Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 1.2e-250 869.4 439 100.0
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 2.1e-130 469.9 404 60.1
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 4.2e-123 445.7 290 71.4
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 1.7e-119 433.7 379 57.0
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 4.8e-119 432.2 371 59.3
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 4.1e-118 429.1 374 57.5
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 7.0e-118 428.3 377 57.0
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.7e-117 426.4 371 58.0
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 4.5e-117 425.6 373 57.4
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.0e-116 424.5 377 56.0
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 1.0e-116 424.5 377 57.8
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 1.0e-116 424.5 363 58.7
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 1.3e-116 424.1 402 55.2
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 1.3e-116 424.1 371 56.1
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 2.9e-116 422.9 380 58.2
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 1.1e-115 421.0 373 56.6
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.1e-115 421.0 383 56.9
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 1.5e-115 420.6 348 62.1
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 1.9e-115 420.2 361 58.4
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 2.5e-115 419.9 382 56.5
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 2.5e-115 419.9 403 52.1
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 2.5e-115 419.9 363 57.6
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 4.2e-115 419.1 366 56.8
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 7.2e-115 418.3 382 57.1
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.2e-114 417.5 372 56.2
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.2e-114 417.5 395 55.4
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.2e-114 417.5 365 58.6
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 1.6e-114 417.2 378 56.6
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.1e-114 416.8 355 57.2
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 2.7e-114 416.4 398 53.0
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 2.7e-114 416.4 364 56.6
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 8.0e-114 414.8 365 57.3
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.0e-113 414.5 389 54.0
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 1.0e-113 414.5 409 53.8
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 1.8e-113 413.7 385 54.0
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 2.3e-113 413.3 364 56.3
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 2.3e-113 413.3 396 52.0
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 6.8e-113 411.8 357 56.3
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 8.8e-113 411.4 390 54.1
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 2.6e-112 409.8 376 55.3
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 3.4e-112 409.5 370 55.1
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 4.4e-112 409.1 368 55.7
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 5.7e-112 408.7 363 57.0
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 5.7e-112 408.7 383 53.0
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 7.5e-112 408.3 367 57.2
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 7.5e-112 408.3 368 57.9
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 2.8e-111 406.4 354 58.2
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 8.3e-111 404.8 376 55.1
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 8.3e-111 404.8 362 56.1
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 1.1e-110 404.4 384 54.2
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 1.1e-110 404.4 379 54.9
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 1.4e-110 404.1 369 56.6
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 1.8e-110 403.7 376 54.0
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 1.8e-110 403.7 287 65.2
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 2.4e-110 403.3 373 55.0
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 3.1e-110 402.9 375 53.3
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 3.1e-110 402.9 369 56.4
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 4.1e-110 402.5 363 56.2
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 4.1e-110 402.5 304 62.8
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 5.4e-110 402.1 369 55.6
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 5.4e-110 402.1 287 64.8
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 7.0e-110 401.7 357 56.0
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 1.6e-109 400.6 386 53.6
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 2.0e-109 400.2 391 52.9
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 4.5e-109 399.1 362 55.2
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 7.7e-109 398.3 391 51.7
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 7.7e-109 398.3 385 53.0
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 1.0e-108 397.9 416 50.5
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 1.0e-108 397.9 360 56.7
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.0e-108 397.9 370 54.3
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 2.3e-108 396.7 363 55.9
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 2.9e-108 396.4 382 55.0
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 3.8e-108 396.0 362 55.2
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 5.0e-108 395.6 287 63.4
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 5.0e-108 395.6 375 55.2
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 5.0e-108 395.6 375 53.1
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 1.9e-107 393.7 355 60.0
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 4.2e-107 392.5 399 51.6
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 4.2e-107 392.5 395 50.9
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 1.2e-106 391.0 355 56.1
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 1.6e-106 390.6 400 54.0
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 3.6e-106 389.4 360 53.9
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 6.1e-106 388.7 355 55.2
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 6.1e-106 388.7 371 53.9
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 6.1e-106 388.7 373 53.1
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 6.1e-106 388.7 354 55.4
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 4.0e-105 386.0 357 54.9
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 4.0e-105 386.0 357 54.9
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 2.0e-104 383.6 369 53.4
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 2.0e-104 383.6 355 54.9
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 2.6e-104 383.3 376 53.2
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 4.4e-104 382.5 340 55.3
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 7.5e-104 381.7 351 55.3
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.3e-103 380.9 354 54.8
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.7e-103 380.6 365 53.4
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 2.2e-103 380.2 357 55.2
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 2.2e-103 380.2 357 55.2
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.8e-103 379.8 353 53.5
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.4e-102 377.5 371 52.6
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 3.2e-102 376.3 360 53.6
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 4.1e-102 375.9 357 54.9
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 4.1e-102 375.9 364 53.3
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 7.0e-102 375.2 343 55.4
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 9.2e-102 374.8 371 51.5
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.2e-101 374.4 364 52.7
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 2.0e-101 373.6 377 52.3
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.7e-100 370.5 354 54.5
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 1.7e-100 370.5 375 53.3
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 3.9e-100 369.4 366 51.1
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 8.6e-100 368.2 371 52.3
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 1.9e-99 367.1 371 52.3
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 7.3e-99 365.2 353 50.7
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.5e-96 357.5 371 51.2
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.5e-96 357.5 352 52.6
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.0e-96 357.1 361 51.5
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 3.4e-96 356.3 359 50.7
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 7.5e-96 355.1 359 50.7
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 7.5e-96 355.1 370 50.3
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 1.7e-95 354.0 359 51.0
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 1.9e-94 350.5 358 50.3
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 3.2e-94 349.7 342 51.2
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 3.2e-94 349.7 287 58.2
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 9.2e-94 348.2 378 48.9
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 9.2e-94 348.2 365 50.1
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 9.2e-94 348.2 364 50.3
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 9.2e-94 348.2 364 50.3
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 9.2e-94 348.2 365 50.1
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.2e-93 347.8 368 50.0
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 3.5e-93 346.3 334 51.5
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.7e-92 344.0 364 49.7
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.3e-92 343.6 321 51.7
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.5e-91 340.9 338 51.5
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.9e-91 340.5 490 40.4
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 5.6e-91 339.0 364 49.7
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.3e-84 317.0 287 54.7
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.5e-83 314.3 286 56.3
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 4.3e-83 312.8 365 47.1
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.4e-78 297.0 251 56.6
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 5.4e-62 242.7 187 61.5
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 1.1e-59 235.0 294 42.9
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 3.3e-51 206.8 294 39.1
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 6.9e-49 199.1 169 57.4
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 3.2e-46 190.3 158 57.6
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 2.5e-38 164.1 258 37.6
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 2.5e-27 127.5 128 50.0
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 4.8e-26 123.2 248 32.3
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 3.1e-17 94.0 281 28.1
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 3.5e-16 90.5 72 54.2
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 4.5e-16 90.1 123 45.5
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 2.9e-15 87.4 187 31.6
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 2.5e-14 84.3 108 44.4
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 9.7e-11 72.4 60 55.0
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 2.4e-09 67.8 190 31.1


User provided reference genes

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