Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 4.5e-105 385.2 291 100.0
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.6e-81 307.0 291 87.3
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 1.3e-32 144.4 269 68.0
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 1.3e-32 144.4 270 68.1
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 8.7e-32 141.7 270 68.5
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 8.7e-32 141.7 270 68.5
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.1e-31 141.4 270 67.8
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.9e-31 140.6 270 67.4
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 4.3e-31 139.4 275 64.4
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 4.3e-31 139.4 272 60.3
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 7.3e-31 138.7 272 65.8
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 9.6e-31 138.3 254 63.8
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 9.6e-31 138.3 265 58.9
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 2.1e-30 137.1 272 64.7
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 2.1e-30 137.1 270 65.2
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 1.4e-29 134.4 268 65.7
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 2.4e-29 133.7 276 64.5
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 4.0e-29 132.9 272 63.6
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 4.0e-29 132.9 283 63.6
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 4.0e-29 132.9 282 62.8
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 1.2e-28 131.3 275 62.5
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 1.2e-28 131.3 270 57.0
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.2e-28 131.3 270 65.6
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.5e-28 131.0 274 64.2
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 2.0e-28 130.6 276 64.5
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 2.6e-28 130.2 269 66.5
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 2.6e-28 130.2 270 65.2
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 2.6e-28 130.2 273 62.6
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 3.4e-28 129.8 272 63.2
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 3.4e-28 129.8 249 67.9
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 4.4e-28 129.4 270 63.3
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 5.8e-28 129.0 272 65.4
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 7.6e-28 128.6 270 64.8
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.3e-27 127.9 286 62.6
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 1.3e-27 127.9 268 65.3
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 1.3e-27 127.9 268 65.3
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 1.3e-27 127.9 267 65.2
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 1.3e-27 127.9 271 64.9
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 1.7e-27 127.5 270 64.4
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.7e-27 127.5 286 62.6
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 1.7e-27 127.5 269 64.3
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 2.2e-27 127.1 271 63.1
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 2.9e-27 126.7 274 63.1
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 2.9e-27 126.7 273 63.0
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.9e-27 126.7 271 64.9
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.9e-27 126.7 271 64.9
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 2.9e-27 126.7 276 60.1
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 2.9e-27 126.7 274 62.4
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 3.8e-27 126.3 270 63.7
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 4.9e-27 125.9 281 63.3
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 4.9e-27 125.9 268 65.3
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 4.9e-27 125.9 269 63.6
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 4.9e-27 125.9 269 63.6
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.9e-27 125.9 271 64.2
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 6.4e-27 125.6 270 64.8
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 6.4e-27 125.6 271 63.1
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 8.4e-27 125.2 274 62.8
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 8.4e-27 125.2 272 64.0
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 8.4e-27 125.2 269 64.7
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 8.4e-27 125.2 269 63.6
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 1.1e-26 124.8 277 65.0
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 1.1e-26 124.8 271 62.7
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.1e-26 124.8 269 63.2
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.1e-26 124.8 271 63.8
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.1e-26 124.8 271 63.8
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.4e-26 124.4 272 62.9
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 1.4e-26 124.4 271 62.4
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 1.4e-26 124.4 229 73.4
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 1.4e-26 124.4 270 63.7
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.9e-26 124.0 269 64.3
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 1.9e-26 124.0 266 64.3
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 2.4e-26 123.6 277 63.5
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.4e-26 123.6 272 62.9
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 3.2e-26 123.2 271 64.6
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 3.2e-26 123.2 77 76.6
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 4.2e-26 122.9 272 63.6
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 5.4e-26 122.5 271 63.1
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 5.4e-26 122.5 269 59.5
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 7.1e-26 122.1 277 63.2
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 7.1e-26 122.1 277 63.2
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 7.1e-26 122.1 277 63.2
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 7.1e-26 122.1 277 63.2
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 9.3e-26 121.7 277 62.8
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.2e-25 121.3 229 71.6
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 2.1e-25 120.6 284 62.3
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 2.7e-25 120.2 270 60.4
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 2.7e-25 120.2 270 60.4
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 2.7e-25 120.2 274 59.9
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 2.7e-25 120.2 265 63.0
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 4.6e-25 119.4 83 67.5
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 6.0e-25 119.0 252 67.9
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 6.0e-25 119.0 264 64.0
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 7.8e-25 118.6 272 62.5
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.0e-24 118.2 270 63.0
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 1.3e-24 117.9 270 62.2
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 1.7e-24 117.5 266 64.3
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 3.0e-24 116.7 275 63.3
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 3.0e-24 116.7 261 66.7
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 3.0e-24 116.7 274 61.3
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 3.9e-24 116.3 272 61.8
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 6.6e-24 115.5 267 59.9
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 6.6e-24 115.5 272 61.8
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 6.6e-24 115.5 230 70.4
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 6.6e-24 115.5 271 38.0
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 8.7e-24 115.2 229 70.7
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 1.1e-23 114.8 272 61.8
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.1e-23 114.8 275 62.2
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 1.1e-23 114.8 273 60.8
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 1.9e-23 114.0 274 62.0
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 3.3e-23 113.2 275 62.9
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 3.3e-23 113.2 282 59.9
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 4.3e-23 112.8 279 60.9
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 5.6e-23 112.5 272 62.9
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 5.6e-23 112.5 275 62.9
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 5.6e-23 112.5 275 62.9
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 5.6e-23 112.5 244 64.3
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 7.3e-23 112.1 280 61.4
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 7.3e-23 112.1 275 60.0
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 9.6e-23 111.7 273 61.9
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 9.6e-23 111.7 270 61.9
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 9.6e-23 111.7 275 60.4
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 1.3e-22 111.3 272 60.3
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 1.6e-22 110.9 266 62.4
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 2.1e-22 110.5 275 62.5
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 2.1e-22 110.5 275 62.5
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 2.1e-22 110.5 239 66.1
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 6.2e-22 109.0 83 66.3
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 8.1e-22 108.6 263 62.7
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 8.1e-22 108.6 82 59.8
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 8.1e-22 108.6 271 62.7
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 1.1e-21 108.2 272 61.4
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.1e-21 108.2 271 60.9
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 6.9e-21 105.5 229 68.6
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 2.6e-20 103.6 275 61.8
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 3.4e-20 103.2 225 69.8
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 1.3e-19 101.3 274 60.6
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 4.9e-19 99.4 271 60.1
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.1e-18 98.2 251 62.5
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 7.1e-18 95.5 77 62.3
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 1.2e-17 94.7 275 57.1
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.6e-17 94.4 82 61.0
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 7.9e-17 92.0 244 63.9
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 6.7e-16 89.0 275 59.3
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 9.0e-13 78.6 270 45.6
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 4.5e-12 76.3 238 63.4
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 7.6e-12 75.5 264 55.3
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.2e-11 73.9 235 64.3
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 2.9e-11 73.6 238 63.0
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.9e-10 70.9 232 63.4
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 7.9e-09 65.5 53 62.3
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 1.9e-07 60.8 50 56.0
CDE04G0838 Ceratophyllum demersum HOM05D000094 ORTHO05D002904 4.8e-06 56.2 103 36.9


User provided reference genes

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