Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 0.0e+00 1874.4 987 100.0
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 1.1e-94 352.4 335 58.2
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 5.1e-60 237.3 260 49.6
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 3.3e-59 234.6 264 49.2
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 2.2e-58 231.9 267 51.3
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 3.7e-58 231.1 260 50.8
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 3.7e-58 231.1 254 50.0
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 3.7e-58 231.1 310 45.2
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 2.4e-57 228.4 254 52.0
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 2.4e-57 228.4 254 52.0
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 2.4e-57 228.4 256 49.2
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 4.1e-57 227.6 253 50.2
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 5.3e-57 227.3 266 48.9
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 5.3e-57 227.3 277 48.0
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 9.1e-57 226.5 264 49.6
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 1.2e-56 226.1 256 48.4
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 1.5e-56 225.7 265 49.8
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 2.0e-56 225.3 264 49.6
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 4.5e-56 224.2 312 44.2
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 1.3e-55 222.6 257 49.8
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 1.7e-55 222.2 266 47.7
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 2.2e-55 221.9 253 50.2
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 2.9e-55 221.5 260 48.8
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 2.9e-55 221.5 272 46.7
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 2.9e-55 221.5 257 47.5
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 3.8e-55 221.1 261 49.0
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 5.0e-55 220.7 254 49.2
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 5.0e-55 220.7 253 48.6
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 6.5e-55 220.3 260 47.7
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 6.5e-55 220.3 267 45.7
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 6.5e-55 220.3 278 45.7
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 1.1e-54 219.5 312 43.9
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 1.1e-54 219.5 257 47.1
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 1.4e-54 219.2 275 45.8
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 1.9e-54 218.8 301 45.2
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 1.9e-54 218.8 353 42.5
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 2.5e-54 218.4 314 43.6
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 2.5e-54 218.4 284 45.4
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 3.2e-54 218.0 248 48.0
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 4.2e-54 217.6 253 48.6
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 5.5e-54 217.2 255 46.7
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 7.2e-54 216.9 248 48.0
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 7.2e-54 216.9 271 47.2
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 9.4e-54 216.5 259 47.9
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 1.6e-53 215.7 273 45.8
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 2.1e-53 215.3 274 46.4
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 2.1e-53 215.3 287 44.9
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 4.7e-53 214.2 272 46.0
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 6.1e-53 213.8 274 45.6
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 7.9e-53 213.4 249 47.4
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.0e-52 213.0 326 41.7
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.8e-52 212.2 325 42.2
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 2.3e-52 211.8 325 41.8
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 3.0e-52 211.5 260 46.9
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 3.0e-52 211.5 362 40.3
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 3.9e-52 211.1 251 46.6
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 3.9e-52 211.1 325 41.8
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 6.7e-52 210.3 325 41.8
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 8.8e-52 209.9 254 46.9
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 8.8e-52 209.9 254 46.1
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 8.8e-52 209.9 254 47.6
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 1.1e-51 209.5 251 47.0
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 1.1e-51 209.5 325 41.8
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 2.0e-51 208.8 322 41.0
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 2.6e-51 208.4 254 46.1
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 2.6e-51 208.4 278 44.2
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 2.6e-51 208.4 281 45.9
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 1.7e-50 205.7 240 49.6
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 2.8e-50 204.9 361 41.3
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 8.2e-50 203.4 258 44.2
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 1.4e-49 202.6 317 42.3
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 5.3e-49 200.7 310 42.3
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 1.5e-48 199.1 349 40.7
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.5e-48 199.1 274 43.1
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 3.5e-48 198.0 274 43.1
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 1.3e-47 196.1 367 39.0
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 1.7e-47 195.7 314 39.5
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 1.7e-47 195.7 362 39.0
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 1.7e-47 195.7 392 36.7
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 9.4e-46 189.9 321 39.9
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 4.7e-45 187.6 476 34.2
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 1.4e-44 186.0 409 36.7
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 4.0e-36 157.9 198 44.9
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 1.4e-33 149.4 388 34.3
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 1.8e-33 149.1 248 40.7
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 4.5e-32 144.4 250 39.6
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 7.7e-32 143.7 170 47.6
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 2.7e-24 118.6 161 46.0
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 2.1e-21 109.0 114 46.5
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.8e-21 108.6 156 42.3
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 1.9e-14 85.9 251 30.3
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 5.6e-14 84.3 88 47.7
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 1.3e-10 73.2 100 42.0
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 1.7e-10 72.8 81 45.7
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 4.6e-08 64.7 97 36.1


User provided reference genes

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