Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 3.1e-276 954.5 490 100.0
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.4e-175 620.2 496 66.9
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 2.6e-105 386.7 510 43.7
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.3e-85 321.2 317 50.2
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.8e-85 320.9 313 50.8
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.9e-76 290.8 310 49.7
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.5e-71 273.9 340 45.9
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.2e-71 273.1 300 48.0
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 5.1e-69 266.2 492 38.2
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 1.1e-68 265.0 461 36.2
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 3.1e-66 256.9 394 39.6
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 2.0e-65 254.2 369 39.8
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.6e-62 244.6 466 37.8
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 6.1e-62 242.7 468 37.2
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 1.4e-61 241.5 395 38.7
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 2.3e-61 240.7 368 40.2
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.9e-61 240.0 382 38.2
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.9e-61 240.0 382 38.2
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 3.9e-61 240.0 371 37.5
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 6.7e-61 239.2 367 39.8
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.1e-60 238.4 383 39.2
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.5e-60 238.0 394 36.0
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 2.5e-60 237.3 394 38.3
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.3e-60 236.5 390 38.2
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 5.7e-60 236.1 460 35.4
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 5.7e-60 236.1 362 39.8
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 5.7e-60 236.1 382 39.8
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 5.7e-60 236.1 400 38.0
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 7.4e-60 235.7 472 34.3
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.3e-59 235.0 390 37.9
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 1.7e-59 234.6 367 39.8
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.8e-59 233.8 507 34.5
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 4.8e-59 233.0 472 35.8
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 4.8e-59 233.0 401 36.9
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.4e-58 231.5 402 38.3
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 5.3e-58 229.6 468 35.3
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 6.9e-58 229.2 507 34.7
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.2e-57 228.4 313 44.1
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.2e-57 228.4 388 37.6
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 1.5e-57 228.0 380 38.2
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 1.5e-57 228.0 460 35.9
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 1.5e-57 228.0 458 35.4
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.0e-57 227.6 434 35.5
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 2.0e-57 227.6 472 35.2
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 2.6e-57 227.3 394 38.6
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 4.5e-57 226.5 467 34.0
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 4.5e-57 226.5 309 42.4
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 4.5e-57 226.5 464 36.2
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 5.9e-57 226.1 462 35.1
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 7.7e-57 225.7 314 42.7
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 7.7e-57 225.7 312 44.2
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 1.0e-56 225.3 376 36.7
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 1.3e-56 224.9 460 34.8
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.3e-56 224.9 376 38.0
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.7e-56 224.6 464 34.7
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 2.2e-56 224.2 314 42.4
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 3.8e-56 223.4 465 36.1
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 5.0e-56 223.0 395 37.0
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 5.0e-56 223.0 351 39.6
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 5.0e-56 223.0 383 39.7
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 6.5e-56 222.6 475 34.7
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 6.5e-56 222.6 311 42.4
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 8.5e-56 222.2 365 37.0
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.1e-55 221.9 454 36.3
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 1.1e-55 221.9 418 36.6
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.9e-55 221.1 405 34.8
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 2.5e-55 220.7 497 32.8
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 3.2e-55 220.3 375 36.5
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 4.2e-55 219.9 467 35.1
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 5.5e-55 219.5 471 35.7
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 7.2e-55 219.2 309 43.4
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 7.2e-55 219.2 405 34.1
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 7.2e-55 219.2 312 40.7
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 9.4e-55 218.8 375 36.5
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 9.4e-55 218.8 483 35.2
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.2e-54 218.4 309 41.1
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 1.6e-54 218.0 399 36.3
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.6e-54 218.0 401 36.7
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.6e-54 218.0 307 41.7
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 2.1e-54 217.6 414 37.0
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.7e-54 217.2 399 36.1
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 2.7e-54 217.2 460 35.0
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 3.6e-54 216.9 399 36.3
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 4.7e-54 216.5 490 35.1
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 6.1e-54 216.1 454 35.9
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 7.9e-54 215.7 306 42.2
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.0e-53 215.3 311 42.4
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.4e-53 214.9 435 34.7
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.8e-53 214.5 433 33.9
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.8e-53 214.5 498 34.3
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 2.3e-53 214.2 370 37.6
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 3.0e-53 213.8 456 35.7
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 3.0e-53 213.8 402 34.3
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 3.9e-53 213.4 456 35.7
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 8.8e-53 212.2 451 32.8
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 2.6e-52 210.7 471 33.8
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 3.3e-52 210.3 373 36.5
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 4.4e-52 209.9 304 39.1
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 4.4e-52 209.9 342 37.7
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 4.4e-52 209.9 467 35.1
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 4.4e-52 209.9 464 35.1
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 5.7e-52 209.5 390 35.9
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 7.4e-52 209.1 308 38.0
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 9.7e-52 208.8 398 36.7
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.3e-51 208.4 400 36.2
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.7e-51 208.0 314 39.2
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 1.7e-51 208.0 307 41.0
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.7e-51 208.0 499 33.1
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.7e-51 208.0 391 35.0
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.8e-51 207.2 390 35.9
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 3.7e-51 206.8 460 35.2
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 3.7e-51 206.8 464 33.4
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 6.3e-51 206.1 403 34.7
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 6.3e-51 206.1 311 40.5
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 6.3e-51 206.1 314 40.4
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 8.2e-51 205.7 395 34.7
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 8.2e-51 205.7 307 39.4
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 1.1e-50 205.3 451 32.8
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 1.8e-50 204.5 394 35.0
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 4.1e-50 203.4 393 35.6
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 5.3e-50 203.0 446 32.3
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.3e-50 203.0 447 32.7
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.2e-49 201.8 494 32.2
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 2.6e-49 200.7 499 32.5
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 3.5e-49 200.3 466 33.5
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 5.9e-49 199.5 442 32.8
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 3.8e-48 196.8 411 34.8
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 3.8e-48 196.8 306 38.2
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.5e-47 194.9 411 34.1
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 1.9e-47 194.5 369 36.6
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 2.5e-47 194.1 290 40.0
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 3.2e-47 193.7 464 31.9
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 4.2e-47 193.4 309 37.9
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 4.2e-47 193.4 436 33.7
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 5.5e-47 193.0 299 38.1
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 9.4e-47 192.2 335 37.0
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 1.0e-45 188.7 215 49.3
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 8.8e-45 185.7 242 47.1
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.1e-44 185.3 308 38.0
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 1.1e-44 185.3 312 37.2
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 1.1e-44 185.3 522 30.1
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 2.2e-43 181.0 549 28.2
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 5.3e-42 176.4 486 29.2
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.0e-40 172.2 436 31.0
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 1.3e-40 171.8 263 36.9
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 1.4e-37 161.8 322 33.2
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 6.8e-37 159.5 378 33.3
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 1.2e-36 158.7 305 35.1
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.7e-32 144.8 291 33.0
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 2.2e-32 144.4 312 32.7
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 5.0e-32 143.3 322 32.9
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 6.5e-32 142.9 133 54.1
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 8.5e-32 142.5 393 31.0
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 8.5e-32 142.5 370 31.6
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 8.5e-32 142.5 204 43.1
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 1.6e-30 138.3 204 42.6
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.2e-27 127.9 253 33.6
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 2.8e-27 127.5 280 32.5
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 4.9e-27 126.7 253 36.4
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 8.3e-27 125.9 208 39.4
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 1.4e-26 125.2 252 32.9
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 3.8e-24 117.1 203 37.9
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 4.3e-23 113.6 141 44.7
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 6.8e-21 106.3 434 25.6
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 8.9e-21 105.9 212 37.3
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 7.0e-18 96.3 231 32.9
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 3.0e-16 90.9 235 31.9
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.5e-15 88.6 201 32.8
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 1.6e-14 85.1 366 24.0
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 6.8e-13 79.7 99 43.4
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 6.8e-13 79.7 96 46.9
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 7.0e-10 69.7 138 32.6
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 7.8e-09 66.2 70 48.6
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 8.1e-06 56.2 56 55.4


User provided reference genes

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