Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 6.8e-136 487.6 309 100.0
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 6.8e-43 178.7 326 47.2
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 2.8e-36 156.8 312 45.2
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 5.2e-35 152.5 308 44.2
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 2.0e-34 150.6 310 44.8
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.0e-34 150.6 321 43.6
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 4.4e-34 149.4 288 41.0
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.4e-34 149.4 303 46.2
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 1.3e-33 147.9 313 47.0
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 3.7e-33 146.4 335 48.4
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 4.9e-33 146.0 314 53.2
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 4.9e-33 146.0 317 47.9
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 8.3e-33 145.2 326 42.6
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 8.3e-33 145.2 309 44.0
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 1.4e-32 144.4 335 49.0
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 1.9e-32 144.1 310 45.8
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.9e-32 144.1 319 45.8
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 1.9e-32 144.1 326 43.3
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 2.4e-32 143.7 290 48.3
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 2.4e-32 143.7 315 46.3
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 3.2e-32 143.3 303 47.5
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 4.1e-32 142.9 327 48.6
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 4.1e-32 142.9 299 49.2
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 7.0e-32 142.1 333 40.8
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 9.2e-32 141.7 311 43.4
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 1.6e-31 141.0 321 47.0
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 2.0e-31 140.6 304 41.8
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.0e-31 140.6 309 41.7
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 2.0e-31 140.6 311 41.5
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 3.5e-31 139.8 289 47.1
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 4.6e-31 139.4 281 49.1
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 4.6e-31 139.4 318 44.7
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 7.8e-31 138.7 324 41.0
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 1.0e-30 138.3 311 47.3
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 1.0e-30 138.3 309 45.0
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 1.0e-30 138.3 318 40.3
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.3e-30 137.9 318 39.9
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 1.7e-30 137.5 302 44.7
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.7e-30 137.5 313 47.0
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.0e-30 136.7 318 43.4
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.0e-30 136.7 291 46.0
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.0e-30 136.7 291 46.0
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 5.0e-30 136.0 315 46.7
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 5.0e-30 136.0 330 44.2
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 5.0e-30 136.0 309 43.0
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 8.6e-30 135.2 347 46.1
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 8.6e-30 135.2 287 50.9
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 8.6e-30 135.2 306 42.8
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 8.6e-30 135.2 300 42.0
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 8.6e-30 135.2 300 42.0
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 8.6e-30 135.2 322 44.7
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 1.1e-29 134.8 326 48.8
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 1.5e-29 134.4 345 43.2
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 1.5e-29 134.4 320 43.8
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 1.5e-29 134.4 322 39.4
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 1.9e-29 134.0 311 45.7
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 1.9e-29 134.0 303 43.2
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 2.5e-29 133.7 314 51.6
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 3.3e-29 133.3 344 40.7
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 3.3e-29 133.3 311 42.1
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.3e-29 133.3 348 41.4
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 3.3e-29 133.3 320 42.8
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.3e-29 132.9 339 41.3
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 4.3e-29 132.9 311 44.1
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 4.3e-29 132.9 319 44.5
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 5.6e-29 132.5 318 34.9
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 1.2e-28 131.3 319 41.1
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 1.6e-28 131.0 330 42.1
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 1.6e-28 131.0 319 42.6
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 1.6e-28 131.0 319 42.6
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 1.6e-28 131.0 319 49.5
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 1.6e-28 131.0 310 43.5
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 2.8e-28 130.2 321 44.5
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 3.6e-28 129.8 329 43.8
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 4.7e-28 129.4 319 44.5
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 4.7e-28 129.4 319 46.7
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 6.2e-28 129.0 334 46.4
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 6.2e-28 129.0 334 38.6
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 6.2e-28 129.0 320 41.9
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 8.1e-28 128.6 315 51.1
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 8.1e-28 128.6 320 44.1
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 1.8e-27 127.5 315 40.0
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 1.8e-27 127.5 273 49.8
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 2.3e-27 127.1 307 43.0
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 3.1e-27 126.7 306 40.2
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 3.1e-27 126.7 310 50.0
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 3.1e-27 126.7 310 50.0
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 4.0e-27 126.3 284 51.1
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 5.2e-27 125.9 310 38.7
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 5.2e-27 125.9 311 45.3
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 5.2e-27 125.9 295 41.7
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 5.2e-27 125.9 321 45.2
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 8.9e-27 125.2 284 48.9
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 8.9e-27 125.2 320 41.6
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 8.9e-27 125.2 330 46.7
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 1.2e-26 124.8 292 43.5
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 2.0e-26 124.0 319 40.1
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 3.4e-26 123.2 294 45.2
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 3.4e-26 123.2 321 40.5
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 4.4e-26 122.9 314 41.1
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 7.5e-26 122.1 304 42.8
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 9.8e-26 121.7 284 48.6
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 9.8e-26 121.7 309 44.3
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 1.3e-25 121.3 325 43.7
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 2.2e-25 120.6 309 46.6
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 2.2e-25 120.6 316 43.7
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 2.2e-25 120.6 292 45.5
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.2e-25 120.6 320 40.9
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 2.9e-25 120.2 318 42.8
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 3.7e-25 119.8 326 37.1
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 3.7e-25 119.8 314 45.9
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 1.4e-24 117.9 258 43.0
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 1.4e-24 117.9 303 44.2
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.9e-24 117.5 326 42.9
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 2.4e-24 117.1 313 42.8
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 3.2e-24 116.7 319 45.1
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 3.2e-24 116.7 309 48.2
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 4.1e-24 116.3 317 49.8
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 5.4e-24 115.9 286 52.4
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 5.4e-24 115.9 318 41.2
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 5.4e-24 115.9 311 44.7
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 5.4e-24 115.9 308 43.5
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 7.1e-24 115.5 315 42.5
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 7.1e-24 115.5 118 55.1
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 1.2e-23 114.8 318 42.8
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.1e-23 114.0 124 50.0
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 2.7e-23 113.6 169 56.8
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 3.5e-23 113.2 184 50.5
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 4.6e-23 112.8 322 47.5
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 6.0e-23 112.5 299 42.5
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 6.0e-23 112.5 349 40.7
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.0e-22 111.7 312 42.0
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 1.3e-22 111.3 285 48.8
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 3.9e-22 109.8 334 41.6
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 3.9e-22 109.8 306 45.8
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 3.9e-22 109.8 278 43.5
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 3.9e-22 109.8 320 45.6
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 6.6e-22 109.0 121 47.9
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 8.6e-22 108.6 285 49.5
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 3.3e-21 106.7 285 43.9
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 7.3e-21 105.5 302 41.4
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 9.5e-21 105.1 137 47.4
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.2e-20 104.8 309 40.5
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 1.2e-20 104.8 292 38.7
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 2.1e-20 104.0 134 47.0
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 3.6e-20 103.2 325 44.0
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 7.6e-18 95.5 282 45.4
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 7.6e-18 95.5 92 53.3
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.3e-17 94.7 311 40.8
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 1.7e-17 94.4 64 68.8
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 6.4e-17 92.4 295 33.6
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 1.1e-16 91.7 323 38.4
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 3.5e-15 86.7 101 46.5
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 1.7e-14 84.3 421 33.5
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 5.1e-14 82.8 252 37.3
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 7.3e-13 79.0 276 48.6
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 1.6e-12 77.8 258 46.1
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.4e-11 73.9 117 43.6
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.9e-11 72.4 161 47.2
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 6.9e-11 72.4 326 37.7
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 1.4e-08 64.7 112 37.5
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 2.3e-06 57.4 227 47.6


User provided reference genes

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