Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 0.0e+00 1361.3 987 100.0
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 4.5e-290 1001.5 994 81.8
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 1.1e-30 139.8 395 35.9
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 1.4e-17 96.3 688 56.0
AagrBONN_evm.TU.Sc2ySwM_117.4020 Anthoceros agrestis HOM05D031910 ORTHO05D004558 1.6e-13 82.8 339 32.7
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 8.0e-13 80.5 136 38.2
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 5.2e-12 77.8 120 40.8
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.5e-11 76.3 115 40.9
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 3.4e-11 75.1 111 45.0
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 4.4e-11 74.7 138 37.0
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 7.5e-11 73.9 227 32.6
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.3e-10 73.2 106 41.5
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 2.9e-10 72.0 236 31.8
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 3.7e-10 71.6 111 44.1
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 3.7e-10 71.6 111 44.1
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 3.7e-10 71.6 111 43.2
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 3.7e-10 71.6 120 45.0
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 4.9e-10 71.2 116 44.8
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 4.9e-10 71.2 129 39.5
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 6.4e-10 70.9 111 37.8
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 8.3e-10 70.5 110 41.8
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 1.1e-09 70.1 117 40.2
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 1.1e-09 70.1 167 35.9
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.4e-09 69.7 199 36.7
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.4e-09 69.7 225 31.1
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 1.4e-09 69.7 121 40.5
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 1.9e-09 69.3 236 30.5
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 1.9e-09 69.3 151 35.1
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 1.9e-09 69.3 112 45.5
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 2.4e-09 68.9 107 43.0
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 2.4e-09 68.9 111 42.3
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 2.4e-09 68.9 111 41.4
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 3.2e-09 68.6 202 35.6
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 3.2e-09 68.6 203 32.5
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 4.1e-09 68.2 125 38.4
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 4.1e-09 68.2 112 41.1
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 5.4e-09 67.8 177 34.5
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 5.4e-09 67.8 151 37.1
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 5.4e-09 67.8 105 41.0
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 7.0e-09 67.4 106 41.5
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 7.0e-09 67.4 113 39.8
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 9.2e-09 67.0 161 34.2
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 9.2e-09 67.0 112 42.9
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.2e-08 66.6 178 32.0
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 1.2e-08 66.6 176 31.8
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.2e-08 66.6 186 32.8
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 1.2e-08 66.6 151 36.4
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 1.2e-08 66.6 121 38.8
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 1.6e-08 66.2 117 37.6
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.6e-08 66.2 123 39.8
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 1.6e-08 66.2 106 39.6
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.6e-08 66.2 108 44.4
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 2.0e-08 65.9 121 38.8
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 2.0e-08 65.9 128 38.3
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 2.0e-08 65.9 128 38.3
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 2.0e-08 65.9 108 39.8
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 2.0e-08 65.9 110 41.8
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 2.0e-08 65.9 115 39.1
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 2.0e-08 65.9 113 39.8
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 2.0e-08 65.9 108 39.8
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 2.7e-08 65.5 163 36.2
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 2.7e-08 65.5 118 41.5
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 2.7e-08 65.5 117 38.5
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 2.7e-08 65.5 121 36.4
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 2.7e-08 65.5 112 42.0
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 2.7e-08 65.5 112 42.0
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 2.7e-08 65.5 113 43.4
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 3.5e-08 65.1 115 40.0
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 3.5e-08 65.1 111 39.6
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 3.5e-08 65.1 232 30.6
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 3.5e-08 65.1 110 40.0
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 4.6e-08 64.7 113 42.5
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 4.6e-08 64.7 111 40.5
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 4.6e-08 64.7 119 39.5
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 4.6e-08 64.7 116 39.7
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 4.6e-08 64.7 106 40.6
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 4.6e-08 64.7 110 40.0
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 4.6e-08 64.7 111 41.4
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 6.0e-08 64.3 108 38.9
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 6.0e-08 64.3 116 37.9
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 7.8e-08 63.9 108 39.8
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 7.8e-08 63.9 111 41.4
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 7.8e-08 63.9 116 37.1
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 7.8e-08 63.9 106 40.6
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 7.8e-08 63.9 55 54.5
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 1.0e-07 63.5 229 30.6
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 1.0e-07 63.5 116 39.7
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 1.0e-07 63.5 117 38.5
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 1.0e-07 63.5 151 34.4
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.3e-07 63.2 182 32.4
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 1.3e-07 63.2 112 38.4
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 1.3e-07 63.2 116 36.2
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 1.3e-07 63.2 235 28.5
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 1.7e-07 62.8 111 38.7
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 1.7e-07 62.8 111 39.6
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 1.7e-07 62.8 116 37.9
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 2.3e-07 62.4 111 41.4
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 2.3e-07 62.4 109 39.4
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 2.3e-07 62.4 108 41.7
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 2.3e-07 62.4 164 31.7
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 3.0e-07 62.0 239 29.3
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 3.0e-07 62.0 112 41.1
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 3.0e-07 62.0 113 39.8
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 3.0e-07 62.0 126 42.1
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 3.9e-07 61.6 56 53.6
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 3.9e-07 61.6 107 41.1
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 3.9e-07 61.6 114 39.5
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 3.9e-07 61.6 55 52.7
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 3.9e-07 61.6 164 31.7
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 5.0e-07 61.2 116 40.5
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 5.0e-07 61.2 156 35.3
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 5.0e-07 61.2 55 50.9
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 6.6e-07 60.8 105 42.9
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 6.6e-07 60.8 113 36.3
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 6.6e-07 60.8 140 35.7
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 6.6e-07 60.8 261 30.7
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 8.6e-07 60.5 55 50.9
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.1e-06 60.1 113 35.4
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 1.1e-06 60.1 167 35.3
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.1e-06 60.1 58 55.2
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 1.1e-06 60.1 68 48.5
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 1.1e-06 60.1 55 52.7
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 1.5e-06 59.7 112 37.5
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 1.5e-06 59.7 55 50.9
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 1.5e-06 59.7 131 37.4
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 1.5e-06 59.7 55 52.7
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.5e-06 59.7 122 36.9
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 1.5e-06 59.7 122 36.9
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 1.5e-06 59.7 107 38.3
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 1.9e-06 59.3 220 28.6
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 1.9e-06 59.3 220 28.6
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 1.9e-06 59.3 55 49.1
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 1.9e-06 59.3 242 29.3
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 2.5e-06 58.9 56 50.0
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 2.5e-06 58.9 167 33.5
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 2.5e-06 58.9 167 33.5
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 2.5e-06 58.9 167 34.7
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 2.5e-06 58.9 121 35.5
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 2.5e-06 58.9 55 56.4
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 2.5e-06 58.9 92 42.4
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 2.5e-06 58.9 55 49.1
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 3.3e-06 58.5 60 53.3
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 3.3e-06 58.5 60 53.3
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 3.3e-06 58.5 55 52.7
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 3.3e-06 58.5 55 50.9
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 3.3e-06 58.5 111 36.9
Zm00001eb344910 Zea mays HOM05D003548 ORTHO05D004066 3.3e-06 58.5 55 50.9
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 4.3e-06 58.2 35 68.6
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 4.3e-06 58.2 107 37.4
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 4.3e-06 58.2 55 54.5
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 4.3e-06 58.2 55 50.9
Eucgr.D01792 Eucalyptus grandis HOM05D003548 ORTHO05D004066 4.3e-06 58.2 55 52.7
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 4.3e-06 58.2 181 30.9
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 4.3e-06 58.2 55 50.9
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 4.3e-06 58.2 55 52.7
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 4.3e-06 58.2 164 30.5
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 5.6e-06 57.8 113 37.2
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 5.6e-06 57.8 59 49.2
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 5.6e-06 57.8 173 31.2
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 5.6e-06 57.8 59 49.2
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 5.6e-06 57.8 56 50.0
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 5.6e-06 57.8 69 49.3
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 5.6e-06 57.8 131 35.1
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 5.6e-06 57.8 56 50.0
Nitab4.5_0000966g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 5.6e-06 57.8 56 48.2
Nitab4.5_0007898g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 5.6e-06 57.8 56 48.2
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 5.6e-06 57.8 56 48.2
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 5.6e-06 57.8 54 50.0
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 7.3e-06 57.4 220 28.2
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 7.3e-06 57.4 112 40.2
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 7.3e-06 57.4 56 51.8
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 7.3e-06 57.4 56 51.8
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 7.3e-06 57.4 55 49.1
Gohir.D03G080200 Gossypium hirsutum HOM05D003548 ORTHO05D004066 7.3e-06 57.4 55 49.1
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 7.3e-06 57.4 55 49.1
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 7.3e-06 57.4 56 46.4
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 7.3e-06 57.4 56 46.4
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 7.3e-06 57.4 108 36.1
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 9.5e-06 57.0 55 49.1
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 9.5e-06 57.0 106 36.8
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 9.5e-06 57.0 56 55.4
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 9.5e-06 57.0 34 70.6
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 9.5e-06 57.0 59 54.2
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 9.5e-06 57.0 55 50.9
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 9.5e-06 57.0 57 54.4


User provided reference genes

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