Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_22260 Physcomitrium patens HOM05D050098 ORTHO05D002412 5.0e-304 1047.0 528 100.0
Pp3c7_4510 Physcomitrium patens HOM05D050098 ORTHO05D002412 7.8e-156 554.7 536 59.1
Mapoly0038s0032 Marchantia polymorpha HOM05D002337 ORTHO05D002412 1.9e-13 81.6 543 26.5
TWI53G1567 Tripterygium wilfordii HOM05D002337 ORTHO05D002412 5.4e-08 63.5 69 49.3
SEGI_37463 Sequoiadendron giganteum HOM05D002337 ORTHO05D002412 1.6e-07 62.0 60 55.0
ClCG04G008580 Citrullus lanatus HOM05D002337 ORTHO05D002412 2.7e-07 61.2 140 34.3
Lj2C103T3 Lonicera japonica HOM05D002337 ORTHO05D002412 2.7e-07 61.2 57 57.9
RcHm_v2.0_Chr7g0221341 Rosa chinensis HOM05D002337 ORTHO05D002412 2.7e-07 61.2 58 60.3
EL10Ac2g03480 Beta vulgaris HOM05D002337 ORTHO05D002412 3.5e-07 60.8 61 55.7
FvH4_7g20880 Fragaria vesca HOM05D002337 ORTHO05D002412 4.6e-07 60.5 58 60.3
FAN01G2855 Fragaria x ananassa HOM05D002337 ORTHO05D002412 4.6e-07 60.5 58 60.3
FAN03G0281 Fragaria x ananassa HOM05D002337 ORTHO05D002412 4.6e-07 60.5 58 60.3
FAN06G1636 Fragaria x ananassa HOM05D002337 ORTHO05D002412 4.6e-07 60.5 58 60.3
FAN06G1669 Fragaria x ananassa HOM05D002337 ORTHO05D002412 4.6e-07 60.5 58 60.3
FAN10G2584 Fragaria x ananassa HOM05D002337 ORTHO05D002412 4.6e-07 60.5 58 60.3
PSO384G2060 Papaver somniferum HOM05D002337 ORTHO05D002412 4.6e-07 60.5 63 52.4
Aa31LG5G22720 Aethionema arabicum HOM05D002337 ORTHO05D002412 6.0e-07 60.1 57 63.2
Psat6g238280 Pisum sativum HOM05D002337 ORTHO05D002412 6.0e-07 60.1 65 50.8
BcaB02g09285 Brassica carinata HOM05D002337 ORTHO05D002412 7.9e-07 59.7 51 64.7
Duzib093G0383 Durio zibethinus HOM05D002337 ORTHO05D002412 7.9e-07 59.7 58 55.2
Os05g0120900 Oryza sativa ssp. japonica HOM05D002337 ORTHO05D002412 7.9e-07 59.7 78 47.4
Sp4g19690 Schrenkiella parvula HOM05D002337 ORTHO05D002412 7.9e-07 59.7 57 61.4
CSS0031665 Camellia sinensis var. sinensis HOM05D002337 ORTHO05D002412 1.0e-06 59.3 60 53.3
MD07G1186600 Malus domestica HOM05D002337 ORTHO05D002412 1.0e-06 59.3 58 56.9
PSO339G3544 Papaver somniferum HOM05D002337 ORTHO05D002412 1.0e-06 59.3 63 52.4
Zm00001eb289790 Zea mays HOM05D002337 ORTHO05D002412 1.0e-06 59.3 85 48.2
Aqoxy4G03075 Aquilegia oxysepala HOM05D002337 ORTHO05D002412 1.3e-06 58.9 62 53.2
AT2G37380 Arabidopsis thaliana HOM05D002337 ORTHO05D002412 1.3e-06 58.9 90 45.6
AUR62035982 Chenopodium quinoa HOM05D002337 ORTHO05D002412 1.3e-06 58.9 61 57.4
AUR62041630 Chenopodium quinoa HOM05D002337 ORTHO05D002412 1.3e-06 58.9 61 54.1
Lsat_1_v5_gn_2_111341 Lactuca sativa HOM05D002337 ORTHO05D002412 1.3e-06 58.9 87 44.8
Lsat_1_v5_gn_2_116281 Lactuca sativa HOM05D002337 ORTHO05D002412 1.3e-06 58.9 53 58.5
Medtr1g115605 Medicago truncatula HOM05D002337 ORTHO05D002412 1.3e-06 58.9 51 58.8
Prupe.2G225400 Prunus persica HOM05D002337 ORTHO05D002412 1.3e-06 58.9 58 58.6
PGR142G1446 Punica granatum HOM05D002337 ORTHO05D002412 1.3e-06 58.9 52 63.5
RcHm_v2.0_Chr1g0365131 Rosa chinensis HOM05D002337 ORTHO05D002412 1.3e-06 58.9 31 83.9
Sc20g0002380 Simmondsia chinensis HOM05D002337 ORTHO05D002412 1.3e-06 58.9 94 42.6
VMungo0720G2225 Vigna mungo HOM05D002337 ORTHO05D002412 1.3e-06 58.9 51 58.8
A05p08570 Brassica napus HOM05D002337 ORTHO05D002412 1.7e-06 58.5 57 61.4
C04p10660 Brassica napus HOM05D002337 ORTHO05D002412 1.7e-06 58.5 57 61.4
BolC4t22658H Brassica oleracea HOM05D002337 ORTHO05D002412 1.7e-06 58.5 57 61.4
BraA05t19825Z Brassica rapa HOM05D002337 ORTHO05D002412 1.7e-06 58.5 57 61.4
Dinv35665 Davidia involucrata HOM05D002337 ORTHO05D002412 1.7e-06 58.5 51 62.7
FvH4_6g14700 Fragaria vesca HOM05D002337 ORTHO05D002412 1.7e-06 58.5 57 54.4
RcHm_v2.0_Chr3g0467911 Rosa chinensis HOM05D002337 ORTHO05D002412 1.7e-06 58.5 57 54.4
AL4G33760 Arabidopsis lyrata HOM05D002337 ORTHO05D002412 2.3e-06 58.2 59 59.3
AL4G34370 Arabidopsis lyrata HOM05D002337 ORTHO05D002412 2.3e-06 58.2 59 59.3
CANSAT56G1162 Cannabis sativa HOM05D002337 ORTHO05D002412 2.3e-06 58.2 58 55.2
CANSAT56G3693 Cannabis sativa HOM05D002337 ORTHO05D002412 2.3e-06 58.2 58 55.2
ECA276G0006 Erigeron canadensis HOM05D002337 ORTHO05D002412 2.3e-06 58.2 95 40.0
FAN02G2305 Fragaria x ananassa HOM05D002337 ORTHO05D002412 2.3e-06 58.2 57 54.4
FAN05G2144 Fragaria x ananassa HOM05D002337 ORTHO05D002412 2.3e-06 58.2 57 54.4
FAN14G0500 Fragaria x ananassa HOM05D002337 ORTHO05D002412 2.3e-06 58.2 57 54.4
Oeu058315.1 Olea europaea HOM05D002337 ORTHO05D002412 2.3e-06 58.2 51 58.8
Oeu058316.1 Olea europaea HOM05D002317 ORTHO05D002420 2.3e-06 58.2 51 58.8
Rhsim03G0125800 Rhododendron simsii HOM05D002337 ORTHO05D002412 2.3e-06 58.2 51 58.8
RhsimUnG0167900 Rhododendron simsii HOM05D002337 ORTHO05D002412 2.3e-06 58.2 51 58.8
THA.LOC104805394 Tarenaya hassleriana HOM05D002337 ORTHO05D002412 2.3e-06 58.2 119 37.8
Carub.0004s1928 Capsella rubella HOM05D002337 ORTHO05D002412 3.0e-06 57.8 59 59.3
HanXRQChr07g0200871 Helianthus annuus HOM05D002337 ORTHO05D002412 3.0e-06 57.8 58 51.7
Sabra08G0034400 Salix brachista HOM05D002337 ORTHO05D002412 3.0e-06 57.8 60 55.0
Atru.chr12.580 Acer truncatum HOM05D002337 ORTHO05D002412 3.9e-06 57.4 51 60.8
Eucgr.G02770 Eucalyptus grandis HOM05D002337 ORTHO05D002412 3.9e-06 57.4 63 52.4
Thhalv10016916m.g Eutrema salsugineum HOM05D002337 ORTHO05D002412 3.9e-06 57.4 57 61.4
HanXRQChr14g0453891 Helianthus annuus HOM05D002337 ORTHO05D002412 3.9e-06 57.4 89 40.4
THA.LOC104823436 Tarenaya hassleriana HOM05D002337 ORTHO05D002412 3.9e-06 57.4 58 55.2
Zm00001eb265960 Zea mays HOM05D002337 ORTHO05D002412 3.9e-06 57.4 58 51.7
Zm00001eb368130 Zea mays HOM05D002337 ORTHO05D002412 3.9e-06 57.4 51 62.7
CSS0012314 Camellia sinensis var. sinensis HOM05D002337 ORTHO05D002412 5.1e-06 57.0 51 60.8
Cfa017455 Carpinus fangiana HOM05D002337 ORTHO05D002412 5.1e-06 57.0 58 51.7
COL.COLO4_10886 Corchorus olitorius HOM05D002337 ORTHO05D002412 5.1e-06 57.0 53 60.4
Haze_20705 Corylus avellana HOM05D002337 ORTHO05D002412 5.1e-06 57.0 58 51.7
Gohir.D04G060700 Gossypium hirsutum HOM05D002337 ORTHO05D002412 5.1e-06 57.0 84 44.0
Gorai.012G067600 Gossypium raimondii HOM05D002337 ORTHO05D002412 5.1e-06 57.0 84 44.0
Lalb_Chr21g0307221 Lupinus albus HOM05D002337 ORTHO05D002412 5.1e-06 57.0 51 56.9
Thecc.05G047800 Theobroma cacao HOM05D002337 ORTHO05D002412 5.1e-06 57.0 58 53.4
arahy.Tifrunner.gnm1.ann1.5AB6QK Arachis hypogaea HOM05D002337 ORTHO05D002412 6.6e-06 56.6 50 56.0
BcaB01g03780 Brassica carinata HOM05D002337 ORTHO05D002412 6.6e-06 56.6 57 56.1
CSS0046032 Camellia sinensis var. sinensis HOM05D002337 ORTHO05D002412 6.6e-06 56.6 79 43.0
Haze_16978 Corylus avellana HOM05D002337 ORTHO05D002412 6.6e-06 56.6 58 53.4
DCAR_014946 Daucus carota HOM05D002337 ORTHO05D002412 6.6e-06 56.6 107 38.3
Gohir.A05G352200 Gossypium hirsutum HOM05D002337 ORTHO05D002412 6.6e-06 56.6 63 52.4
Hma1.2p1_0207F.1_g087900 Hydrangea macrophylla HOM05D002337 ORTHO05D002412 6.6e-06 56.6 51 58.8
Sabra16G0089000 Salix brachista HOM05D002337 ORTHO05D002412 6.6e-06 56.6 58 53.4
Solyc09g005880.1 Solanum lycopersicum HOM05D002337 ORTHO05D002412 6.6e-06 56.6 57 50.9
CARHR132220 Cardamine hirsuta HOM05D002337 ORTHO05D002412 8.7e-06 56.2 51 62.7
Duzib128G1181 Durio zibethinus HOM05D002337 ORTHO05D002412 8.7e-06 56.2 58 51.7
Gohir.A04G078300 Gossypium hirsutum HOM05D002337 ORTHO05D002412 8.7e-06 56.2 58 51.7
Gohir.D04G117500 Gossypium hirsutum HOM05D002337 ORTHO05D002412 8.7e-06 56.2 58 51.7
Gorai.006G176700 Gossypium raimondii HOM05D002337 ORTHO05D002412 8.7e-06 56.2 103 40.8
Gorai.009G422500 Gossypium raimondii HOM05D002337 ORTHO05D002412 8.7e-06 56.2 58 51.7
Os01g0836900 Oryza sativa ssp. japonica HOM05D002337 ORTHO05D002412 8.7e-06 56.2 57 57.9
TPR.G31957 Trifolium pratense HOM05D002337 ORTHO05D002412 8.7e-06 56.2 51 54.9


User provided reference genes

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