Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 3.9e-165 584.7 296 100.0
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 5.7e-55 218.8 242 53.3
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 1.5e-52 210.7 226 53.5
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 2.8e-46 189.9 205 52.7
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 2.8e-46 189.9 205 52.7
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 2.6e-44 183.3 237 47.3
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 1.0e-43 181.4 191 49.7
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 1.7e-43 180.6 193 49.7
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 2.2e-43 180.3 189 50.8
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 6.5e-43 178.7 198 47.0
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 8.5e-43 178.3 187 50.8
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 1.4e-42 177.6 248 43.5
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 1.9e-42 177.2 227 44.1
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 1.9e-42 177.2 227 44.1
CBR_g28643 Chara braunii HOM05D006578 ORTHO05D008100 1.9e-42 177.2 211 47.4
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 1.9e-42 177.2 200 48.5
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 2.5e-42 176.8 205 48.8
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 2.5e-42 176.8 189 47.1
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 7.2e-42 175.3 188 49.5
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 7.2e-42 175.3 196 49.5
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 9.4e-42 174.9 233 45.9
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 9.4e-42 174.9 234 44.4
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 9.4e-42 174.9 194 46.9
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 1.6e-41 174.1 190 46.8
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 1.6e-41 174.1 193 47.2
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 1.6e-41 174.1 190 47.9
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 3.6e-41 172.9 191 47.6
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 7.9e-41 171.8 191 46.6
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 1.0e-40 171.4 192 49.0
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 1.4e-40 171.0 183 48.1
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 1.8e-40 170.6 189 47.6
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 2.3e-40 170.2 190 50.5
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 2.3e-40 170.2 189 48.1
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 3.0e-40 169.9 193 46.6
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 3.0e-40 169.9 194 46.9
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 3.9e-40 169.5 184 51.1
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 3.9e-40 169.5 186 48.4
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 6.7e-40 168.7 230 44.3
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 6.7e-40 168.7 195 46.2
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 8.8e-40 168.3 195 46.2
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 8.8e-40 168.3 196 44.9
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 8.8e-40 168.3 196 44.9
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 2.0e-39 167.2 190 47.9
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 2.0e-39 167.2 239 41.4
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 2.6e-39 166.8 189 45.5
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 2.6e-39 166.8 182 46.7
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 3.3e-39 166.4 196 47.4
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 4.4e-39 166.0 232 44.0
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 5.7e-39 165.6 190 45.3
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 5.7e-39 165.6 232 40.9
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 7.4e-39 165.2 192 47.4
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 7.4e-39 165.2 196 44.4
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 7.4e-39 165.2 195 45.1
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 9.7e-39 164.9 189 45.5
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 1.3e-38 164.5 240 39.6
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 3.7e-38 162.9 192 45.3
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 3.7e-38 162.9 195 43.1
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 3.7e-38 162.9 228 41.2
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 4.8e-38 162.5 195 45.1
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 6.3e-38 162.2 196 43.9
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 6.3e-38 162.2 187 48.1
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 1.4e-37 161.0 189 45.0
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 1.4e-37 161.0 189 45.0
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 1.4e-37 161.0 191 47.1
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 1.8e-37 160.6 195 44.6
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 2.4e-37 160.2 178 46.1
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 2.4e-37 160.2 189 45.0
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 2.4e-37 160.2 189 43.9
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 2.4e-37 160.2 195 44.1
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 7.0e-37 158.7 189 42.9
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 7.0e-37 158.7 197 46.2
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 9.1e-37 158.3 192 44.3
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 9.1e-37 158.3 183 45.4
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 9.1e-37 158.3 241 40.2
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 1.2e-36 157.9 197 43.1
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.6e-36 157.5 196 43.4
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.0e-36 157.1 191 45.0
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 2.0e-36 157.1 189 43.4
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 2.6e-36 156.8 219 39.7
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 4.5e-36 156.0 196 42.3
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 5.9e-36 155.6 197 44.2
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 5.9e-36 155.6 243 41.2
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 5.9e-36 155.6 189 44.4
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 1.3e-35 154.5 231 41.1
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 2.2e-35 153.7 189 42.3
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 3.8e-35 152.9 234 39.7
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 3.8e-35 152.9 131 55.0
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 8.5e-35 151.8 201 42.3
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 1.9e-34 150.6 192 43.8
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 2.5e-34 150.2 214 43.0
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 7.2e-34 148.7 194 43.8
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 9.4e-34 148.3 213 40.4
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 1.6e-33 147.5 185 45.4
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 3.6e-33 146.4 197 43.7
FAN13G3291 Fragaria x ananassa HOM05D006578 ORTHO05D008100 2.0e-28 130.6 179 43.0
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 3.5e-28 129.8 190 40.0
AUR62019843 Chenopodium quinoa HOM05D006578 ORTHO05D008100 1.5e-26 124.4 228 37.3
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 5.5e-26 122.5 196 38.3
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 1.4e-24 117.9 193 38.3
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 1.2e-09 68.2 90 43.3
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.2e-09 68.2 122 35.2
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 6.1e-09 65.9 104 41.3
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 6.1e-09 65.9 175 30.3
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 8.0e-09 65.5 95 44.2
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 1.0e-08 65.1 93 40.9
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 8.9e-08 62.0 189 29.6
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 8.9e-08 62.0 189 29.6
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 1.2e-07 61.6 105 40.0
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 2.0e-07 60.8 120 31.7
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 2.0e-07 60.8 120 31.7
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 2.6e-07 60.5 111 37.8
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 2.6e-07 60.5 95 40.0
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 3.4e-07 60.1 99 36.4
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 4.4e-07 59.7 121 34.7
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 4.4e-07 59.7 94 38.3
Oeu054024.1 Olea europaea HOM05D006578 ORTHO05D008100 4.4e-07 59.7 58 50.0
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 7.5e-07 58.9 154 31.8
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 9.8e-07 58.5 89 39.3
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 1.3e-06 58.2 129 35.7
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 1.7e-06 57.8 110 38.2
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 6.4e-06 55.8 89 37.1
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 8.3e-06 55.5 115 35.7


User provided reference genes

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