Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_19220 Physcomitrium patens HOM05D006416 ORTHO05D008054 5.6e-159 564.3 301 100.0
Pp3c7_6980 Physcomitrium patens HOM05D006416 ORTHO05D008054 2.9e-139 498.8 299 88.3
Cc02_g32670 Coffea canephora HOM05D006416 ORTHO05D008054 1.3e-94 350.5 274 68.2
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.7e-94 350.1 301 67.4
Nn1g02093 Nelumbo nucifera HOM05D006416 ORTHO05D008054 3.1e-93 345.9 231 77.5
Dinv22903 Davidia involucrata HOM05D006416 ORTHO05D008054 4.1e-93 345.5 226 76.1
Nn4g26146 Nelumbo nucifera HOM05D006416 ORTHO05D008054 9.1e-93 344.4 285 67.0
Oeu032896.2 Olea europaea HOM05D006416 ORTHO05D008054 3.5e-92 342.4 280 67.9
CDE08G0960 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 4.5e-92 342.0 256 71.5
Nitab4.5_0007238g0010 Nicotiana tabacum HOM05D006416 ORTHO05D008054 5.9e-92 341.7 275 67.3
Oeu043843.1 Olea europaea HOM05D006416 ORTHO05D008054 7.7e-92 341.3 278 66.9
PGR031G2709 Punica granatum HOM05D006416 ORTHO05D008054 7.7e-92 341.3 226 75.7
Lalb_Chr06g0167821 Lupinus albus HOM05D006416 ORTHO05D008054 1.0e-91 340.9 226 77.4
MBI19_g27532_MAGBIO Magnolia biondii HOM05D006416 ORTHO05D008054 1.3e-91 340.5 226 76.5
Thecc.05G308500 Theobroma cacao HOM05D006416 ORTHO05D008054 1.3e-91 340.5 294 64.3
arahy.Tifrunner.gnm1.ann1.ICF70N Arachis hypogaea HOM05D006416 ORTHO05D008054 1.7e-91 340.1 250 72.0
arahy.Tifrunner.gnm1.ann1.L7FLNG Arachis hypogaea HOM05D006416 ORTHO05D008054 1.7e-91 340.1 250 72.0
Ah.06g190130 Amaranthus hybridus HOM05D006416 ORTHO05D008054 2.2e-91 339.7 280 66.8
Gohir.A11G262900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 3.8e-91 339.0 226 76.5
Gohir.D11G272900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 3.8e-91 339.0 226 76.5
Gorai.007G294200 Gossypium raimondii HOM05D006416 ORTHO05D008054 3.8e-91 339.0 226 76.5
Nitab4.5_0004940g0060 Nicotiana tabacum HOM05D006416 ORTHO05D008054 3.8e-91 339.0 275 66.5
CiPaw.08G166800 Carya illinoinensis HOM05D006416 ORTHO05D008054 5.0e-91 338.6 226 75.2
Actinidia23608 Actinidia chinensis HOM05D006416 ORTHO05D008054 8.5e-91 337.8 231 74.5
CAN.G1134.18 Capsicum annuum HOM05D006416 ORTHO05D008054 8.5e-91 337.8 293 64.2
QL03p004338 Quercus lobata HOM05D006416 ORTHO05D008054 1.1e-90 337.4 225 75.1
Atru.chr2.491 Acer truncatum HOM05D006416 ORTHO05D008054 1.5e-90 337.0 228 75.9
Peaxi162Scf00434g00329 Petunia axillaris HOM05D006416 ORTHO05D008054 1.5e-90 337.0 268 66.4
GSVIVG01000004001 Vitis vinifera HOM05D006416 ORTHO05D008054 1.9e-90 336.7 226 75.2
CDE02G0677 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 2.5e-90 336.3 266 68.8
Duzib128G1696 Durio zibethinus HOM05D006416 ORTHO05D008054 2.5e-90 336.3 294 64.3
PGSC0003DMG402028574 Solanum tuberosum HOM05D006416 ORTHO05D008054 3.2e-90 335.9 272 66.9
CANSAT54G1414 Cannabis sativa HOM05D006416 ORTHO05D008054 4.2e-90 335.5 227 76.2
DCAR_029435 Daucus carota HOM05D006416 ORTHO05D008054 5.5e-90 335.1 229 74.7
Ciclev10002001m.g Citrus clementina HOM05D006416 ORTHO05D008054 7.2e-90 334.7 228 75.4
Phvul.007G182400 Phaseolus vulgaris HOM05D006416 ORTHO05D008054 7.2e-90 334.7 286 65.4
MELO3C004307.2 Cucumis melo HOM05D006416 ORTHO05D008054 1.2e-89 334.0 226 75.7
Lj9A681T37 Lonicera japonica HOM05D006416 ORTHO05D008054 1.2e-89 334.0 282 64.2
Sopen01g042190 Solanum pennellii HOM05D006416 ORTHO05D008054 1.2e-89 334.0 293 63.5
Thhalv10023632m.g Eutrema salsugineum HOM05D006416 ORTHO05D008054 1.6e-89 333.6 224 76.3
Solyc01g098640.3 Solanum lycopersicum HOM05D006416 ORTHO05D008054 1.6e-89 333.6 290 63.1
Prupe.6G330400 Prunus persica HOM05D006416 ORTHO05D008054 2.1e-89 333.2 289 64.0
Rhsim07G0179600 Rhododendron simsii HOM05D006416 ORTHO05D008054 2.1e-89 333.2 280 64.3
EL10Ac4g09303 Beta vulgaris HOM05D006416 ORTHO05D008054 2.7e-89 332.8 286 64.0
Haze_04238 Corylus avellana HOM05D006416 ORTHO05D008054 2.7e-89 332.8 257 68.5
Sed0000831 Sechium edule HOM05D006416 ORTHO05D008054 2.7e-89 332.8 250 70.0
FAN02G3793 Fragaria x ananassa HOM05D006416 ORTHO05D008054 3.6e-89 332.4 279 64.5
Cpa.g.sc48.9 Carica papaya HOM05D006416 ORTHO05D008054 4.7e-89 332.0 297 63.6
Potri.013G026400 Populus trichocarpa HOM05D006416 ORTHO05D008054 8.0e-89 331.3 268 67.5
Sabra05G0037800 Salix brachista HOM05D006416 ORTHO05D008054 8.0e-89 331.3 270 66.7
SGA_v2.0_scaffold204G41638 Striga asiatica HOM05D006416 ORTHO05D008054 8.0e-89 331.3 231 74.0
FAN14G3791 Fragaria x ananassa HOM05D006416 ORTHO05D008054 1.0e-88 330.9 279 64.5
MD12G1224000 Malus domestica HOM05D006416 ORTHO05D008054 1.0e-88 330.9 226 74.3
BcaC09g49606 Brassica carinata HOM05D006416 ORTHO05D008054 1.4e-88 330.5 224 75.4
A01p27150 Brassica napus HOM05D006416 ORTHO05D008054 1.4e-88 330.5 224 75.4
C01p34560 Brassica napus HOM05D006416 ORTHO05D008054 1.4e-88 330.5 224 75.4
BolC1t03427H Brassica oleracea HOM05D006416 ORTHO05D008054 1.4e-88 330.5 224 75.4
BraA01t02850Z Brassica rapa HOM05D006416 ORTHO05D008054 1.4e-88 330.5 224 75.4
Duzib177G0710 Durio zibethinus HOM05D006416 ORTHO05D008054 1.4e-88 330.5 287 64.5
Medtr1g082420 Medicago truncatula HOM05D006416 ORTHO05D008054 1.4e-88 330.5 226 74.8
SpUn0002_0460 Schrenkiella parvula HOM05D006416 ORTHO05D008054 1.4e-88 330.5 224 75.4
Zm00001eb346800 Zea mays HOM05D006416 ORTHO05D008054 1.4e-88 330.5 292 64.0
RcHm_v2.0_Chr3g0454061 Rosa chinensis HOM05D006416 ORTHO05D008054 1.8e-88 330.1 272 66.5
TAR362G1050 Trochodendron aralioides HOM05D006416 ORTHO05D008054 1.8e-88 330.1 284 63.7
Ca_10088_v3 Cicer arietinum L. HOM05D006416 ORTHO05D008054 3.0e-88 329.3 226 73.0
ClCG02G016070 Citrullus lanatus HOM05D006416 ORTHO05D008054 3.0e-88 329.3 286 64.7
FAN05G2936 Fragaria x ananassa HOM05D006416 ORTHO05D008054 3.0e-88 329.3 279 64.2
FAN09G2836 Fragaria x ananassa HOM05D006416 ORTHO05D008054 3.0e-88 329.3 264 66.7
SalBow1G1453 Salvia bowleyana HOM05D006416 ORTHO05D008054 3.0e-88 329.3 283 63.6
ATR0626G312 Amborella trichopoda HOM05D006416 ORTHO05D008054 4.0e-88 328.9 285 62.8
MSTRG.2929 Avicennia marina HOM05D006416 ORTHO05D008054 4.0e-88 328.9 273 65.2
Eucgr.H04456 Eucalyptus grandis HOM05D006416 ORTHO05D008054 4.0e-88 328.9 226 74.3
FvH4_6g05320 Fragaria vesca HOM05D006416 ORTHO05D008054 4.0e-88 328.9 279 64.2
FAN14G2526 Fragaria x ananassa HOM05D006416 ORTHO05D008054 4.0e-88 328.9 279 64.2
THA.LOC104823736 Tarenaya hassleriana HOM05D006416 ORTHO05D008054 5.2e-88 328.6 229 72.5
TPR.G2722 Trifolium pratense HOM05D006416 ORTHO05D008054 5.2e-88 328.6 226 72.6
TWI12G1406 Tripterygium wilfordii HOM05D006416 ORTHO05D008054 6.7e-88 328.2 267 65.5
Aqoxy2G03216 Aquilegia oxysepala HOM05D006416 ORTHO05D008054 8.8e-88 327.8 285 62.1
Migut.H00517 Erythranthe guttata HOM05D006416 ORTHO05D008054 1.2e-87 327.4 231 71.9
FAN05G0060 Fragaria x ananassa HOM05D006416 ORTHO05D008054 1.2e-87 327.4 279 63.8
BcaB04g20144 Brassica carinata HOM05D006416 ORTHO05D008054 1.5e-87 327.0 275 65.8
Psat6g148880 Pisum sativum HOM05D006416 ORTHO05D008054 2.0e-87 326.6 226 73.5
Cfa006543 Carpinus fangiana HOM05D006416 ORTHO05D008054 2.6e-87 326.2 295 61.7
Glyma.10G157100 Glycine max HOM05D006416 ORTHO05D008054 3.3e-87 325.9 282 64.5
MD04G1209400 Malus domestica HOM05D006416 ORTHO05D008054 3.3e-87 325.9 264 66.7
Manes.09G163500 Manihot esculenta HOM05D006416 ORTHO05D008054 3.3e-87 325.9 226 73.9
unitig_899.g15132 Utricularia gibba HOM05D000909 ORTHO05D000928 4.4e-87 325.5 231 71.9
Os05g0401100 Oryza sativa ssp. japonica HOM05D006416 ORTHO05D008054 7.5e-87 324.7 224 73.7
Aa31LG2G11890 Aethionema arabicum HOM05D006416 ORTHO05D008054 9.7e-87 324.3 227 71.4
PSO407G0317 Papaver somniferum HOM05D006416 ORTHO05D008054 1.7e-86 323.6 254 66.5
HPP92_006953 Vanilla planifolia HOM05D006416 ORTHO05D008054 2.2e-86 323.2 296 61.5
Glyma.20G231600 Glycine max HOM05D006416 ORTHO05D008054 2.8e-86 322.8 286 63.3
COL.COLO4_13518 Corchorus olitorius HOM05D006416 ORTHO05D008054 3.7e-86 322.4 291 61.9
Lsat_1_v5_gn_8_116020 Lactuca sativa HOM05D006416 ORTHO05D008054 4.8e-86 322.0 253 69.6
SEGI_37406 Sequoiadendron giganteum HOM05D006416 ORTHO05D008054 6.3e-86 321.6 230 73.0
CARHR055910 Cardamine hirsuta HOM05D006416 ORTHO05D008054 8.2e-86 321.2 247 68.4
Carub.0002s0864 Capsella rubella HOM05D006416 ORTHO05D008054 1.1e-85 320.9 272 63.6
Potri.005G038700 Populus trichocarpa HOM05D006416 ORTHO05D008054 1.1e-85 320.9 268 65.7
AL1G65240 Arabidopsis lyrata HOM05D006416 ORTHO05D008054 1.4e-85 320.5 272 63.2
PSO170G0754 Papaver somniferum HOM05D006416 ORTHO05D008054 1.4e-85 320.5 244 68.0
Sc16g0008340 Simmondsia chinensis HOM05D006416 ORTHO05D008054 2.4e-85 319.7 293 62.5
AT1G54780 Arabidopsis thaliana HOM05D006416 ORTHO05D008054 3.1e-85 319.3 272 64.0
Mapoly0079s0006 Marchantia polymorpha HOM05D006416 ORTHO05D008054 3.1e-85 319.3 267 65.9
ECA232G3707 Erigeron canadensis HOM05D006416 ORTHO05D008054 2.0e-84 316.6 227 72.2
SMO329G0005 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 2.0e-84 316.6 222 73.0
CsaV3_2G004910 Cucumis sativus L. HOM05D006416 ORTHO05D008054 3.5e-84 315.8 304 59.9
Lj5g0006935 Lotus japonicus HOM05D006416 ORTHO05D008054 4.5e-84 315.5 279 63.1
HanXRQChr09g0258731 Helianthus annuus HOM05D006416 ORTHO05D008054 7.7e-84 314.7 249 68.7
HanXRQChr15g0486581 Helianthus annuus HOM05D006416 ORTHO05D008054 2.9e-83 312.8 231 71.4
CSS0022908 Camellia sinensis var. sinensis HOM05D006416 ORTHO05D008054 1.2e-81 307.4 279 63.1
Migut.C00218 Erythranthe guttata HOM05D006416 ORTHO05D008054 6.1e-81 305.1 203 74.4
SMO353G0282 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 1.0e-75 287.7 203 70.9
CBR_g30711 Chara braunii HOM05D006416 ORTHO05D008054 8.3e-70 268.1 248 57.3
Hma1.2p1_0666F.1_g199430 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 8.0e-65 251.5 232 59.9
Aa31LG1G5580 Aethionema arabicum HOM05D006416 ORTHO05D008054 5.8e-55 218.8 143 72.7
Cre03.g182150 Chlamydomonas reinhardtii HOM05D006416 ORTHO05D008054 1.1e-50 204.5 261 42.9
MCO01G659 Micromonas commoda HOM05D006416 ORTHO05D008054 8.9e-48 194.9 204 49.0
Lalb_Chr02g0148391 Lupinus albus HOM05D006416 ORTHO05D008054 2.6e-47 193.4 199 55.8
Hma1.2p1_0666F.1_g199440 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 3.0e-43 179.9 125 71.2
PRCOL_00003436 Prasinoderma coloniale HOM05D006416 ORTHO05D008054 1.9e-37 160.6 224 38.4
Lalb_Chr02g0148401 Lupinus albus HOM05D006416 ORTHO05D008054 6.2e-33 145.6 83 90.4
Dinv23978 Davidia involucrata HOM05D006416 ORTHO05D008054 2.4e-32 143.7 86 83.7
arahy.Tifrunner.gnm1.ann1.SGB0EA Arachis hypogaea HOM05D006416 ORTHO05D008054 3.4e-31 139.8 87 73.6
Haze_01725 Corylus avellana HOM05D006416 ORTHO05D008054 4.2e-21 106.3 64 75.0


User provided reference genes

Program Settings