Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_23040 Physcomitrium patens HOM05D006681 ORTHO05D008338 4.1e-184 647.9 321 100.0
Pp3c11_23047 Physcomitrium patens HOM05D006681 ORTHO05D008338 9.1e-99 364.4 181 99.4
SMO367G0798 Selaginella moellendorffii HOM05D006681 ORTHO05D008338 3.1e-91 339.3 280 58.2
Mapoly0128s0008 Marchantia polymorpha HOM05D006681 ORTHO05D008338 2.9e-89 332.8 284 57.7
SalBow3G4078 Salvia bowleyana HOM05D006681 ORTHO05D008338 2.9e-89 332.8 304 54.3
Nn2g10531 Nelumbo nucifera HOM05D006681 ORTHO05D008338 5.0e-89 332.0 284 56.3
HanXRQChr05g0134071 Helianthus annuus HOM05D006681 ORTHO05D008338 6.5e-89 331.6 282 56.0
Os05g0117500 Oryza sativa ssp. japonica HOM05D006681 ORTHO05D008338 1.1e-88 330.9 284 55.6
Cc01_g12140 Coffea canephora HOM05D006681 ORTHO05D008338 1.4e-88 330.5 282 55.3
Aqoxy4G03072 Aquilegia oxysepala HOM05D006681 ORTHO05D008338 3.2e-88 329.3 286 54.5
Ca_19209_v3 Cicer arietinum L. HOM05D006681 ORTHO05D008338 7.2e-88 328.2 282 57.4
CiPaw.13G101600 Carya illinoinensis HOM05D006681 ORTHO05D008338 9.4e-88 327.8 298 53.7
Oeu040277.1 Olea europaea HOM05D006681 ORTHO05D008338 1.2e-87 327.4 282 56.7
Cfa011429 Carpinus fangiana HOM05D006681 ORTHO05D008338 2.7e-87 326.2 313 52.4
Gorai.009G102400 Gossypium raimondii HOM05D006681 ORTHO05D008338 2.7e-87 326.2 282 55.7
Migut.D02146 Erythranthe guttata HOM05D006681 ORTHO05D008338 6.1e-87 325.1 282 55.0
Lsat_1_v5_gn_8_78740 Lactuca sativa HOM05D006681 ORTHO05D008338 8.0e-87 324.7 282 55.7
Gohir.D05G098750 Gossypium hirsutum HOM05D006681 ORTHO05D008338 1.0e-86 324.3 282 55.3
Thecc.09G329700 Theobroma cacao HOM05D006681 ORTHO05D008338 1.0e-86 324.3 284 56.0
HPP92_006593 Vanilla planifolia HOM05D006681 ORTHO05D008338 1.4e-86 323.9 283 55.5
CANSAT54G2145 Cannabis sativa HOM05D006681 ORTHO05D008338 1.8e-86 323.6 304 54.3
Duzib170G0311 Durio zibethinus HOM05D006681 ORTHO05D008338 1.8e-86 323.6 283 55.1
EL10Ac7g15941 Beta vulgaris HOM05D006681 ORTHO05D008338 2.3e-86 323.2 281 55.5
ECA236G1321 Erigeron canadensis HOM05D006681 ORTHO05D008338 3.0e-86 322.8 282 55.7
TPR.G3006 Trifolium pratense HOM05D006681 ORTHO05D008338 5.2e-86 322.0 282 57.1
Gohir.A05G098700 Gossypium hirsutum HOM05D006681 ORTHO05D008338 6.7e-86 321.6 282 55.0
THA.LOC104814870 Tarenaya hassleriana HOM05D006681 ORTHO05D008338 6.7e-86 321.6 290 54.5
FAN16G0358 Fragaria x ananassa HOM05D006681 ORTHO05D008338 8.8e-86 321.2 281 55.5
MD11G1116600 Malus domestica HOM05D006681 ORTHO05D008338 8.8e-86 321.2 289 54.3
Sed0010670 Sechium edule HOM05D006681 ORTHO05D008338 8.8e-86 321.2 287 53.0
TAR633G1649 Trochodendron aralioides HOM05D006681 ORTHO05D008338 8.8e-86 321.2 281 54.1
Ciclev10028948m.g Citrus clementina HOM05D006681 ORTHO05D008338 1.1e-85 320.9 287 55.4
Lj3g0002575 Lotus japonicus HOM05D006681 ORTHO05D008338 1.1e-85 320.9 284 55.6
Potri.009G026700 Populus trichocarpa HOM05D006681 ORTHO05D008338 1.1e-85 320.9 283 55.5
CSS0007914 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 2.0e-85 320.1 299 51.8
arahy.Tifrunner.gnm1.ann1.SK7GFS Arachis hypogaea HOM05D006681 ORTHO05D008338 2.6e-85 319.7 282 56.0
MSTRG.18607 Avicennia marina HOM05D006681 ORTHO05D008338 2.6e-85 319.7 284 54.9
Thhalv10002615m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 2.6e-85 319.7 282 56.4
Eucgr.J02098 Eucalyptus grandis HOM05D006681 ORTHO05D008338 3.3e-85 319.3 296 53.4
Medtr4g062130 Medicago truncatula HOM05D006681 ORTHO05D008338 4.4e-85 318.9 282 56.0
Sopen11g030630 Solanum pennellii HOM05D006681 ORTHO05D008338 5.7e-85 318.5 281 53.7
TWI31G0387 Tripterygium wilfordii HOM05D006681 ORTHO05D008338 5.7e-85 318.5 281 56.2
FAN11G3596 Fragaria x ananassa HOM05D006681 ORTHO05D008338 9.7e-85 317.8 281 55.2
AagrBONN_evm.TU.Sc2ySwM_228.1772 Anthoceros agrestis HOM05D006681 ORTHO05D008338 1.3e-84 317.4 283 54.8
CSS0025304 Camellia sinensis var. sinensis HOM05D006681 ORTHO05D008338 1.3e-84 317.4 299 51.8
FvH4_3g34680 Fragaria vesca HOM05D006681 ORTHO05D008338 1.3e-84 317.4 281 55.2
PGSC0003DMG400015551 Solanum tuberosum HOM05D006681 ORTHO05D008338 1.3e-84 317.4 281 53.7
CAN.G1647.1 Capsicum annuum HOM05D006681 ORTHO05D008338 1.7e-84 317.0 281 53.0
CsaV3_6G022080 Cucumis sativus L. HOM05D006681 ORTHO05D008338 1.7e-84 317.0 287 51.2
QL01p034239 Quercus lobata HOM05D006681 ORTHO05D008338 1.7e-84 317.0 281 54.4
Solyc11g072970.2 Solanum lycopersicum HOM05D006681 ORTHO05D008338 1.7e-84 317.0 281 53.4
AL5G24960 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 2.8e-84 316.2 290 53.1
arahy.Tifrunner.gnm1.ann1.FZI6FG Arachis hypogaea HOM05D006681 ORTHO05D008338 2.8e-84 316.2 282 55.3
PSO339G5789 Papaver somniferum HOM05D006681 ORTHO05D008338 2.8e-84 316.2 284 54.2
PSO384G0101 Papaver somniferum HOM05D006681 ORTHO05D008338 2.8e-84 316.2 284 54.2
RcHm_v2.0_Chr5g0062361 Rosa chinensis HOM05D006681 ORTHO05D008338 3.7e-84 315.8 279 55.9
Zm00001eb266060 Zea mays HOM05D006681 ORTHO05D008338 3.7e-84 315.8 287 52.6
GSVIVG01025054001 Vitis vinifera HOM05D006681 ORTHO05D008338 4.8e-84 315.5 289 52.6
COL.COLO4_18427 Corchorus olitorius HOM05D006681 ORTHO05D008338 6.3e-84 315.1 295 52.9
Peaxi162Scf00411g00068 Petunia axillaris HOM05D006681 ORTHO05D008338 6.3e-84 315.1 284 52.5
AT3G46200 Arabidopsis thaliana HOM05D006681 ORTHO05D008338 8.2e-84 314.7 290 53.1
Sabra09G0017800 Salix brachista HOM05D006681 ORTHO05D008338 8.2e-84 314.7 283 54.4
A06p21000 Brassica napus HOM05D006681 ORTHO05D008338 4.1e-83 312.4 281 55.2
Prupe.6G086900 Prunus persica HOM05D006681 ORTHO05D008338 4.1e-83 312.4 281 54.8
Carub.0005s1203 Capsella rubella HOM05D006681 ORTHO05D008338 9.1e-83 311.2 295 51.5
Atru.chr3.3798 Acer truncatum HOM05D006681 ORTHO05D008338 1.2e-82 310.8 287 52.6
MBI14_g35939_MAGBIO Magnolia biondii HOM05D006681 ORTHO05D008338 2.0e-82 310.1 283 53.0
Psat7g220640 Pisum sativum HOM05D006681 ORTHO05D008338 2.0e-82 310.1 282 55.0
VMungo1127G1059 Vigna mungo HOM05D006681 ORTHO05D008338 2.0e-82 310.1 266 57.5
BraA06t25188Z Brassica rapa HOM05D006681 ORTHO05D008338 2.6e-82 309.7 281 54.8
PGR119G1802 Punica granatum HOM05D006681 ORTHO05D008338 2.6e-82 309.7 307 51.8
BcaC01g01926 Brassica carinata HOM05D006681 ORTHO05D008338 4.5e-82 308.9 281 54.4
AUR62001852 Chenopodium quinoa HOM05D006681 ORTHO05D008338 5.9e-82 308.5 282 54.6
Sp5g15430 Schrenkiella parvula HOM05D006681 ORTHO05D008338 5.9e-82 308.5 296 52.7
Lalb_Chr03g0026931 Lupinus albus HOM05D006681 ORTHO05D008338 7.7e-82 308.1 280 54.3
Phvul.011G069100 Phaseolus vulgaris HOM05D006681 ORTHO05D008338 2.2e-81 306.6 303 52.1
C03p70520 Brassica napus HOM05D006681 ORTHO05D008338 8.5e-81 304.7 281 53.7
BolC3t19336H Brassica oleracea HOM05D006681 ORTHO05D008338 8.5e-81 304.7 281 53.7
DCAR_006014 Daucus carota HOM05D006681 ORTHO05D008338 5.5e-80 302.0 289 51.2
ClCG02G020630 Citrullus lanatus HOM05D006681 ORTHO05D008338 2.7e-79 299.7 333 45.3
FAN21G0481 Fragaria x ananassa HOM05D006681 ORTHO05D008338 6.1e-79 298.5 306 50.3
Rhsim13G0088300 Rhododendron simsii HOM05D006681 ORTHO05D008338 6.1e-79 298.5 282 52.1
Carub.0003s2829 Capsella rubella HOM05D006681 ORTHO05D008338 6.8e-78 295.0 283 52.3
SGA_v2.0_scaffold134G34764 Striga asiatica HOM05D006681 ORTHO05D008338 1.2e-77 294.3 260 55.4
Aa31LG4G15300 Aethionema arabicum HOM05D006681 ORTHO05D008338 2.4e-75 286.6 358 43.6
Glyma.12G075000 Glycine max HOM05D006681 ORTHO05D008338 2.4e-75 286.6 283 50.9
Manes.11G136100 Manihot esculenta HOM05D006681 ORTHO05D008338 9.1e-75 284.6 286 51.7
Nitab4.5_0002684g0160 Nicotiana tabacum HOM05D006681 ORTHO05D008338 3.5e-74 282.7 286 50.7
Ah.08g214980 Amaranthus hybridus HOM05D006681 ORTHO05D008338 1.2e-71 274.2 282 50.0
Thhalv10002633m.g Eutrema salsugineum HOM05D006681 ORTHO05D008338 2.1e-71 273.5 285 50.5
FAN25G3219 Fragaria x ananassa HOM05D006681 ORTHO05D008338 4.0e-70 269.2 281 50.2
Lj1A175T11 Lonicera japonica HOM05D006681 ORTHO05D008338 3.4e-69 266.2 280 47.9
CBR_g415 Chara braunii HOM05D006681 ORTHO05D008338 4.8e-68 262.3 342 41.8
vmacro03125 Vaccinium macrocarpon HOM05D006681 ORTHO05D008338 1.8e-67 260.4 282 47.5
AUR62009646 Chenopodium quinoa HOM05D006681 ORTHO05D008338 2.7e-66 256.5 282 46.1
Lj3g0011020 Lotus japonicus HOM05D006681 ORTHO05D008338 6.6e-65 251.9 223 56.5
Dinv32860 Davidia involucrata HOM05D006681 ORTHO05D008338 2.1e-63 246.9 220 54.1
Nitab4.5_0002684g0190 Nicotiana tabacum HOM05D006681 ORTHO05D008338 2.3e-62 243.4 256 49.2
Nitab4.5_0001953g0020 Nicotiana tabacum HOM05D006681 ORTHO05D008338 8.9e-62 241.5 245 49.4
Cpa.g.sc2126.1 Carica papaya HOM05D006681 ORTHO05D008338 6.3e-60 235.3 215 52.6
MELO3C013668.2 Cucumis melo HOM05D006681 ORTHO05D008338 2.4e-59 233.4 264 44.3
Duzib168G1095 Durio zibethinus HOM05D006681 ORTHO05D008338 1.2e-58 231.1 284 44.0
SEGI_27570 Sequoiadendron giganteum HOM05D006681 ORTHO05D008338 2.8e-55 219.9 195 54.4
Hund05017 Selenicereus undatus HOM05D006681 ORTHO05D008338 1.0e-54 218.0 283 41.7
Sc06g0008190 Simmondsia chinensis HOM05D006681 ORTHO05D008338 1.7e-52 210.7 175 54.9
Haze_24007 Corylus avellana HOM05D006681 ORTHO05D008338 7.0e-51 205.3 452 32.7
AL1G56400 Arabidopsis lyrata HOM05D006681 ORTHO05D008338 1.2e-50 204.5 187 55.1
ATR0759G055 Amborella trichopoda HOM05D006681 ORTHO05D008338 1.5e-48 197.6 179 53.6
Nitab4.5_0001953g0050 Nicotiana tabacum HOM05D006681 ORTHO05D008338 1.5e-45 187.6 281 37.7
PRCOL_00001211 Prasinoderma coloniale HOM05D006681 ORTHO05D008338 5.2e-30 136.0 445 27.6
Sc06g0008200 Simmondsia chinensis HOM05D006681 ORTHO05D008338 3.9e-25 119.8 103 53.4
Nitab4.5_0000766g0030 Nicotiana tabacum HOM05D006681 ORTHO05D008338 5.6e-24 115.9 143 44.1
MCO11G760 Micromonas commoda HOM05D006681 ORTHO05D008338 7.3e-24 115.5 247 30.0
Glyma.11G145018 Glycine max HOM05D006681 ORTHO05D008338 6.2e-23 112.5 106 50.9
CAN.G1289.2 Capsicum annuum HOM05D006681 ORTHO05D008338 5.6e-16 89.4 199 31.2
MD03G1102800 Malus domestica HOM05D006681 ORTHO05D008338 3.6e-15 86.7 72 58.3
CDE08G1356 Ceratophyllum demersum HOM05D006681 ORTHO05D008338 4.2e-11 73.2 64 48.4
Actinidia20468 Actinidia chinensis HOM05D006681 ORTHO05D008338 2.5e-08 63.9 61 49.2
Nitab4.5_0001068g0110 Nicotiana tabacum HOM05D006681 ORTHO05D008338 4.3e-08 63.2 48 60.4


User provided reference genes

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