
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 1.6e-28 130.2 188 47.3
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 1.6e-28 130.2 182 47.8
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 3.6e-28 129.0 180 46.7
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 3.6e-28 129.0 186 47.3
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 4.7e-28 128.6 181 49.7
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 8.0e-28 127.9 185 49.2
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 1.0e-27 127.5 180 50.0
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 1.0e-27 127.5 190 45.8
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.4e-27 127.1 185 46.5
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 1.4e-27 127.1 192 45.8
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 1.4e-27 127.1 183 48.1
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 1.4e-27 127.1 188 46.8
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 1.8e-27 126.7 181 49.2
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.8e-27 126.7 182 47.8
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.3e-27 126.3 184 48.4
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 3.0e-27 125.9 186 47.8
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 3.9e-27 125.6 187 48.7
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 5.2e-27 125.2 186 45.7
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 5.2e-27 125.2 189 48.7
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 6.7e-27 124.8 188 50.0
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 8.8e-27 124.4 188 50.0
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 1.1e-26 124.0 191 47.6
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 2.6e-26 122.9 179 46.4
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 4.4e-26 122.1 180 45.0
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 7.4e-26 121.3 183 50.8
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 1.7e-25 120.2 185 48.6
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 1.7e-25 120.2 188 47.3
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 2.2e-25 119.8 182 44.5
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 2.8e-25 119.4 190 45.3
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 3.7e-25 119.0 182 46.7
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 1.1e-24 117.5 177 49.2
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 1.4e-24 117.1 139 51.8
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 1.8e-24 116.7 187 46.0
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 1.8e-24 116.7 189 48.1
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 2.4e-24 116.3 185 45.4
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 2.4e-24 116.3 184 45.1
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 7.0e-24 114.8 183 47.0
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 7.0e-24 114.8 181 46.4
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 1.2e-23 114.0 185 47.0
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 1.2e-23 114.0 178 46.6
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 2.6e-23 112.8 181 44.8
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 5.9e-23 111.7 184 47.8
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 1.0e-22 110.9 184 44.6
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 1.0e-22 110.9 189 45.0
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 2.2e-22 109.8 185 44.3
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 2.9e-22 109.4 177 46.9
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 3.8e-22 109.0 184 47.8
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 5.0e-22 108.6 184 44.6
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 1.1e-21 107.5 186 43.5
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 1.5e-21 107.1 181 45.9
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 1.5e-21 107.1 181 45.9
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 1.5e-21 107.1 181 45.9
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 1.9e-21 106.7 184 44.6
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 1.9e-21 106.7 195 44.1
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 1.9e-21 106.7 181 42.5
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 1.9e-21 106.7 185 44.9
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 2.5e-21 106.3 183 44.8
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.5e-21 106.3 135 51.9
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 7.2e-21 104.8 186 44.6
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 9.4e-21 104.4 183 42.1
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 9.4e-21 104.4 150 50.0
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 1.2e-20 104.0 185 44.3
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 1.2e-20 104.0 185 44.3
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 1.2e-20 104.0 135 51.1
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.6e-20 103.6 185 42.2
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 3.6e-20 102.4 185 42.2
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 4.7e-20 102.1 190 43.2
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.4e-19 100.5 181 42.5
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 1.8e-19 100.1 188 44.7
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 5.2e-19 98.6 185 42.7
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 5.2e-19 98.6 180 40.6
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 5.2e-19 98.6 186 42.5
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 6.8e-19 98.2 185 42.7
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 1.2e-18 97.4 150 47.3
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 3.4e-18 95.9 150 46.7
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 9.8e-18 94.4 185 41.6
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 9.8e-18 94.4 185 41.6
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 9.8e-18 94.4 185 41.6
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 2.8e-17 92.8 179 45.3
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 6.3e-17 91.7 116 44.0
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 3.1e-16 89.4 181 39.2
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 9.1e-16 87.8 186 40.9
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 1.6e-15 87.0 144 45.1
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 2.0e-15 86.7 115 47.0
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 1.0e-14 84.3 187 40.1
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.0e-14 84.3 134 47.0
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 1.3e-14 84.0 150 44.0
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.9e-13 80.1 183 39.9
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 2.5e-13 79.7 183 39.9
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 3.2e-13 79.3 141 45.4
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 4.2e-13 79.0 183 39.9
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 1.6e-12 77.0 183 39.9
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 3.6e-12 75.9 130 43.1
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 8.0e-12 74.7 130 43.1
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 1.8e-11 73.6 178 37.6
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 3.0e-11 72.8 176 40.9
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 6.8e-11 71.6 130 43.8
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 4.4e-10 68.9 202 37.1
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 8.3e-09 64.7 73 47.9
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 1.4e-08 63.9 117 41.9
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 1.4e-08 63.9 103 40.8
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 4.1e-08 62.4 82 47.6
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 1.3e-06 57.4 139 34.5
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 2.3e-06 56.6 91 42.9


User provided reference genes

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