Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_17450 Physcomitrium patens HOM05D007154 ORTHO05D008945 1.2e-80 303.1 149 100.0
THA.LOC104800635 Tarenaya hassleriana HOM05D007154 ORTHO05D008945 2.1e-21 106.3 125 45.6
arahy.Tifrunner.gnm1.ann1.408I3G Arachis hypogaea HOM05D007154 ORTHO05D008945 3.5e-21 105.5 95 54.7
arahy.Tifrunner.gnm1.ann1.JHQS48 Arachis hypogaea HOM05D007154 ORTHO05D008945 7.8e-21 104.4 93 54.8
Actinidia04367 Actinidia chinensis HOM05D007154 ORTHO05D008945 3.0e-20 102.4 124 45.2
Cc00_g03880 Coffea canephora HOM05D007154 ORTHO05D008945 6.6e-20 101.3 112 46.4
Thhalv10005037m.g Eutrema salsugineum HOM05D007154 ORTHO05D008945 8.7e-20 100.9 104 51.0
Sp2g23770 Schrenkiella parvula HOM05D007154 ORTHO05D008945 8.7e-20 100.9 90 53.3
Ah.10g037940 Amaranthus hybridus HOM05D007154 ORTHO05D008945 1.1e-19 100.5 89 56.2
BcaNung03727 Brassica carinata HOM05D007154 ORTHO05D008945 1.1e-19 100.5 101 51.5
C07p44160 Brassica napus HOM05D007154 ORTHO05D008945 1.1e-19 100.5 101 51.5
BolC7t44940H Brassica oleracea HOM05D007154 ORTHO05D008945 1.1e-19 100.5 101 51.5
PSO063G0981 Papaver somniferum HOM05D007154 ORTHO05D008945 1.1e-19 100.5 91 57.1
PSO782G0712 Papaver somniferum HOM05D007154 ORTHO05D008945 1.1e-19 100.5 91 57.1
Aa31LG11G2830 Aethionema arabicum HOM05D007154 ORTHO05D008945 1.5e-19 100.1 106 49.1
Migut.B01210 Erythranthe guttata HOM05D007154 ORTHO05D008945 1.5e-19 100.1 83 55.4
AL6G34660 Arabidopsis lyrata HOM05D007154 ORTHO05D008945 1.9e-19 99.8 132 44.7
AT5G23395 Arabidopsis thaliana HOM05D007154 ORTHO05D008945 1.9e-19 99.8 89 53.9
A06p34370 Brassica napus HOM05D007154 ORTHO05D008945 1.9e-19 99.8 92 54.3
BraA06t26367Z Brassica rapa HOM05D007154 ORTHO05D008945 1.9e-19 99.8 92 54.3
Peaxi162Scf00329g00212 Petunia axillaris HOM05D007154 ORTHO05D008945 1.9e-19 99.8 89 55.1
Ciclev10016869m.g Citrus clementina HOM05D007154 ORTHO05D008945 2.5e-19 99.4 78 55.1
TWI53G1167 Tripterygium wilfordii HOM05D007154 ORTHO05D008945 4.3e-19 98.6 99 45.5
Nitab4.5_0002707g0010 Nicotiana tabacum HOM05D007154 ORTHO05D008945 5.6e-19 98.2 82 54.9
Nitab4.5_0007445g0030 Nicotiana tabacum HOM05D007154 ORTHO05D008945 5.6e-19 98.2 82 54.9
Carub.0006s2118 Capsella rubella HOM05D007154 ORTHO05D008945 9.6e-19 97.4 98 50.0
AUR62023198 Chenopodium quinoa HOM05D007154 ORTHO05D008945 9.6e-19 97.4 76 56.6
DCAR_030346 Daucus carota HOM05D007154 ORTHO05D008945 9.6e-19 97.4 97 49.5
Gohir.D04G150000 Gossypium hirsutum HOM05D007154 ORTHO05D008945 9.6e-19 97.4 90 54.4
Gorai.012G136600 Gossypium raimondii HOM05D007154 ORTHO05D008945 9.6e-19 97.4 90 54.4
SalBow4G2238 Salvia bowleyana HOM05D007154 ORTHO05D008945 9.6e-19 97.4 82 54.9
CARHR190110 Cardamine hirsuta HOM05D007154 ORTHO05D008945 1.3e-18 97.1 71 60.6
Lj3C844G3 Lonicera japonica HOM05D007154 ORTHO05D008945 1.3e-18 97.1 103 49.5
Potri.010G254600 Populus trichocarpa HOM05D007154 ORTHO05D008945 1.3e-18 97.1 98 44.9
HPP92_026886 Vanilla planifolia HOM05D007154 ORTHO05D008945 1.3e-18 97.1 78 52.6
CAN.G419.16 Capsicum annuum HOM05D007154 ORTHO05D008945 1.6e-18 96.7 84 54.8
Solyc04g008770.3 Solanum lycopersicum HOM05D007154 ORTHO05D008945 1.6e-18 96.7 84 54.8
Sopen04g003950 Solanum pennellii HOM05D007154 ORTHO05D008945 1.6e-18 96.7 84 54.8
PGSC0003DMG400025308 Solanum tuberosum HOM05D007154 ORTHO05D008945 1.6e-18 96.7 84 54.8
Sabra10G0198000 Salix brachista HOM05D007154 ORTHO05D008945 2.1e-18 96.3 78 52.6
AUR62023245 Chenopodium quinoa HOM05D007154 ORTHO05D008945 2.8e-18 95.9 78 53.8
GSVIVG01034352001 Vitis vinifera HOM05D007154 ORTHO05D008945 2.8e-18 95.9 88 52.3
Lalb_Chr01g0013651 Lupinus albus HOM05D007154 ORTHO05D008945 3.6e-18 95.5 93 51.6
Manes.04G160900 Manihot esculenta HOM05D007154 ORTHO05D008945 3.6e-18 95.5 111 43.2
Lj3g0022846 Lotus japonicus HOM05D007154 ORTHO05D008945 4.8e-18 95.1 88 53.4
Nn3g18537 Nelumbo nucifera HOM05D007154 ORTHO05D008945 4.8e-18 95.1 96 49.0
Rhsim07G0213000 Rhododendron simsii HOM05D000003 ORTHO05D008945 4.8e-18 95.1 86 53.5
Atru.chr11.40 Acer truncatum HOM05D007154 ORTHO05D008945 6.2e-18 94.7 112 44.6
Dinv01916 Davidia involucrata HOM05D007154 ORTHO05D008945 6.2e-18 94.7 99 46.5
Lsat_1_v5_gn_9_117140 Lactuca sativa HOM05D007154 ORTHO05D008945 6.2e-18 94.7 103 44.7
Medtr8g020800 Medicago truncatula HOM05D007154 ORTHO05D008945 6.2e-18 94.7 88 53.4
Sc10g0006590 Simmondsia chinensis HOM05D007154 ORTHO05D008945 6.2e-18 94.7 93 49.5
TAR371G0017 Trochodendron aralioides HOM05D007154 ORTHO05D008945 6.2e-18 94.7 78 52.6
vmacro16164 Vaccinium macrocarpon HOM05D007154 ORTHO05D008945 6.2e-18 94.7 86 47.7
MD13G1001100 Malus domestica HOM05D007154 ORTHO05D008945 8.1e-18 94.4 93 49.5
Oeu019256.1 Olea europaea HOM05D007154 ORTHO05D008945 8.1e-18 94.4 104 45.2
PGR142G2984 Punica granatum HOM05D007154 ORTHO05D008945 8.1e-18 94.4 117 41.9
EL10Ac2g04490 Beta vulgaris HOM05D007154 ORTHO05D008945 1.1e-17 94.0 98 48.0
Psat4g220160 Pisum sativum HOM05D007154 ORTHO05D008945 1.1e-17 94.0 97 48.5
ATR0124G040 Amborella trichopoda HOM05D007154 ORTHO05D008945 1.4e-17 93.6 121 43.8
Cfa018670 Carpinus fangiana HOM05D007154 ORTHO05D008945 1.4e-17 93.6 83 51.8
CSS0036440 Camellia sinensis var. sinensis HOM05D007154 ORTHO05D008945 1.8e-17 93.2 95 46.3
HPP92_003488 Vanilla planifolia HOM05D007154 ORTHO05D008945 1.8e-17 93.2 97 45.4
CDE04G0025 Ceratophyllum demersum HOM05D007154 ORTHO05D008945 2.4e-17 92.8 92 51.1
VMungo0331G0746 Vigna mungo HOM05D007154 ORTHO05D008945 2.4e-17 92.8 96 50.0
Zm00001eb427080 Zea mays HOM05D007154 ORTHO05D008945 2.4e-17 92.8 71 57.7
Cpa.g.sc221.16 Carica papaya HOM05D007154 ORTHO05D008945 3.1e-17 92.4 97 46.4
Nitab4.5_0011708g0010 Nicotiana tabacum HOM05D007154 ORTHO05D008945 3.1e-17 92.4 103 45.6
ClCG01G007940 Citrullus lanatus HOM05D007154 ORTHO05D008945 4.0e-17 92.0 78 51.3
HanXRQChr13g0420721 Helianthus annuus HOM05D007154 ORTHO05D008945 4.0e-17 92.0 103 43.7
Phvul.010G129500 Phaseolus vulgaris HOM05D007154 ORTHO05D008945 4.0e-17 92.0 111 44.1
Thecc.02G152200 Theobroma cacao HOM05D007154 ORTHO05D008945 4.0e-17 92.0 106 45.3
Ca_23384_v3 Cicer arietinum L. HOM05D007154 ORTHO05D008945 5.3e-17 91.7 100 48.0
Eucgr.G02613 Eucalyptus grandis HOM05D007154 ORTHO05D008945 5.3e-17 91.7 100 46.0
Glyma.07G039300 Glycine max HOM05D007154 ORTHO05D008945 5.3e-17 91.7 77 55.8
COL.COLO4_33150 Corchorus olitorius HOM05D007154 ORTHO05D008945 6.9e-17 91.3 100 46.0
Os04g0527700 Oryza sativa ssp. japonica HOM05D007154 ORTHO05D008945 6.9e-17 91.3 78 53.8
Aqoxy3G04335 Aquilegia oxysepala HOM05D007154 ORTHO05D008945 9.0e-17 90.9 78 51.3
MELO3C005082.2 Cucumis melo HOM05D007154 ORTHO05D008945 9.0e-17 90.9 92 50.0
CANSAT78G1733 Cannabis sativa HOM05D007154 ORTHO05D008945 1.2e-16 90.5 89 47.2
Gohir.A04G109800 Gossypium hirsutum HOM05D007154 ORTHO05D008945 1.2e-16 90.5 122 44.3
Prupe.1G351600 Prunus persica HOM05D007154 ORTHO05D008945 2.0e-16 89.7 78 50.0
Sed0008143 Sechium edule HOM05D007154 ORTHO05D008945 2.0e-16 89.7 91 48.4
CiPaw.16G000700 Carya illinoinensis HOM05D007154 ORTHO05D008945 2.6e-16 89.4 101 43.6
Zm00001eb076710 Zea mays HOM05D007154 ORTHO05D008945 2.6e-16 89.4 71 54.9
QL01p000323 Quercus lobata HOM05D007154 ORTHO05D008945 3.4e-16 89.0 109 45.0
CsaV3_5G021910 Cucumis sativus L. HOM05D007154 ORTHO05D008945 5.8e-16 88.2 78 50.0
ECA240G2562 Erigeron canadensis HOM05D007154 ORTHO05D008945 5.8e-16 88.2 122 41.0
Hund16199 Selenicereus undatus HOM05D007154 ORTHO05D008945 5.8e-16 88.2 93 45.2
FAN17G3039 Fragaria x ananassa HOM05D007154 ORTHO05D008945 7.6e-16 87.8 87 48.3
RcHm_v2.0_Chr4g0447181 Rosa chinensis HOM05D007154 ORTHO05D008945 9.9e-16 87.4 101 43.6
SGA_v2.0_scaffold166G38315 Striga asiatica HOM05D007154 ORTHO05D008945 9.9e-16 87.4 89 51.7
SGA_v2.0_scaffold249G44952 Striga asiatica HOM05D007154 ORTHO05D008945 1.3e-15 87.0 90 48.9
TAR371G0737 Trochodendron aralioides HOM05D007154 ORTHO05D008945 1.7e-15 86.7 106 41.5
FAN07G0022 Fragaria x ananassa HOM05D007154 ORTHO05D008945 2.2e-15 86.3 87 47.1
unitig_61.g26453 Utricularia gibba HOM05D007154 ORTHO05D008945 2.2e-15 86.3 103 44.7
Duzib248G1404 Durio zibethinus HOM05D007154 ORTHO05D008945 6.4e-15 84.7 75 56.0
SHI21164 Sapria himalayana HOM05D007154 ORTHO05D008945 6.4e-15 84.7 87 46.0
Glyma.16G008100 Glycine max HOM05D007154 ORTHO05D008945 3.2e-14 82.4 60 56.7
FvH4_4g37330 Fragaria vesca HOM05D007154 ORTHO05D008945 5.4e-14 81.6 66 50.0
TPR.G36620 Trifolium pratense HOM05D007154 ORTHO05D008945 5.4e-14 81.6 89 42.7
TAR627G0850 Trochodendron aralioides HOM05D007154 ORTHO05D008945 5.1e-12 75.1 81 48.1
MCO07G261 Micromonas commoda HOM05D007154 ORTHO05D008945 2.4e-09 66.2 82 35.4
AagrBONN_evm.TU.Sc2ySwM_362.2201 Anthoceros agrestis HOM05D007154 ORTHO05D008945 1.2e-08 63.9 85 40.0
Mapoly0093s0036 Marchantia polymorpha HOM05D007154 ORTHO05D008945 2.0e-08 63.2 131 30.5
Duzib051G0001 Durio zibethinus HOM05D007154 ORTHO05D008945 2.6e-08 62.8 53 56.6
Haze_17398 Corylus avellana HOM05D007154 ORTHO05D008945 6.4e-07 58.2 103 34.0
SEGI_35140 Sequoiadendron giganteum HOM05D007154 ORTHO05D008945 1.4e-06 57.0 53 49.1
Cfa026739 Carpinus fangiana HOM05D007154 ORTHO05D008945 1.9e-06 56.6 95 33.7
TAR622G0969 Trochodendron aralioides HOM05D007154 ORTHO05D008945 4.2e-06 55.5 107 31.8


User provided reference genes

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