Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 4.9e-141 504.6 278 100.0
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 3.6e-51 206.1 200 63.0
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 9.7e-49 198.0 198 57.6
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 1.5e-36 157.5 211 47.9
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 4.7e-35 152.5 204 52.0
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 4.7e-35 152.5 197 50.8
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 4.7e-35 152.5 204 48.0
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 8.0e-35 151.8 195 50.3
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 1.0e-34 151.4 244 43.9
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 1.4e-34 151.0 212 45.3
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 1.8e-34 150.6 195 50.8
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 3.0e-34 149.8 249 43.0
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 3.0e-34 149.8 184 51.1
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 8.8e-34 148.3 213 47.4
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 1.5e-33 147.5 218 43.6
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 2.0e-33 147.1 213 45.1
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 2.0e-33 147.1 183 50.3
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 2.6e-33 146.7 192 48.4
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 2.6e-33 146.7 218 42.7
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 2.6e-33 146.7 226 44.7
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 3.4e-33 146.4 218 42.7
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 3.4e-33 146.4 218 42.7
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 3.4e-33 146.4 226 44.2
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 3.4e-33 146.4 202 48.5
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 4.4e-33 146.0 218 43.1
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 4.4e-33 146.0 248 42.3
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 4.4e-33 146.0 210 44.8
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 5.7e-33 145.6 270 41.9
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 7.5e-33 145.2 218 42.7
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 7.5e-33 145.2 192 49.5
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 1.3e-32 144.4 245 43.3
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 1.3e-32 144.4 206 46.6
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 1.3e-32 144.4 201 47.3
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 1.7e-32 144.1 214 45.3
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 1.7e-32 144.1 184 50.0
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 2.2e-32 143.7 212 47.2
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 2.2e-32 143.7 199 47.7
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 2.8e-32 143.3 205 46.8
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 2.8e-32 143.3 189 49.2
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 3.7e-32 142.9 205 46.8
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 3.7e-32 142.9 193 50.3
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 4.8e-32 142.5 173 49.7
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 4.8e-32 142.5 173 49.7
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 4.8e-32 142.5 173 49.7
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 6.3e-32 142.1 211 43.6
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 6.3e-32 142.1 184 50.5
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 6.3e-32 142.1 189 48.7
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 8.3e-32 141.7 193 47.2
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 1.1e-31 141.4 245 41.6
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 1.8e-31 140.6 184 47.8
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 1.8e-31 140.6 241 43.2
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 1.8e-31 140.6 241 43.2
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 2.4e-31 140.2 234 42.7
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 2.4e-31 140.2 227 43.6
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 2.4e-31 140.2 211 46.0
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 3.1e-31 139.8 203 44.3
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 3.1e-31 139.8 224 42.0
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 4.1e-31 139.4 167 50.9
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 5.4e-31 139.0 187 47.1
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 5.4e-31 139.0 187 47.6
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 5.4e-31 139.0 187 47.6
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 5.4e-31 139.0 260 40.4
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 7.0e-31 138.7 202 44.1
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 9.1e-31 138.3 198 47.5
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 1.6e-30 137.5 220 43.6
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 1.6e-30 137.5 198 46.0
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 1.6e-30 137.5 247 42.5
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 2.0e-30 137.1 194 45.4
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 2.7e-30 136.7 211 43.6
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 3.5e-30 136.3 205 46.8
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 3.5e-30 136.3 199 46.7
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 3.5e-30 136.3 239 40.2
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 5.9e-30 135.6 275 40.4
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 7.7e-30 135.2 245 40.0
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 1.0e-29 134.8 205 45.9
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 1.3e-29 134.4 230 41.7
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 1.3e-29 134.4 189 45.5
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 1.7e-29 134.0 205 44.9
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 2.3e-29 133.7 200 44.5
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 2.3e-29 133.7 214 44.4
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 8.6e-29 131.7 210 44.3
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.1e-28 131.3 194 43.3
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 1.9e-28 130.6 206 42.7
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 3.3e-28 129.8 184 43.5
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 3.3e-28 129.8 206 42.7
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 3.3e-28 129.8 225 40.4
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 5.5e-28 129.0 192 43.8
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 9.5e-28 128.3 245 38.0
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.6e-27 127.5 194 42.8
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 4.7e-27 125.9 251 39.0
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 8.0e-27 125.2 193 45.6
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 8.0e-27 125.2 202 44.6
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 5.2e-26 122.5 188 45.7
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 6.8e-26 122.1 170 46.5
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.2e-25 121.3 188 45.2
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 1.2e-25 121.3 236 39.4
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 3.4e-25 119.8 188 45.2
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 4.4e-25 119.4 162 48.1
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 7.5e-25 118.6 181 43.6
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 6.3e-24 115.5 204 40.2
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 6.3e-24 115.5 214 39.3
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 7.8e-22 108.6 151 46.4
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 2.9e-21 106.7 173 42.8
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 3.9e-21 106.3 176 39.8
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 3.9e-21 106.3 175 41.7
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 6.6e-21 105.5 161 44.7
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 1.1e-20 104.8 152 44.1
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 4.3e-20 102.8 252 36.5
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 2.3e-18 97.1 136 47.1
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 2.3e-18 97.1 130 43.8
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 1.5e-17 94.4 144 46.5
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 7.5e-17 92.0 106 50.0
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 2.9e-16 90.1 167 41.3
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 8.3e-16 88.6 132 44.7
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 2.0e-14 84.0 131 45.0
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 4.6e-14 82.8 153 37.3
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 7.8e-14 82.0 149 37.6
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 7.8e-14 82.0 149 37.6
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 2.5e-12 77.0 126 43.7
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 6.2e-11 72.4 120 38.3
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 6.8e-10 68.9 125 36.8
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 4.9e-08 62.8 172 34.3
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 2.4e-07 60.5 101 41.6
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 1.6e-06 57.8 74 45.9


User provided reference genes

Program Settings