Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_14700 Physcomitrium patens HOM05D003634 ORTHO05D004146 1.3e-66 256.1 124 100.0
Pp3c2_23590 Physcomitrium patens HOM05D003634 ORTHO05D004146 2.2e-32 142.5 85 84.7
Pp3c11_12080 Physcomitrium patens HOM05D003634 ORTHO05D004146 3.7e-32 141.7 85 84.7
Pp3c7_12850 Physcomitrium patens HOM05D003634 ORTHO05D004146 3.7e-32 141.7 85 82.4
Pp3c11_11560 Physcomitrium patens HOM05D003634 ORTHO05D004146 1.6e-30 136.3 85 81.2
Pp3c1_16780 Physcomitrium patens HOM05D003634 ORTHO05D004146 2.2e-29 132.5 85 76.5
Lalb_Chr17g0348121 Lupinus albus HOM05D003634 ORTHO05D004146 3.1e-23 112.1 85 65.9
SEGI_24342 Sequoiadendron giganteum HOM05D003634 ORTHO05D004146 3.1e-23 112.1 85 67.1
ClCG07G010800 Citrullus lanatus HOM05D003634 ORTHO05D004146 5.3e-23 111.3 85 67.1
Prupe.3G179400 Prunus persica HOM05D003634 ORTHO05D004146 9.1e-23 110.5 85 65.9
AL1G16690 Arabidopsis lyrata HOM05D003634 ORTHO05D004146 2.7e-22 109.0 85 65.9
AT1G06680 Arabidopsis thaliana HOM05D003634 ORTHO05D004146 2.7e-22 109.0 85 65.9
Phvul.008G196500 Phaseolus vulgaris HOM05D003634 ORTHO05D004146 2.7e-22 109.0 85 64.7
Duzib264G1267 Durio zibethinus HOM05D003634 ORTHO05D004146 3.5e-22 108.6 85 65.9
Lj8C98T13 Lonicera japonica HOM05D003634 ORTHO05D004146 4.5e-22 108.2 85 64.7
Carub.0001s0601 Capsella rubella HOM05D003634 ORTHO05D004146 5.9e-22 107.8 85 65.9
Aqoxy1G01593 Aquilegia oxysepala HOM05D003634 ORTHO05D004146 7.7e-22 107.5 85 62.4
Cpa.g.sc187.7 Carica papaya HOM05D003634 ORTHO05D004146 7.7e-22 107.5 85 64.7
MD17G1132900 Malus domestica HOM05D003634 ORTHO05D004146 7.7e-22 107.5 85 63.5
Mapoly0094s0007 Marchantia polymorpha HOM05D003634 ORTHO05D004146 7.7e-22 107.5 85 62.4
A08p35900 Brassica napus HOM05D003634 ORTHO05D004146 1.0e-21 107.1 85 65.9
C05p04870 Brassica napus HOM05D003634 ORTHO05D004146 1.0e-21 107.1 85 65.9
C08p02670 Brassica napus HOM05D003634 ORTHO05D004146 1.0e-21 107.1 85 65.9
BolC5t29259H Brassica oleracea HOM05D003634 ORTHO05D004146 1.0e-21 107.1 85 65.9
BolC8t47063H Brassica oleracea HOM05D003634 ORTHO05D004146 1.0e-21 107.1 85 65.9
BraA08t35497Z Brassica rapa HOM05D003634 ORTHO05D004146 1.0e-21 107.1 85 65.9
FvH4_6g38900 Fragaria vesca HOM05D003634 ORTHO05D004146 1.0e-21 107.1 85 62.4
FAN02G0185 Fragaria x ananassa HOM05D003634 ORTHO05D004146 1.0e-21 107.1 85 62.4
FAN05G3719 Fragaria x ananassa HOM05D003634 ORTHO05D004146 1.0e-21 107.1 85 62.4
FAN09G2615 Fragaria x ananassa HOM05D003634 ORTHO05D004146 1.0e-21 107.1 85 62.4
FAN14G5409 Fragaria x ananassa HOM05D003634 ORTHO05D004146 1.0e-21 107.1 85 62.4
Glyma.08G304200 Glycine max HOM05D003634 ORTHO05D004146 1.0e-21 107.1 85 62.4
Rhsim12G0013500 Rhododendron simsii HOM05D003634 ORTHO05D004146 1.0e-21 107.1 85 63.5
BcaNung05935 Brassica carinata HOM05D003634 ORTHO05D004146 1.3e-21 106.7 85 64.7
CARHR006360 Cardamine hirsuta HOM05D003634 ORTHO05D004146 1.3e-21 106.7 85 64.7
Lsat_1_v5_gn_3_35220 Lactuca sativa HOM05D003634 ORTHO05D004146 1.3e-21 106.7 85 62.4
VMungo0540G1926 Vigna mungo HOM05D003634 ORTHO05D004146 1.3e-21 106.7 85 63.5
BcaC07g42054 Brassica carinata HOM05D003634 ORTHO05D004146 1.7e-21 106.3 85 65.9
A09p66850 Brassica napus HOM05D003634 ORTHO05D004146 1.7e-21 106.3 85 65.9
A10p05270 Brassica napus HOM05D003634 ORTHO05D004146 1.7e-21 106.3 85 65.9
C08p51070 Brassica napus HOM05D003634 ORTHO05D004146 1.7e-21 106.3 85 65.9
BolC8t52634H Brassica oleracea HOM05D003634 ORTHO05D004146 1.7e-21 106.3 85 65.9
BraA09t42022Z Brassica rapa HOM05D003634 ORTHO05D004146 1.7e-21 106.3 85 65.9
BraA10t42792Z Brassica rapa HOM05D003634 ORTHO05D004146 1.7e-21 106.3 85 65.9
Lalb_Chr10g0106481 Lupinus albus HOM05D003634 ORTHO05D004146 1.7e-21 106.3 85 64.7
Manes.02G089900 Manihot esculenta HOM05D003634 ORTHO05D004146 1.7e-21 106.3 85 65.9
Sed0008663 Sechium edule HOM05D003634 ORTHO05D004146 1.7e-21 106.3 85 67.1
TWI23G0402 Tripterygium wilfordii HOM05D003634 ORTHO05D004146 1.7e-21 106.3 79 67.1
MELO3C016190.2 Cucumis melo HOM05D003634 ORTHO05D004146 2.2e-21 105.9 85 64.7
CsaV3_4G007520 Cucumis sativus L. HOM05D003634 ORTHO05D004146 2.2e-21 105.9 85 64.7
Glyma.18G114900 Glycine max HOM05D003634 ORTHO05D004146 2.2e-21 105.9 85 62.4
Lalb_Chr04g0249011 Lupinus albus HOM05D003634 ORTHO05D004146 2.2e-21 105.9 85 64.7
QL08p045530 Quercus lobata HOM05D003634 ORTHO05D004146 2.2e-21 105.9 84 63.1
RcHm_v2.0_Chr2g0152481 Rosa chinensis HOM05D003634 ORTHO05D004146 2.2e-21 105.9 85 62.4
TWI14G0595 Tripterygium wilfordii HOM05D003634 ORTHO05D004146 2.2e-21 105.9 85 62.4
Sed0027030 Sechium edule HOM05D003634 ORTHO05D004146 2.9e-21 105.5 85 65.9
HPP92_015688 Vanilla planifolia HOM05D003634 ORTHO05D004146 2.9e-21 105.5 93 58.1
Manes.01G131300 Manihot esculenta HOM05D003634 ORTHO05D004146 3.8e-21 105.1 85 64.7
Medtr5g090410 Medicago truncatula HOM05D003634 ORTHO05D004146 3.8e-21 105.1 85 62.4
Nitab4.5_0005601g0020 Nicotiana tabacum HOM05D003634 ORTHO05D004146 3.8e-21 105.1 85 64.7
Phvul.006G027801 Phaseolus vulgaris HOM05D003634 ORTHO05D004146 3.8e-21 105.1 85 62.4
TPR.G8779 Trifolium pratense HOM05D003634 ORTHO05D004146 3.8e-21 105.1 85 62.4
vmacro08742 Vaccinium macrocarpon HOM05D003634 ORTHO05D004146 3.8e-21 105.1 85 62.4
Aa31LG5G6070 Aethionema arabicum HOM05D003634 ORTHO05D004146 5.0e-21 104.8 85 62.4
COL.COLO4_29888 Corchorus olitorius HOM05D003634 ORTHO05D004146 5.0e-21 104.8 85 63.5
ECA246G2888 Erigeron canadensis HOM05D003634 ORTHO05D004146 5.0e-21 104.8 85 62.4
Gohir.A05G380700 Gossypium hirsutum HOM05D003634 ORTHO05D004146 5.0e-21 104.8 85 63.5
Gohir.D04G034900 Gossypium hirsutum HOM05D003634 ORTHO05D004146 5.0e-21 104.8 85 63.5
Gorai.012G039400 Gossypium raimondii HOM05D003634 ORTHO05D004146 5.0e-21 104.8 85 63.5
MD09G1146300 Malus domestica HOM05D003634 ORTHO05D004146 5.0e-21 104.8 85 62.4
Psat5g189160 Pisum sativum HOM05D003634 ORTHO05D004146 5.0e-21 104.8 85 62.4
CANSAT64G2967 Cannabis sativa HOM05D003634 ORTHO05D004146 6.5e-21 104.4 85 61.2
CiPaw.04G137000 Carya illinoinensis HOM05D003634 ORTHO05D004146 6.5e-21 104.4 85 63.5
DCAR_023039 Daucus carota HOM05D003634 ORTHO05D004146 6.5e-21 104.4 85 62.4
Thhalv10008504m.g Eutrema salsugineum HOM05D003634 ORTHO05D004146 6.5e-21 104.4 85 64.7
Potri.002G055700 Populus trichocarpa HOM05D003634 ORTHO05D004146 6.5e-21 104.4 85 62.4
Sabra05G0157200 Salix brachista HOM05D003634 ORTHO05D004146 6.5e-21 104.4 85 62.4
Aa31LG1G7720 Aethionema arabicum HOM05D003634 ORTHO05D004146 8.5e-21 104.0 85 63.5
CAN.G488.26 Capsicum annuum HOM05D003634 ORTHO05D004146 8.5e-21 104.0 85 63.5
Gohir.A10G151800 Gossypium hirsutum HOM05D003634 ORTHO05D004146 8.5e-21 104.0 85 62.4
Gohir.D10G114500 Gossypium hirsutum HOM05D003634 ORTHO05D004146 8.5e-21 104.0 85 62.4
Gorai.011G126200 Gossypium raimondii HOM05D003634 ORTHO05D004146 8.5e-21 104.0 85 62.4
Sp1g05410 Schrenkiella parvula HOM05D003634 ORTHO05D004146 8.5e-21 104.0 85 64.7
Ah.02g120770 Amaranthus hybridus HOM05D003634 ORTHO05D004146 1.1e-20 103.6 85 61.2
HanXRQChr05g0129681 Helianthus annuus HOM05D003634 ORTHO05D004146 1.1e-20 103.6 85 63.5
Peaxi162Scf00359g01218 Petunia axillaris HOM05D003634 ORTHO05D004146 1.1e-20 103.6 85 62.4
SMO276G0004 Selaginella moellendorffii HOM05D003634 ORTHO05D004146 1.1e-20 103.6 85 61.2
Hund04362 Selenicereus undatus HOM05D003634 ORTHO05D004146 1.1e-20 103.6 85 62.4
Solyc07g044860.3 Solanum lycopersicum HOM05D003634 ORTHO05D004146 1.1e-20 103.6 85 63.5
Sopen07g023420 Solanum pennellii HOM05D003634 ORTHO05D004146 1.1e-20 103.6 85 63.5
PGSC0003DMG400000926 Solanum tuberosum HOM05D003634 ORTHO05D004146 1.1e-20 103.6 85 63.5
Migut.H01272 Erythranthe guttata HOM05D003634 ORTHO05D004146 1.5e-20 103.2 85 64.7
Eucgr.A02039 Eucalyptus grandis HOM05D003634 ORTHO05D004146 1.5e-20 103.2 85 60.0
HanXRQChr04g0099261 Helianthus annuus HOM05D003634 ORTHO05D004146 1.5e-20 103.2 85 62.4
HanXRQChr06g0171591 Helianthus annuus HOM05D003634 ORTHO05D004146 1.5e-20 103.2 85 62.4
PGR042G1985 Punica granatum HOM05D003634 ORTHO05D004146 1.5e-20 103.2 85 62.4
Actinidia12527 Actinidia chinensis HOM05D003634 ORTHO05D004146 1.9e-20 102.8 131 47.3
Cfa023023 Carpinus fangiana HOM05D003634 ORTHO05D004146 1.9e-20 102.8 85 61.2
AUR62003524 Chenopodium quinoa HOM05D003634 ORTHO05D004146 1.9e-20 102.8 85 61.2
Haze_13608 Corylus avellana HOM05D003634 ORTHO05D004146 1.9e-20 102.8 93 59.1
DCAR_009820 Daucus carota HOM05D003634 ORTHO05D004146 1.9e-20 102.8 85 62.4
THA.LOC104816082 Tarenaya hassleriana HOM05D003634 ORTHO05D004146 1.9e-20 102.8 85 62.4
arahy.Tifrunner.gnm1.ann1.30A6BG Arachis hypogaea HOM05D003634 ORTHO05D004146 2.5e-20 102.4 85 62.4
arahy.Tifrunner.gnm1.ann1.MMUF9T Arachis hypogaea HOM05D003634 ORTHO05D004146 2.5e-20 102.4 85 61.2
MSTRG.14106 Avicennia marina HOM05D003634 ORTHO05D004146 2.5e-20 102.4 85 61.2
AUR62017838 Chenopodium quinoa HOM05D003634 ORTHO05D004146 2.5e-20 102.4 85 60.0
ECA234G0286 Erigeron canadensis HOM05D003634 ORTHO05D004146 2.5e-20 102.4 85 61.2
Lj6g0020294 Lotus japonicus HOM05D003634 ORTHO05D004146 2.5e-20 102.4 85 61.2
MBI02_g35794_MAGBIO Magnolia biondii HOM05D003634 ORTHO05D004146 2.5e-20 102.4 85 61.2
Psat2g018280 Pisum sativum HOM05D003634 ORTHO05D004146 2.5e-20 102.4 85 61.2
Atru.chr6.2016 Acer truncatum HOM05D003634 ORTHO05D004146 3.2e-20 102.1 85 63.5
Ah.03g147560 Amaranthus hybridus HOM05D003634 ORTHO05D004146 3.2e-20 102.1 85 58.8
arahy.Tifrunner.gnm1.ann1.0DED4Z Arachis hypogaea HOM05D003634 ORTHO05D004146 3.2e-20 102.1 85 61.2
arahy.Tifrunner.gnm1.ann1.TCR54Y Arachis hypogaea HOM05D003634 ORTHO05D004146 3.2e-20 102.1 85 61.2
Lj1A651T46 Lonicera japonica HOM05D003634 ORTHO05D004146 3.2e-20 102.1 85 63.5
Os07g0141400 Oryza sativa ssp. japonica HOM05D003634 ORTHO05D004146 3.2e-20 102.1 85 60.0
Potri.005G206700 Populus trichocarpa HOM05D003634 ORTHO05D004146 3.2e-20 102.1 85 62.4
SGA_v2.0_scaffold49G18386 Striga asiatica HOM05D003634 ORTHO05D004146 3.2e-20 102.1 85 63.5
THA.LOC104826247 Tarenaya hassleriana HOM05D003634 ORTHO05D004146 3.2e-20 102.1 85 62.4
EL10Ac6g15357 Beta vulgaris HOM05D003634 ORTHO05D004146 4.2e-20 101.7 85 60.0
LjContig00049g0021127 Lotus japonicus HOM05D003634 ORTHO05D004146 4.2e-20 101.7 85 61.2
Oeu056847.1 Olea europaea HOM05D003634 ORTHO05D004146 4.2e-20 101.7 85 61.2
PSO541G1729 Papaver somniferum HOM05D003634 ORTHO05D004146 4.2e-20 101.7 85 63.5
PSO675G5089 Papaver somniferum HOM05D003634 ORTHO05D004146 4.2e-20 101.7 85 63.5
TPR.G14744 Trifolium pratense HOM05D003634 ORTHO05D004146 4.2e-20 101.7 85 61.2
Actinidia07505 Actinidia chinensis HOM05D003634 ORTHO05D004146 5.5e-20 101.3 85 60.0
MSTRG.12265 Avicennia marina HOM05D003634 ORTHO05D004146 5.5e-20 101.3 85 61.2
BcaC02g11165 Brassica carinata HOM05D003634 ORTHO05D004146 5.5e-20 101.3 85 62.4
A05p14800 Brassica napus HOM05D003634 ORTHO05D004146 5.5e-20 101.3 85 62.4
C04p19800 Brassica napus HOM05D003634 ORTHO05D004146 5.5e-20 101.3 85 62.4
BolC4t23513H Brassica oleracea HOM05D003634 ORTHO05D004146 5.5e-20 101.3 85 62.4
Migut.M00114 Erythranthe guttata HOM05D003634 ORTHO05D004146 5.5e-20 101.3 79 65.8
Glyma.02G282500 Glycine max HOM05D003634 ORTHO05D004146 5.5e-20 101.3 85 60.0
Glyma.14G031800 Glycine max HOM05D003634 ORTHO05D004146 5.5e-20 101.3 85 60.0
Mapoly0058s0006 Marchantia polymorpha HOM05D003634 ORTHO05D004146 5.5e-20 101.3 85 60.0
Medtr3g449930 Medicago truncatula HOM05D003634 ORTHO05D004146 5.5e-20 101.3 85 60.0
Sabra02G0045200 Salix brachista HOM05D003634 ORTHO05D004146 5.5e-20 101.3 85 58.8
AL4G25720 Arabidopsis lyrata HOM05D003634 ORTHO05D004146 7.2e-20 100.9 85 61.2
AT2G30790 Arabidopsis thaliana HOM05D003634 ORTHO05D004146 7.2e-20 100.9 85 61.2
BcaB02g10342 Brassica carinata HOM05D003634 ORTHO05D004146 7.2e-20 100.9 85 61.2
Carub.0004s1200 Capsella rubella HOM05D003634 ORTHO05D004146 7.2e-20 100.9 85 61.2
CAN.G212.2 Capsicum annuum HOM05D003634 ORTHO05D004146 7.2e-20 100.9 85 61.2
Cc05_g00840 Coffea canephora HOM05D003634 ORTHO05D004146 7.2e-20 100.9 85 60.0
Thhalv10017096m.g Eutrema salsugineum HOM05D003634 ORTHO05D004146 7.2e-20 100.9 85 61.2
Oeu012357.1 Olea europaea HOM05D003634 ORTHO05D004146 7.2e-20 100.9 85 60.0
Sc07g0004260 Simmondsia chinensis HOM05D003634 ORTHO05D004146 7.2e-20 100.9 85 58.8
THA.LOC104800813 Tarenaya hassleriana HOM05D003634 ORTHO05D004146 7.2e-20 100.9 85 63.5
BraA05t20408Z Brassica rapa HOM05D003634 ORTHO05D004146 1.2e-19 100.1 85 61.2
Ca_13941_v3 Cicer arietinum L. HOM05D003634 ORTHO05D004146 1.2e-19 100.1 85 61.2
MBI18_g28201_MAGBIO Magnolia biondii HOM05D003634 ORTHO05D004146 1.2e-19 100.1 85 60.0
Nitab4.5_0000019g0250 Nicotiana tabacum HOM05D003634 ORTHO05D004146 1.2e-19 100.1 85 60.0
Nitab4.5_0006644g0080 Nicotiana tabacum HOM05D003634 ORTHO05D004146 1.2e-19 100.1 85 62.4
Thecc.01G166600 Theobroma cacao HOM05D003634 ORTHO05D004146 1.2e-19 100.1 85 60.0
CARHR124260 Cardamine hirsuta HOM05D003634 ORTHO05D004146 1.6e-19 99.8 85 60.0
Zm00001eb299760 Zea mays HOM05D003634 ORTHO05D004146 1.6e-19 99.8 85 61.2
Hma1.2p1_0571F.1_g180910 Hydrangea macrophylla HOM05D003634 ORTHO05D004146 2.1e-19 99.4 85 60.0
SalBow7G4383 Salvia bowleyana HOM05D003634 ORTHO05D004146 2.1e-19 99.4 85 60.0
GSVIVG01020818001 Vitis vinifera HOM05D003634 ORTHO05D004146 2.7e-19 99.0 85 57.6
unitig_8.g4601 Utricularia gibba HOM05D003634 ORTHO05D004146 3.6e-19 98.6 85 60.0
arahy.Tifrunner.gnm1.ann1.1944SK Arachis hypogaea HOM05D003634 ORTHO05D004146 4.7e-19 98.2 82 59.8
CSS0028528 Camellia sinensis var. sinensis HOM05D003634 ORTHO05D004146 4.7e-19 98.2 85 60.0
PGR142G4178 Punica granatum HOM05D003634 ORTHO05D004146 6.1e-19 97.8 85 60.0
CDE04G2981 Ceratophyllum demersum HOM05D003634 ORTHO05D004146 8.0e-19 97.4 85 56.5
Zm00001eb117670 Zea mays HOM05D003634 ORTHO05D004146 8.0e-19 97.4 85 60.0
BcaC07g36796 Brassica carinata HOM05D003634 ORTHO05D004146 1.4e-18 96.7 69 68.1
CDE12G0092 Ceratophyllum demersum HOM05D003634 ORTHO05D004146 1.4e-18 96.7 85 56.5
unitig_52.g17321 Utricularia gibba HOM05D003634 ORTHO05D004146 1.4e-18 96.7 85 60.0
Nitab4.5_0008321g0040 Nicotiana tabacum HOM05D003634 ORTHO05D004146 3.0e-18 95.5 95 56.8
Mapoly0058s0007 Marchantia polymorpha HOM05D003634 ORTHO05D004146 4.0e-18 95.1 85 56.5
MCO12G360 Micromonas commoda HOM05D003634 ORTHO05D004146 1.2e-17 93.6 85 56.5
Actinidia07504 Actinidia chinensis HOM05D003634 ORTHO05D004146 1.5e-17 93.2 103 53.4
Ciclev10032502m.g Citrus clementina HOM05D003634 ORTHO05D004146 2.0e-17 92.8 85 61.2
ATR0681G398 Amborella trichopoda HOM05D003634 ORTHO05D004146 2.6e-17 92.4 75 61.3
PRCOL_00005580 Prasinoderma coloniale HOM05D003634 ORTHO05D004146 3.1e-15 85.5 85 51.8
Actinidia12528 Actinidia chinensis HOM05D003634 ORTHO05D004146 5.4e-15 84.7 84 54.8
VMungo0647G2531 Vigna mungo HOM05D003634 ORTHO05D004146 3.5e-14 82.0 65 64.6
CBR_g259 Chara braunii HOM05D003634 ORTHO05D004146 8.5e-13 77.4 71 49.3
Cre12.g550850 Chlamydomonas reinhardtii HOM05D003634 ORTHO05D004146 4.7e-11 71.6 87 44.8
Sp4g13290 Schrenkiella parvula HOM05D003634 ORTHO05D004146 8.0e-11 70.9 83 47.0


User provided reference genes

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