Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_16920 Physcomitrium patens HOM05D020471 ORTHO05D021324 3.8e-76 288.1 149 100.0
Pp3c7_11120 Physcomitrium patens HOM05D020471 ORTHO05D021324 4.0e-65 251.5 144 93.1
Mapoly0811s0001 Marchantia polymorpha HOM05D020471 ORTHO05D021324 4.9e-47 191.4 142 75.4
AagrBONN_evm.TU.Sc2ySwM_344.4721 Anthoceros agrestis HOM05D020471 ORTHO05D021324 2.0e-45 186.0 132 81.1
SMO340G0287 Selaginella moellendorffii HOM05D020471 ORTHO05D021324 1.1e-30 137.1 98 74.5
SMO240G0017 Selaginella moellendorffii HOM05D020471 ORTHO05D021324 6.6e-28 127.9 111 65.8
Sabra12G0026600 Salix brachista HOM05D001251 ORTHO05D000619 5.8e-08 61.6 65 44.6
PGSC0003DMG400025632 Solanum tuberosum HOM05D001251 ORTHO05D000619 1.7e-07 60.1 65 44.6
Oeu061198.1 Olea europaea HOM05D001251 ORTHO05D000619 2.2e-07 59.7 49 55.1
Solyc03g098320.4 Solanum lycopersicum HOM05D001251 ORTHO05D000619 2.2e-07 59.7 65 44.6
Nitab4.5_0001180g0220 Nicotiana tabacum HOM05D001251 ORTHO05D000619 2.9e-07 59.3 65 46.2
Nitab4.5_0004614g0010 Nicotiana tabacum HOM05D001251 ORTHO05D000619 2.9e-07 59.3 65 46.2
Peaxi162Scf00171g00419 Petunia axillaris HOM05D001251 ORTHO05D000619 2.9e-07 59.3 65 46.2
Potri.012G038300 Populus trichocarpa HOM05D001251 ORTHO05D000619 3.8e-07 58.9 65 43.1
Sopen03g029070 Solanum pennellii HOM05D001251 ORTHO05D000619 6.4e-07 58.2 65 43.1
CAN.G1631.9 Capsicum annuum HOM05D008697 ORTHO05D010866 1.1e-06 57.4 54 46.3
Atru.chr9.1574 Acer truncatum HOM05D001251 ORTHO05D000619 1.4e-06 57.0 49 46.9
Cc04_g08830 Coffea canephora HOM05D001251 ORTHO05D000619 1.4e-06 57.0 49 51.0
MELO3C001962.2 Cucumis melo HOM05D001251 ORTHO05D000619 1.4e-06 57.0 74 39.2
Hma1.2p1_0493F.1_g165020 Hydrangea macrophylla HOM05D001251 ORTHO05D000619 1.4e-06 57.0 49 46.9
Actinidia28783 Actinidia chinensis HOM05D001251 ORTHO05D000619 1.9e-06 56.6 65 41.5
CsaV3_1G005230 Cucumis sativus L. HOM05D001251 ORTHO05D000619 1.9e-06 56.6 56 42.9
Dinv28239 Davidia involucrata HOM05D001251 ORTHO05D000619 1.9e-06 56.6 65 40.0
Sed0027965 Sechium edule HOM05D001251 ORTHO05D000619 1.9e-06 56.6 49 46.9
CANSAT01G0250 Cannabis sativa HOM05D001251 ORTHO05D000619 2.4e-06 56.2 48 47.9
Haze_18989 Corylus avellana HOM05D001251 ORTHO05D000619 2.4e-06 56.2 71 38.0
Glyma.18G044200 Glycine max HOM05D001251 ORTHO05D000619 2.4e-06 56.2 49 46.9
Sed0013817 Sechium edule HOM05D001251 ORTHO05D000619 2.4e-06 56.2 49 46.9
TWI81G1017 Tripterygium wilfordii HOM05D001251 ORTHO05D000619 2.4e-06 56.2 49 44.9
Actinidia17165 Actinidia chinensis HOM05D001251 ORTHO05D000619 3.2e-06 55.8 65 41.5
Cpa.g.sc7.134 Carica papaya HOM05D001251 ORTHO05D000619 3.2e-06 55.8 49 44.9
Ciclev10020130m.g Citrus clementina HOM05D001251 ORTHO05D000619 3.2e-06 55.8 56 42.9
Sabra15G0025400 Salix brachista HOM05D001251 ORTHO05D000619 3.2e-06 55.8 65 41.5
Hund22210 Selenicereus undatus HOM05D001251 ORTHO05D000619 3.2e-06 55.8 65 40.0
Sopen02g011740 Solanum pennellii HOM05D001251 ORTHO05D000619 3.2e-06 55.8 65 40.0
unitig_22.g5436 Utricularia gibba HOM05D001251 ORTHO05D000619 3.2e-06 55.8 55 45.5
Actinidia40418 Actinidia chinensis HOM05D001251 ORTHO05D000619 4.2e-06 55.5 65 40.0
MSTRG.15639 Avicennia marina HOM05D001251 ORTHO05D000619 4.2e-06 55.5 65 40.0
CANSAT56G2016 Cannabis sativa HOM05D001251 ORTHO05D000619 4.2e-06 55.5 52 42.3
Glyma.16G217700 Glycine max HOM05D001251 ORTHO05D000619 4.2e-06 55.5 56 39.3
Gohir.D07G066100 Gossypium hirsutum HOM05D001251 ORTHO05D000619 4.2e-06 55.5 49 44.9
Gorai.001G069700 Gossypium raimondii HOM05D001251 ORTHO05D000619 4.2e-06 55.5 49 44.9
HanXRQChr12g0365781 Helianthus annuus HOM05D001251 ORTHO05D000619 4.2e-06 55.5 57 40.4
Lj6g0016864 Lotus japonicus HOM05D001251 ORTHO05D000619 4.2e-06 55.5 59 42.4
Lalb_Chr24g0398451 Lupinus albus HOM05D001251 ORTHO05D000619 4.2e-06 55.5 49 42.9
Phvul.004G143400 Phaseolus vulgaris HOM05D001251 ORTHO05D000619 4.2e-06 55.5 56 39.3
VMungo0464G1223 Vigna mungo HOM05D001251 ORTHO05D000619 4.2e-06 55.5 56 39.3
arahy.Tifrunner.gnm1.ann1.V5MJQ5 Arachis hypogaea HOM05D001251 ORTHO05D000619 5.5e-06 55.1 56 39.3
Glyma.02G241000 Glycine max HOM05D001251 ORTHO05D000619 5.5e-06 55.1 53 41.5
Lj4A253G30 Lonicera japonica HOM05D001251 ORTHO05D000619 5.5e-06 55.1 49 44.9
Lalb_Chr22g0353751 Lupinus albus HOM05D001251 ORTHO05D000619 5.5e-06 55.1 55 40.0
Nn4g24695 Nelumbo nucifera HOM05D001251 ORTHO05D000619 5.5e-06 55.1 65 40.0
Nitab4.5_0004821g0020 Nicotiana tabacum HOM05D001251 ORTHO05D000619 5.5e-06 55.1 65 38.5
Nitab4.5_0009714g0010 Nicotiana tabacum HOM05D001251 ORTHO05D000619 5.5e-06 55.1 65 38.5
Peaxi162Scf00358g00058 Petunia axillaris HOM05D001251 ORTHO05D000619 5.5e-06 55.1 91 34.1
Potri.004G074300 Populus trichocarpa HOM05D001251 ORTHO05D000619 5.5e-06 55.1 65 38.5
PRCOL_00004621 Prasinoderma coloniale HOM05D001251 ORTHO05D001364 5.5e-06 55.1 68 42.6
Sabra17G0121300 Salix brachista HOM05D001251 ORTHO05D000619 5.5e-06 55.1 65 38.5
TPR.G26665 Trifolium pratense HOM05D001251 ORTHO05D000619 5.5e-06 55.1 49 44.9
Ah.04g162960 Amaranthus hybridus HOM05D001251 ORTHO05D000619 7.1e-06 54.7 49 44.9
ATR0807G202 Amborella trichopoda HOM05D001251 ORTHO05D000619 7.1e-06 54.7 54 42.6
CiPaw.16G100600 Carya illinoinensis HOM05D001251 ORTHO05D000619 7.1e-06 54.7 54 42.6
Ciclev10011554m.g Citrus clementina HOM05D001251 ORTHO05D000619 7.1e-06 54.7 49 44.9
Gohir.A07G061400 Gossypium hirsutum HOM05D001251 ORTHO05D000619 7.1e-06 54.7 49 44.9
Oeu009446.1 Olea europaea HOM05D001251 ORTHO05D000619 7.1e-06 54.7 65 40.0
Sabra04G0049000 Salix brachista HOM05D001251 ORTHO05D000619 7.1e-06 54.7 65 38.5
Sc09g0004520 Simmondsia chinensis HOM05D001251 ORTHO05D000619 7.1e-06 54.7 49 46.9
TPR.G39688 Trifolium pratense HOM05D001251 ORTHO05D000619 7.1e-06 54.7 49 46.9
arahy.Tifrunner.gnm1.ann1.6FS9GU Arachis hypogaea HOM05D001251 ORTHO05D000619 9.3e-06 54.3 49 42.9
arahy.Tifrunner.gnm1.ann1.85WIHV Arachis hypogaea HOM05D001251 ORTHO05D000619 9.3e-06 54.3 49 42.9
CSS0046011 Camellia sinensis var. sinensis HOM05D001251 ORTHO05D000619 9.3e-06 54.3 65 40.0
AUR62037488 Chenopodium quinoa HOM05D001251 ORTHO05D000619 9.3e-06 54.3 53 43.4
Ca_18565_v3 Cicer arietinum L. HOM05D001251 ORTHO05D000619 9.3e-06 54.3 56 37.5
COL.COLO4_22336 Corchorus olitorius HOM05D001251 ORTHO05D000619 9.3e-06 54.3 49 42.9
DCAR_023259 Daucus carota HOM05D001251 ORTHO05D000619 9.3e-06 54.3 49 44.9
Duzib068G1325 Durio zibethinus HOM05D001251 ORTHO05D000619 9.3e-06 54.3 49 42.9
Migut.O00255 Erythranthe guttata HOM05D001251 ORTHO05D000619 9.3e-06 54.3 49 46.9
Medtr3g064500 Medicago truncatula HOM05D001251 ORTHO05D000619 9.3e-06 54.3 53 41.5
MCO14G255 Micromonas commoda HOM05D001251 ORTHO05D000619 9.3e-06 54.3 54 44.4
SalBow5G1283 Salvia bowleyana HOM05D001251 ORTHO05D000619 9.3e-06 54.3 73 38.4
SGA_v2.0_scaffold90G27769 Striga asiatica HOM05D001251 ORTHO05D000619 9.3e-06 54.3 49 49.0
Thecc.03G069300 Theobroma cacao HOM05D001251 ORTHO05D000619 9.3e-06 54.3 49 42.9
TWI74G0904 Tripterygium wilfordii HOM05D001251 ORTHO05D000619 9.3e-06 54.3 65 38.5
VMungo0647G1447 Vigna mungo HOM05D001251 ORTHO05D000619 9.3e-06 54.3 49 42.9


User provided reference genes

Program Settings