Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_22430 Physcomitrium patens HOM05D003691 ORTHO05D004288 0.0e+00 1356.7 689 100.0
Pp3c7_4280 Physcomitrium patens HOM05D003691 ORTHO05D004288 2.4e-245 852.4 700 66.7
Mapoly0002s0133 Marchantia polymorpha HOM05D003691 ORTHO05D004288 7.3e-138 495.4 709 43.3
AagrBONN_evm.TU.Sc2ySwM_228.2537 Anthoceros agrestis HOM05D003691 ORTHO05D004288 2.2e-126 457.2 715 42.4
Hma1.2p1_0895F.1_g233770 Hydrangea macrophylla HOM05D003691 ORTHO05D004288 4.2e-125 453.0 694 43.9
CARHR126440 Cardamine hirsuta HOM05D003691 ORTHO05D004288 5.1e-123 446.0 697 41.5
Thhalv10016359m.g Eutrema salsugineum HOM05D003691 ORTHO05D004288 8.7e-123 445.3 693 41.7
BolC4t23260H Brassica oleracea HOM05D003691 ORTHO05D004288 1.9e-122 444.1 696 41.2
MBI07_g01730_MAGBIO Magnolia biondii HOM05D003691 ORTHO05D004288 5.6e-122 442.6 691 42.1
SalBow7G1078 Salvia bowleyana HOM05D003691 ORTHO05D004288 9.6e-122 441.8 712 41.4
C04p17080 Brassica napus HOM05D003691 ORTHO05D004288 1.3e-121 441.4 690 41.3
BraA05t20270Z Brassica rapa HOM05D003691 ORTHO05D004288 1.6e-121 441.0 694 40.8
A05p13290 Brassica napus HOM05D003691 ORTHO05D004288 2.1e-121 440.7 694 40.8
AT2G32590 Arabidopsis thaliana HOM05D003691 ORTHO05D004288 2.8e-121 440.3 695 40.0
BraA04t18015Z Brassica rapa HOM05D003691 ORTHO05D004288 3.6e-121 439.9 693 40.3
ATR0317G123 Amborella trichopoda HOM05D003691 ORTHO05D004288 4.8e-121 439.5 696 40.7
Manes.04G099700 Manihot esculenta HOM05D003691 ORTHO05D004288 8.1e-121 438.7 687 42.8
Carub.0004s1392 Capsella rubella HOM05D003691 ORTHO05D004288 1.8e-120 437.6 690 40.1
Sp4g14920 Schrenkiella parvula HOM05D003691 ORTHO05D004288 1.8e-120 437.6 696 41.7
A04p25040 Brassica napus HOM05D003691 ORTHO05D004288 2.4e-120 437.2 693 40.3
Nn1g03443 Nelumbo nucifera HOM05D003691 ORTHO05D004288 2.6e-119 433.7 694 42.2
Dinv39731 Davidia involucrata HOM05D003691 ORTHO05D004288 3.4e-119 433.3 692 43.2
AL4G27990 Arabidopsis lyrata HOM05D003691 ORTHO05D004288 5.8e-119 432.6 695 40.3
TAR624G0007 Trochodendron aralioides HOM05D003691 ORTHO05D004288 9.9e-119 431.8 700 42.3
PGR042G1566 Punica granatum HOM05D003691 ORTHO05D004288 1.3e-118 431.4 683 42.8
Aqoxy1G03453 Aquilegia oxysepala HOM05D003691 ORTHO05D004288 1.7e-118 431.0 713 41.7
FAN05G1959 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.9e-118 430.3 695 42.2
Lalb_Chr03g0028581 Lupinus albus HOM05D003691 ORTHO05D004288 3.8e-118 429.9 699 40.6
FAN09G0430 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.9e-117 427.6 696 42.7
FAN14G5114 Fragaria x ananassa HOM05D003691 ORTHO05D004288 4.2e-117 426.4 695 42.0
AUR62015833 Chenopodium quinoa HOM05D003691 ORTHO05D004288 7.1e-117 425.6 705 40.1
arahy.Tifrunner.gnm1.ann1.AS5DTW Arachis hypogaea HOM05D003691 ORTHO05D004288 9.3e-117 425.2 698 42.1
MSTRG.14857 Avicennia marina HOM05D003691 ORTHO05D004288 2.1e-116 424.1 684 41.5
Migut.M00432 Erythranthe guttata HOM05D003691 ORTHO05D004288 2.1e-116 424.1 671 43.1
Medtr4g050060 Medicago truncatula HOM05D003691 ORTHO05D004288 4.6e-116 422.9 692 40.6
SGA_v2.0_scaffold70G23393 Striga asiatica HOM05D003691 ORTHO05D004288 4.6e-116 422.9 672 42.9
arahy.Tifrunner.gnm1.ann1.4D79G7 Arachis hypogaea HOM05D003691 ORTHO05D004288 7.9e-116 422.2 696 41.8
Lj3g0007999 Lotus japonicus HOM05D003691 ORTHO05D004288 7.9e-116 422.2 689 41.7
QL08p006881 Quercus lobata HOM05D003691 ORTHO05D004288 7.9e-116 422.2 690 41.3
Solyc07g049680.4 Solanum lycopersicum HOM05D003691 ORTHO05D004288 7.9e-116 422.2 677 41.7
Dinv08745 Davidia involucrata HOM05D003691 ORTHO05D004288 1.0e-115 421.8 694 42.1
TPR.G4630 Trifolium pratense HOM05D003691 ORTHO05D004288 1.0e-115 421.8 702 41.0
MD09G1071300 Malus domestica HOM05D003691 ORTHO05D004288 2.3e-115 420.6 694 41.8
Sopen07g025100 Solanum pennellii HOM05D003691 ORTHO05D004288 2.3e-115 420.6 677 41.5
Atru.chr2.3500 Acer truncatum HOM05D003691 ORTHO05D004288 3.9e-115 419.9 691 40.2
Duzib138G0684 Durio zibethinus HOM05D003691 ORTHO05D004288 5.1e-115 419.5 707 42.1
Potri.014G155900 Populus trichocarpa HOM05D003691 ORTHO05D004288 5.1e-115 419.5 688 42.4
TWI36G1355 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 6.7e-115 419.1 695 40.3
Thecc.01G178100 Theobroma cacao HOM05D003691 ORTHO05D004288 8.7e-115 418.7 696 41.5
FvH4_6g42730 Fragaria vesca HOM05D003691 ORTHO05D004288 1.5e-114 417.9 705 41.6
Haze_12800 Corylus avellana HOM05D003691 ORTHO05D004288 1.9e-114 417.5 697 42.5
RcHm_v2.0_Chr2g0158621 Rosa chinensis HOM05D003691 ORTHO05D004288 1.9e-114 417.5 695 41.7
Sabra14G0117900 Salix brachista HOM05D003691 ORTHO05D004288 2.5e-114 417.2 690 41.7
VMungo1127G0496 Vigna mungo HOM05D003691 ORTHO05D004288 2.5e-114 417.2 687 40.3
Gohir.A07G081900 Gossypium hirsutum HOM05D003691 ORTHO05D004288 4.3e-114 416.4 700 41.1
PSO210G5093 Papaver somniferum HOM05D003691 ORTHO05D004288 5.6e-114 416.0 694 40.3
Duzib211G0477 Durio zibethinus HOM05D003691 ORTHO05D004288 9.6e-114 415.2 693 41.4
Gohir.D07G088400 Gossypium hirsutum HOM05D003691 ORTHO05D004288 9.6e-114 415.2 695 41.0
Gorai.001G094600 Gossypium raimondii HOM05D003691 ORTHO05D004288 1.3e-113 414.8 700 40.7
Lsat_1_v5_gn_7_93200 Lactuca sativa HOM05D003691 ORTHO05D004288 1.3e-113 414.8 687 39.9
GSVIVG01030475001 Vitis vinifera HOM05D003691 ORTHO05D004288 1.6e-113 414.5 696 41.2
CiPaw.03G157800 Carya illinoinensis HOM05D003691 ORTHO05D004288 2.1e-113 414.1 685 41.9
Atru.chr6.3228 Acer truncatum HOM05D003691 ORTHO05D004288 2.8e-113 413.7 687 40.8
DCAR_019753 Daucus carota HOM05D003691 ORTHO05D004288 2.8e-113 413.7 644 42.4
Prupe.4G220400 Prunus persica HOM05D003691 ORTHO05D004288 3.7e-113 413.3 692 41.0
PGSC0003DMG400001077 Solanum tuberosum HOM05D003691 ORTHO05D004288 3.7e-113 413.3 677 41.4
TWI75G0495 Tripterygium wilfordii HOM05D003691 ORTHO05D004288 4.8e-113 412.9 694 41.1
EL10Ac4g07751 Beta vulgaris HOM05D003691 ORTHO05D004288 6.2e-113 412.5 701 39.7
Ciclev10014542m.g Citrus clementina HOM05D003691 ORTHO05D004288 6.2e-113 412.5 708 42.2
Prupe.3G213700 Prunus persica HOM05D003691 ORTHO05D004288 1.1e-112 411.8 691 41.5
MELO3C019300.2 Cucumis melo HOM05D003691 ORTHO05D004288 1.4e-112 411.4 697 41.3
Oeu027232.1 Olea europaea HOM05D003691 ORTHO05D004288 2.4e-112 410.6 681 40.7
Nitab4.5_0015742g0010 Nicotiana tabacum HOM05D003691 ORTHO05D004288 4.0e-112 409.8 679 40.8
Sc12g0002210 Simmondsia chinensis HOM05D003691 ORTHO05D004288 4.0e-112 409.8 684 41.5
CANSAT64G0165 Cannabis sativa HOM05D003691 ORTHO05D004288 6.9e-112 409.1 694 40.6
HanXRQChr04g0126971 Helianthus annuus HOM05D003691 ORTHO05D004288 6.9e-112 409.1 705 39.9
Phvul.011G101300 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 6.9e-112 409.1 688 39.5
Psat7g203760 Pisum sativum HOM05D003691 ORTHO05D004288 6.9e-112 409.1 701 40.4
Glyma.12G096700 Glycine max HOM05D003691 ORTHO05D004288 4.5e-111 406.4 689 40.8
Glyma.06G308100 Glycine max HOM05D003691 ORTHO05D004288 7.6e-111 405.6 685 40.4
Sed0022442 Sechium edule HOM05D003691 ORTHO05D004288 9.9e-111 405.2 698 41.3
ClCG02G009060 Citrullus lanatus HOM05D003691 ORTHO05D004288 1.3e-110 404.8 699 40.8
CsaV3_2G034670 Cucumis sativus L. HOM05D003691 ORTHO05D004288 1.3e-110 404.8 703 40.8
FAN02G0990 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.7e-110 404.4 695 41.6
Rhsim04G0052200 Rhododendron simsii HOM05D003691 ORTHO05D004288 2.2e-110 404.1 640 43.1
Nitab4.5_0000130g0240 Nicotiana tabacum HOM05D003691 ORTHO05D004288 3.8e-110 403.3 676 40.7
Cfa020301 Carpinus fangiana HOM05D003691 ORTHO05D004288 8.4e-110 402.1 703 39.0
THA.LOC104816038 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.1e-109 401.7 679 39.9
vmacro09345 Vaccinium macrocarpon HOM05D003691 ORTHO05D004288 1.1e-109 401.7 643 42.8
Aa31LG5G4740 Aethionema arabicum HOM05D003691 ORTHO05D004288 4.2e-109 399.8 693 39.0
ECA240G1119 Erigeron canadensis HOM05D003691 ORTHO05D004288 7.1e-109 399.1 675 41.2
Cc05_g03670 Coffea canephora HOM05D003691 ORTHO05D004288 9.3e-109 398.7 724 38.3
QL08p031532 Quercus lobata HOM05D003691 ORTHO05D004288 9.3e-109 398.7 696 40.8
Eucgr.A01107 Eucalyptus grandis HOM05D003691 ORTHO05D004288 1.2e-108 398.3 692 41.2
CAN.G290.10 Capsicum annuum HOM05D003691 ORTHO05D004288 4.6e-108 396.4 630 42.4
Hund02023 Selenicereus undatus HOM05D003691 ORTHO05D004288 6.0e-108 396.0 721 38.3
DCAR_021155 Daucus carota HOM05D003691 ORTHO05D004288 7.9e-108 395.6 688 39.4
Lsat_1_v5_gn_9_106740 Lactuca sativa HOM05D003691 ORTHO05D004288 1.8e-107 394.4 692 40.5
VMungo1080G0849 Vigna mungo HOM05D003691 ORTHO05D004288 2.3e-107 394.0 695 39.6
HPP92_023149 Vanilla planifolia HOM05D003691 ORTHO05D004288 1.1e-106 391.7 696 38.8
Ah.06g182530 Amaranthus hybridus HOM05D003691 ORTHO05D004288 1.5e-106 391.3 697 39.7
ECA236G1051 Erigeron canadensis HOM05D003691 ORTHO05D004288 2.5e-106 390.6 717 39.6
SEGI_37895 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 1.6e-105 387.9 597 42.9
Medtr2g087880 Medicago truncatula HOM05D003691 ORTHO05D004288 5.3e-104 382.9 695 38.4
Thecc.07G031000 Theobroma cacao HOM05D003691 ORTHO05D004288 6.9e-104 382.5 695 38.8
Zm00001eb162990 Zea mays HOM05D003691 ORTHO05D004288 1.5e-103 381.3 699 39.1
CBR_g26183 Chara braunii HOM05D003691 ORTHO05D004288 2.0e-103 380.9 796 36.7
Ca_19493_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 4.5e-103 379.8 693 37.2
Lj8A127T48 Lonicera japonica HOM05D003691 ORTHO05D004288 7.6e-103 379.0 615 41.5
FvH4_3g23280 Fragaria vesca HOM05D003691 ORTHO05D004288 2.2e-102 377.5 698 39.0
RcHm_v2.0_Chr5g0041001 Rosa chinensis HOM05D003691 ORTHO05D004288 3.8e-102 376.7 692 38.9
THA.LOC104826143 Tarenaya hassleriana HOM05D003691 ORTHO05D004288 1.4e-101 374.8 699 38.8
Phvul.005G116900 Phaseolus vulgaris HOM05D003691 ORTHO05D004288 4.2e-101 373.2 701 38.4
Glyma.12G191300 Glycine max HOM05D003691 ORTHO05D004288 6.0e-100 369.4 695 39.0
TAR626G1388 Trochodendron aralioides HOM05D003691 ORTHO05D004288 2.3e-99 367.5 626 41.5
SEGI_30766 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 6.7e-99 365.9 650 39.2
Ciclev10007620m.g Citrus clementina HOM05D003691 ORTHO05D004288 3.3e-98 363.6 723 37.2
MD11G1212100 Malus domestica HOM05D003691 ORTHO05D004288 4.3e-98 363.2 673 36.8
LjContig00274_ERROPOS1100000g0006521 Lotus japonicus HOM05D003691 ORTHO05D004288 1.6e-97 361.3 624 40.2
TPR.G4243 Trifolium pratense HOM05D003691 ORTHO05D004288 2.8e-97 360.5 693 38.4
Psat5g261240 Pisum sativum HOM05D003691 ORTHO05D004288 1.2e-95 355.1 702 38.2
BcaB06g28606 Brassica carinata HOM05D003691 ORTHO05D004288 2.6e-95 354.0 617 40.0
Hund02022 Selenicereus undatus HOM05D003691 ORTHO05D004288 1.1e-93 348.6 698 36.0
FAN21G2044 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.9e-93 347.8 688 39.2
Peaxi162Scf00007g00129 Petunia axillaris HOM05D003691 ORTHO05D004288 3.6e-92 343.6 677 38.3
Ca_01616_v3 Cicer arietinum L. HOM05D003691 ORTHO05D004288 7.9e-92 342.4 721 37.0
Haze_09719 Corylus avellana HOM05D003691 ORTHO05D004288 7.4e-90 335.9 751 36.1
BcaB02g10460 Brassica carinata HOM05D003691 ORTHO05D004288 2.4e-88 330.9 521 39.7
Hund02025 Selenicereus undatus HOM05D003691 ORTHO05D004288 2.4e-88 330.9 699 35.2
GSVIVG01037701001 Vitis vinifera HOM05D003691 ORTHO05D004288 4.1e-88 330.1 677 36.9
BcaB06g28605 Brassica carinata HOM05D003691 ORTHO05D004288 5.3e-88 329.7 638 36.8
AUR62020387 Chenopodium quinoa HOM05D003691 ORTHO05D004288 2.0e-87 327.8 701 36.5
FAN11G2344 Fragaria x ananassa HOM05D003691 ORTHO05D004288 2.6e-87 327.4 622 38.7
MCO04G245 Micromonas commoda HOM05D003691 ORTHO05D004288 9.4e-85 318.9 655 37.4
Cpa.g.sc87.104 Carica papaya HOM05D003691 ORTHO05D004288 2.3e-83 314.3 542 40.2
CiPaw.11G193000 Carya illinoinensis HOM05D003691 ORTHO05D004288 2.3e-83 314.3 528 40.3
unitig_60.g25819 Utricularia gibba HOM05D003691 ORTHO05D004288 4.4e-82 310.1 672 36.6
BolC4t27689H Brassica oleracea HOM05D003691 ORTHO05D004288 1.8e-80 304.7 555 37.7
Dinv22243 Davidia involucrata HOM05D003691 ORTHO05D004288 1.2e-79 302.0 547 37.5
C04p62100 Brassica napus HOM05D003691 ORTHO05D004288 8.5e-78 295.8 468 40.4
AUR62015832 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.3e-73 282.0 643 35.0
COL.COLO4_09704 Corchorus olitorius HOM05D003691 ORTHO05D004288 3.8e-70 270.4 528 39.0
CSS0013476 Camellia sinensis var. sinensis HOM05D003691 ORTHO05D004288 1.5e-69 268.5 531 37.5
PRCOL_00002032 Prasinoderma coloniale HOM05D003691 ORTHO05D004288 4.7e-68 263.5 630 33.7
AUR62020385 Chenopodium quinoa HOM05D003691 ORTHO05D004288 1.4e-67 261.9 300 49.3
BcaC02g07908 Brassica carinata HOM05D003691 ORTHO05D004288 7.7e-63 246.1 676 30.6
Actinidia10811 Actinidia chinensis HOM05D003691 ORTHO05D004288 5.0e-62 243.4 462 39.2
Oeu036739.1 Olea europaea HOM05D003691 ORTHO05D004288 8.5e-62 242.7 251 53.0
Lalb_Chr19g0136071 Lupinus albus HOM05D003691 ORTHO05D004288 2.1e-60 238.0 331 45.6
Gohir.A07G186000 Gossypium hirsutum HOM05D003691 ORTHO05D004288 5.2e-59 233.4 462 38.5
FAN25G2100 Fragaria x ananassa HOM05D003691 ORTHO05D004288 6.8e-59 233.0 292 48.3
Lj8A171G44 Lonicera japonica HOM05D003691 ORTHO05D004288 1.5e-53 215.3 518 33.2
Cfa026695 Carpinus fangiana HOM05D003691 ORTHO05D004288 9.2e-48 196.1 731 28.3
Lalb_Chr19g0136061 Lupinus albus HOM05D003691 ORTHO05D004288 1.2e-42 179.1 280 40.7
Os01g0532800 Oryza sativa ssp. japonica HOM05D003691 ORTHO05D004288 4.9e-41 173.7 319 36.1
MD03G1195700 Malus domestica HOM05D003691 ORTHO05D004288 7.0e-40 169.9 439 30.3
MD17G1101300 Malus domestica HOM05D003691 ORTHO05D004288 3.5e-39 167.5 251 44.6
FAN25G2879 Fragaria x ananassa HOM05D003691 ORTHO05D004288 1.7e-33 148.7 335 34.6
CDE09G1127 Ceratophyllum demersum HOM05D003691 ORTHO05D004288 8.3e-33 146.4 142 54.2
SHI10368 Sapria himalayana HOM05D003691 ORTHO05D004288 1.0e-30 139.4 425 32.2
SEGI_16706 Sequoiadendron giganteum HOM05D003691 ORTHO05D017750 3.9e-22 110.9 101 53.5
SEGI_15855 Sequoiadendron giganteum HOM05D003691 ORTHO05D004288 5.6e-21 107.1 95 54.7
Lj8A171G43 Lonicera japonica HOM05D003691 ORTHO05D004288 4.7e-20 104.0 157 40.8
Actinidia10812 Actinidia chinensis HOM05D003691 ORTHO05D004288 2.0e-18 98.6 224 33.9
MD03G1195600 Malus domestica HOM05D003691 ORTHO05D004288 1.9e-16 92.0 140 42.1
Sed0010458 Sechium edule HOM05D003691 ORTHO05D004288 7.1e-16 90.1 251 27.5
C04p62090 Brassica napus HOM05D003691 ORTHO05D004288 1.2e-15 89.4 131 41.2
CAN.G574.39 Capsicum annuum HOM05D003691 ORTHO05D004288 1.2e-15 89.4 130 40.8
arahy.Tifrunner.gnm1.ann1.NAA2I0 Arachis hypogaea HOM05D003691 ORTHO05D004288 2.7e-15 88.2 61 68.9
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 5.6e-13 80.5 81 48.1
CAN.G574.40 Capsicum annuum HOM05D003691 ORTHO05D004288 8.1e-12 76.6 57 59.6
EL10Ac4g08622 Beta vulgaris HOM05D003691 ORTHO05D019836 5.8e-10 70.5 63 55.6
Pp3c13_11458 Physcomitrium patens HOM05D003691 ORTHO05D317212 1.4e-08 65.9 50 78.0
SHI10370 Sapria himalayana HOM05D000105 ORTHO05D000023 7.1e-08 63.5 47 66.0
ATR0772G025 Amborella trichopoda HOM05D003691 ORTHO05D004288 1.3e-06 59.3 92 33.7
Glyma.13G310451 Glycine max HOM05D003691 ORTHO05D004288 5.1e-06 57.4 50 58.0


User provided reference genes

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