Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 4.2e-163 578.2 340 100.0
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 6.3e-66 255.4 306 54.2
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 1.1e-65 254.6 308 49.7
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.1e-65 254.6 303 50.5
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 1.4e-65 254.2 303 50.5
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 1.4e-65 254.2 303 50.5
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 1.4e-65 254.2 309 53.7
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 1.8e-65 253.8 298 51.0
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 2.4e-65 253.4 290 51.7
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 2.4e-65 253.4 306 55.2
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 3.1e-65 253.1 308 55.2
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 4.1e-65 252.7 297 55.6
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 4.1e-65 252.7 308 51.0
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 5.3e-65 252.3 298 50.3
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 5.3e-65 252.3 297 51.2
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 5.3e-65 252.3 302 50.3
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 6.9e-65 251.9 290 51.7
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 6.9e-65 251.9 290 51.7
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.2e-64 251.1 293 54.9
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 1.2e-64 251.1 300 55.7
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.2e-64 251.1 302 57.6
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 1.5e-64 250.8 302 54.6
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 1.5e-64 250.8 293 57.0
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 2.0e-64 250.4 294 55.1
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 2.0e-64 250.4 296 51.4
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 2.6e-64 250.0 299 50.5
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 2.6e-64 250.0 298 51.3
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 3.4e-64 249.6 300 56.3
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 3.4e-64 249.6 287 55.7
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 3.4e-64 249.6 304 49.0
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 3.4e-64 249.6 297 54.5
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 4.5e-64 249.2 293 53.9
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 4.5e-64 249.2 313 53.0
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 4.5e-64 249.2 300 48.7
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 5.9e-64 248.8 303 57.1
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 7.7e-64 248.4 301 57.1
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 7.7e-64 248.4 297 60.3
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 1.0e-63 248.1 308 56.5
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 1.0e-63 248.1 294 58.5
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 1.3e-63 247.7 303 55.4
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 2.2e-63 246.9 305 49.2
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 2.2e-63 246.9 290 50.0
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 2.2e-63 246.9 290 50.7
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 2.9e-63 246.5 308 56.8
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 2.9e-63 246.5 297 57.2
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 2.9e-63 246.5 305 54.8
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 5.0e-63 245.7 289 58.5
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 8.5e-63 245.0 298 60.7
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 8.5e-63 245.0 302 49.3
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 8.5e-63 245.0 301 56.8
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 8.5e-63 245.0 293 55.3
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 8.5e-63 245.0 305 47.5
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 8.5e-63 245.0 305 56.4
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 1.1e-62 244.6 323 54.2
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 1.1e-62 244.6 293 54.6
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.4e-62 244.2 298 61.1
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 1.4e-62 244.2 300 49.7
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 1.4e-62 244.2 290 55.9
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 1.9e-62 243.8 302 49.0
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 2.5e-62 243.4 284 50.4
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 2.5e-62 243.4 297 52.5
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 3.2e-62 243.0 290 58.3
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 3.2e-62 243.0 290 55.2
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 3.2e-62 243.0 291 56.7
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.2e-62 243.0 294 49.7
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 3.2e-62 243.0 294 57.5
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 4.2e-62 242.7 301 53.5
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 4.2e-62 242.7 304 47.7
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 4.2e-62 242.7 302 49.0
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 5.5e-62 242.3 305 48.5
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 5.5e-62 242.3 301 50.2
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 7.2e-62 241.9 290 49.7
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 7.2e-62 241.9 292 55.8
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 7.2e-62 241.9 301 48.8
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 9.4e-62 241.5 290 59.0
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 9.4e-62 241.5 307 54.7
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 9.4e-62 241.5 297 55.6
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.2e-61 241.1 294 49.0
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 1.2e-61 241.1 302 47.4
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 1.2e-61 241.1 294 50.0
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.2e-61 241.1 305 46.2
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.6e-61 240.7 308 55.5
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.6e-61 240.7 294 50.0
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 2.1e-61 240.4 303 56.1
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 2.1e-61 240.4 301 48.8
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 2.7e-61 240.0 310 53.9
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 2.7e-61 240.0 290 56.9
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 2.7e-61 240.0 299 53.2
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 2.7e-61 240.0 314 54.8
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 3.6e-61 239.6 317 53.6
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 3.6e-61 239.6 292 55.5
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 3.6e-61 239.6 310 47.7
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 4.7e-61 239.2 308 55.5
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 6.1e-61 238.8 290 57.6
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 6.1e-61 238.8 318 53.5
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 6.1e-61 238.8 318 53.5
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 1.4e-60 237.7 307 54.4
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 1.8e-60 237.3 291 56.7
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.8e-60 237.3 303 52.1
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 2.3e-60 236.9 292 54.8
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 2.3e-60 236.9 301 48.8
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 3.0e-60 236.5 295 55.9
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 3.0e-60 236.5 299 53.8
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 3.0e-60 236.5 295 55.9
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 5.1e-60 235.7 301 46.8
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 3.3e-59 233.0 318 53.5
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 3.3e-59 233.0 284 54.6
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 4.4e-59 232.6 301 47.2
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 5.7e-59 232.3 291 48.5
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 9.7e-59 231.5 233 62.2
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 9.7e-59 231.5 299 49.2
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 1.3e-58 231.1 294 50.0
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 1.4e-57 227.6 299 48.5
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 4.5e-56 222.6 300 47.0
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.0e-55 221.5 293 49.8
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 7.5e-51 205.3 306 44.1
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 2.2e-50 203.8 286 57.0
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 2.2e-50 203.8 302 44.0
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 4.8e-50 202.6 284 50.7
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 2.0e-48 197.2 286 50.0
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 6.5e-47 192.2 234 49.1
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 1.5e-46 191.0 322 48.4
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 3.2e-46 189.9 229 50.2
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 1.6e-45 187.6 234 47.9
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 2.4e-41 173.7 191 61.3
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 3.1e-41 173.3 323 39.6
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 7.0e-41 172.2 305 43.0
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 2.1e-37 160.6 321 38.0
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 7.0e-33 145.6 256 44.5
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.0e-32 144.1 312 45.2
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 5.0e-31 139.4 218 43.1
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 1.0e-28 131.7 188 44.1
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 2.3e-28 130.6 280 35.4
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 1.6e-24 117.9 119 51.3
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.7e-23 114.4 119 51.3
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 1.6e-21 107.8 111 56.8
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 2.0e-16 90.9 136 35.3
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 7.3e-14 82.4 99 53.5
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 9.5e-14 82.0 66 62.1
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 1.6e-13 81.3 74 58.1
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 4.7e-13 79.7 83 55.4
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 8.1e-13 79.0 94 52.1
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 8.9e-12 75.5 209 28.7
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 2.0e-11 74.3 87 49.4
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 3.2e-09 67.0 130 36.2
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 1.6e-08 64.7 84 44.0
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.6e-08 64.7 70 54.3
Nitab4.5_0002915g0090 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.3e-07 60.8 88 44.3


User provided reference genes

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