Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_14610 Physcomitrium patens HOM05D003460 ORTHO05D004277 5.5e-223 777.3 391 100.0
Pp3c24_11620 Physcomitrium patens HOM05D003460 ORTHO05D004277 2.9e-200 701.8 366 96.4
Pp3c8_17600 Physcomitrium patens HOM05D003460 ORTHO05D004277 3.2e-175 618.6 366 84.4
Mapoly0018s0023 Marchantia polymorpha HOM05D003460 ORTHO05D004277 2.8e-118 429.5 397 57.4
MapolyY_A0045 Marchantia polymorpha HOM05D003460 ORTHO05D004277 8.1e-118 427.9 392 57.4
SMO147G0395 Selaginella moellendorffii HOM05D003460 ORTHO05D004277 2.2e-99 366.7 366 52.7
SEGI_03490 Sequoiadendron giganteum HOM05D003460 ORTHO05D004277 1.4e-93 347.4 405 48.4
ATR0680G344 Amborella trichopoda HOM05D003460 ORTHO05D004277 2.7e-89 333.2 380 50.3
Aqoxy7G00308 Aquilegia oxysepala HOM05D003460 ORTHO05D004277 2.8e-86 323.2 380 47.1
Dinv32483 Davidia involucrata HOM05D003460 ORTHO05D004277 1.8e-85 320.5 381 46.2
Nn1g01533 Nelumbo nucifera HOM05D003460 ORTHO05D004277 4.1e-85 319.3 376 46.3
TWI59G0279 Tripterygium wilfordii HOM05D003460 ORTHO05D004277 5.3e-85 318.9 380 45.8
Manes.05G034300 Manihot esculenta HOM05D003460 ORTHO05D004277 9.1e-85 318.2 381 46.5
COL.COLO4_12713 Corchorus olitorius HOM05D003460 ORTHO05D004277 7.7e-84 315.1 380 45.0
Thecc.01G359000 Theobroma cacao HOM05D003460 ORTHO05D004277 1.0e-83 314.7 380 46.3
RcHm_v2.0_Chr1g0355261 Rosa chinensis HOM05D003460 ORTHO05D004277 1.7e-83 313.9 380 44.5
TAR636G2440 Trochodendron aralioides HOM05D003460 ORTHO05D004277 1.7e-83 313.9 381 47.0
CSS0048858 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 3.8e-83 312.8 372 46.0
Prupe.2G170500 Prunus persica HOM05D003460 ORTHO05D004277 6.5e-83 312.0 380 45.5
vmacro13290 Vaccinium macrocarpon HOM05D003460 ORTHO05D004277 1.9e-82 310.5 382 44.0
CANSAT56G1950 Cannabis sativa HOM05D003460 ORTHO05D004277 5.5e-82 308.9 382 44.8
Cfa003927 Carpinus fangiana HOM05D003460 ORTHO05D004277 9.4e-82 308.1 387 44.7
Haze_15503 Corylus avellana HOM05D003460 ORTHO05D004277 1.2e-81 307.8 387 43.9
Potri.002G159900 Populus trichocarpa HOM05D003460 ORTHO05D004277 1.2e-81 307.8 381 45.1
Peaxi162Scf00020g00327 Petunia axillaris HOM05D003460 ORTHO05D004277 2.1e-81 307.0 397 43.1
PGR042G0360 Punica granatum HOM05D003460 ORTHO05D004277 3.6e-81 306.2 383 43.9
GSVIVG01026933001 Vitis vinifera HOM05D003460 ORTHO05D004277 3.6e-81 306.2 378 45.2
Manes.01G256801 Manihot esculenta HOM05D003460 ORTHO05D004277 6.1e-81 305.4 383 44.9
FvH4_7g14270 Fragaria vesca HOM05D003460 ORTHO05D004277 7.9e-81 305.1 380 43.9
QL08p048825 Quercus lobata HOM05D003460 ORTHO05D004277 7.9e-81 305.1 381 45.4
FAN03G0059 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.0e-80 304.7 380 43.9
Ciclev10018441m.g Citrus clementina HOM05D003460 ORTHO05D004277 1.4e-80 304.3 380 43.2
FAN01G0910 Fragaria x ananassa HOM05D003460 ORTHO05D004277 1.4e-80 304.3 380 44.2
Potri.014G084500 Populus trichocarpa HOM05D003460 ORTHO05D004277 1.4e-80 304.3 381 44.4
Migut.N01446 Erythranthe guttata HOM05D003460 ORTHO05D004277 3.0e-80 303.1 398 43.2
FAN10G2005 Fragaria x ananassa HOM05D003460 ORTHO05D004277 3.0e-80 303.1 380 43.7
FAN10G1682 Fragaria x ananassa HOM05D003460 ORTHO05D004277 3.9e-80 302.8 380 43.7
Sabra02G0126900 Salix brachista HOM05D003460 ORTHO05D004277 5.1e-80 302.4 381 44.4
Actinidia10010 Actinidia chinensis HOM05D003460 ORTHO05D004277 6.7e-80 302.0 381 43.8
FAN06G0746 Fragaria x ananassa HOM05D003460 ORTHO05D004277 6.7e-80 302.0 380 43.4
FAN06G4334 Fragaria x ananassa HOM05D003460 ORTHO05D004277 6.7e-80 302.0 380 43.7
HanXRQChr13g0426551 Helianthus annuus HOM05D003460 ORTHO05D004277 6.7e-80 302.0 388 43.6
CiPaw.01G061200 Carya illinoinensis HOM05D003460 ORTHO05D004277 8.8e-80 301.6 387 43.4
Duzib268G1202 Durio zibethinus HOM05D003460 ORTHO05D004277 8.8e-80 301.6 380 44.7
Eucgr.E00136 Eucalyptus grandis HOM05D003460 ORTHO05D004277 1.1e-79 301.2 391 44.0
Dinv43816 Davidia involucrata HOM05D003460 ORTHO05D004277 1.5e-79 300.8 386 43.0
Nitab4.5_0000583g0090 Nicotiana tabacum HOM05D003460 ORTHO05D004277 2.0e-79 300.4 397 43.3
TAR629G2967 Trochodendron aralioides HOM05D003460 ORTHO05D004277 2.0e-79 300.4 383 45.4
Gorai.008G121300 Gossypium raimondii HOM05D003460 ORTHO05D004277 2.6e-79 300.1 386 43.8
Duzib133G1367 Durio zibethinus HOM05D003460 ORTHO05D004277 3.3e-79 299.7 380 43.4
Nn6g33423 Nelumbo nucifera HOM05D003460 ORTHO05D004277 4.4e-79 299.3 372 44.1
Actinidia20904 Actinidia chinensis HOM05D003460 ORTHO05D004277 5.7e-79 298.9 382 43.7
AUR62022565 Chenopodium quinoa HOM05D003460 ORTHO05D004277 5.7e-79 298.9 381 42.8
Nitab4.5_0000885g0020 Nicotiana tabacum HOM05D003460 ORTHO05D004277 5.7e-79 298.9 397 42.8
Rhsim07G0015100 Rhododendron simsii HOM05D003460 ORTHO05D004277 5.7e-79 298.9 401 41.9
ECA240G3092 Erigeron canadensis HOM05D003460 ORTHO05D004277 9.7e-79 298.1 389 43.4
Sc23g0002910 Simmondsia chinensis HOM05D003460 ORTHO05D004277 9.7e-79 298.1 384 45.6
Atru.chr5.497 Acer truncatum HOM05D003460 ORTHO05D004277 1.3e-78 297.7 381 44.1
SGA_v2.0_scaffold43G16414 Striga asiatica HOM05D003460 ORTHO05D004277 1.3e-78 297.7 389 45.2
MD07G1137100 Malus domestica HOM05D003460 ORTHO05D004277 1.7e-78 297.4 380 42.6
SGA_v2.0_scaffold11G05665 Striga asiatica HOM05D003460 ORTHO05D004277 3.7e-78 296.2 393 44.3
CSS0010662 Camellia sinensis var. sinensis HOM05D003460 ORTHO05D004277 1.4e-77 294.3 381 44.1
arahy.Tifrunner.gnm1.ann1.H3LZVP Arachis hypogaea HOM05D003460 ORTHO05D004277 1.8e-77 293.9 378 45.8
ClCG05G001530 Citrullus lanatus HOM05D003460 ORTHO05D004277 1.8e-77 293.9 392 44.9
Glyma.03G009200 Glycine max HOM05D003460 ORTHO05D004277 1.8e-77 293.9 382 44.8
Lsat_1_v5_gn_3_137161 Lactuca sativa HOM05D003460 ORTHO05D004277 1.8e-77 293.9 397 43.6
Solyc01g094620.3 Solanum lycopersicum HOM05D003460 ORTHO05D004277 1.8e-77 293.9 397 42.8
Cc02_g38020 Coffea canephora HOM05D003460 ORTHO05D004277 3.1e-77 293.1 397 40.3
Sopen01g038430 Solanum pennellii HOM05D003460 ORTHO05D004277 3.1e-77 293.1 397 42.6
MSTRG.17267 Avicennia marina HOM05D003460 ORTHO05D004277 4.1e-77 292.7 381 42.3
EL10Ac1g00416 Beta vulgaris HOM05D003460 ORTHO05D004277 4.1e-77 292.7 408 40.9
AUR62004357 Chenopodium quinoa HOM05D003460 ORTHO05D004277 4.1e-77 292.7 390 42.6
CsaV3_3G008910 Cucumis sativus L. HOM05D003460 ORTHO05D004277 4.1e-77 292.7 391 45.0
Sed0017726 Sechium edule HOM05D003460 ORTHO05D004277 4.1e-77 292.7 387 42.9
Ah.05g180610 Amaranthus hybridus HOM05D003460 ORTHO05D004277 5.3e-77 292.4 387 42.6
PSO063G5861 Papaver somniferum HOM05D003460 ORTHO05D004277 5.3e-77 292.4 384 44.5
Gohir.D11G093200 Gossypium hirsutum HOM05D003460 ORTHO05D004277 7.0e-77 292.0 380 43.7
CiPaw.02G030700 Carya illinoinensis HOM05D003460 ORTHO05D004277 9.1e-77 291.6 390 43.1
Gorai.007G099500 Gossypium raimondii HOM05D003460 ORTHO05D004277 1.6e-76 290.8 380 43.7
Phvul.010G099000 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 1.6e-76 290.8 377 45.1
Sp6g00490 Schrenkiella parvula HOM05D003460 ORTHO05D004277 1.6e-76 290.8 379 43.5
VMungo0331G1375 Vigna mungo HOM05D003460 ORTHO05D004277 1.6e-76 290.8 377 45.6
TPR.G8688 Trifolium pratense HOM05D003460 ORTHO05D004277 2.0e-76 290.4 379 43.8
HanXRQChr03g0093461 Helianthus annuus HOM05D003460 ORTHO05D004277 2.6e-76 290.0 380 43.7
MD01G1060600 Malus domestica HOM05D003460 ORTHO05D004277 3.5e-76 289.7 377 42.4
DCAR_008608 Daucus carota HOM05D003460 ORTHO05D004277 4.5e-76 289.3 390 42.3
Migut.O00143 Erythranthe guttata HOM05D003460 ORTHO05D004277 4.5e-76 289.3 397 42.6
Sabra14G0061300 Salix brachista HOM05D003460 ORTHO05D004277 4.5e-76 289.3 400 41.5
Sed0006269 Sechium edule HOM05D003460 ORTHO05D004277 4.5e-76 289.3 389 44.2
PSO782G4956 Papaver somniferum HOM05D003460 ORTHO05D004277 1.0e-75 288.1 387 44.2
Glyma.07G070700 Glycine max HOM05D003460 ORTHO05D004277 1.3e-75 287.7 382 44.2
arahy.Tifrunner.gnm1.ann1.T9PB4Q Arachis hypogaea HOM05D003460 ORTHO05D004277 2.2e-75 287.0 386 44.6
Medtr8g030800 Medicago truncatula HOM05D003460 ORTHO05D004277 2.2e-75 287.0 382 44.8
THA.LOC104825837 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 8.5e-75 285.0 382 41.9
CAN.G78.79 Capsicum annuum HOM05D003460 ORTHO05D004277 1.1e-74 284.6 381 42.8
BcaB01g02251 Brassica carinata HOM05D003460 ORTHO05D004277 5.5e-74 282.3 379 42.2
Carub.0006s3681 Capsella rubella HOM05D003460 ORTHO05D004277 5.5e-74 282.3 379 42.7
AL6G53010 Arabidopsis lyrata HOM05D003460 ORTHO05D004277 1.6e-73 280.8 379 42.7
VMungo1383G3436 Vigna mungo HOM05D003460 ORTHO05D004277 2.7e-73 280.0 378 42.6
BcaB01g02164 Brassica carinata HOM05D003460 ORTHO05D004277 6.1e-73 278.9 379 41.7
Ca_23633_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 6.1e-73 278.9 342 45.6
Lj7C512T7 Lonicera japonica HOM05D003460 ORTHO05D004277 8.0e-73 278.5 377 42.7
Lalb_Chr17g0339611 Lupinus albus HOM05D003460 ORTHO05D004277 8.0e-73 278.5 382 43.7
AT4G00450 Arabidopsis thaliana HOM05D003460 ORTHO05D004277 1.4e-72 277.7 379 42.5
Lj3g0003387 Lotus japonicus HOM05D003460 ORTHO05D004277 1.8e-72 277.3 382 44.2
THA.LOC104801439 Tarenaya hassleriana HOM05D003460 ORTHO05D004277 2.3e-72 276.9 387 41.3
Oeu053747.5 Olea europaea HOM05D003460 ORTHO05D004277 5.2e-72 275.8 385 41.8
A09p00470 Brassica napus HOM05D003460 ORTHO05D004277 1.1e-71 274.6 379 41.7
BolC3t16192H Brassica oleracea HOM05D003460 ORTHO05D004277 1.1e-71 274.6 379 41.4
BcaC01g06879 Brassica carinata HOM05D003460 ORTHO05D004277 1.5e-71 274.2 379 41.4
C03p39210 Brassica napus HOM05D003460 ORTHO05D004277 1.5e-71 274.2 379 41.4
Medtr7g077700 Medicago truncatula HOM05D003460 ORTHO05D004277 1.5e-71 274.2 380 41.8
Zm00001eb404370 Zea mays HOM05D003460 ORTHO05D004277 1.5e-71 274.2 383 41.3
A03p32180 Brassica napus HOM05D003460 ORTHO05D004277 2.0e-71 273.9 379 41.2
BraA03t12388Z Brassica rapa HOM05D003460 ORTHO05D004277 2.0e-71 273.9 379 41.2
Lj1g0005367 Lotus japonicus HOM05D003460 ORTHO05D004277 2.6e-71 273.5 381 43.3
BcaC04g24169 Brassica carinata HOM05D003460 ORTHO05D004277 4.4e-71 272.7 379 41.7
C09p00390 Brassica napus HOM05D003460 ORTHO05D004277 4.4e-71 272.7 379 41.7
Lalb_Chr04g0256941 Lupinus albus HOM05D003460 ORTHO05D004277 4.4e-71 272.7 354 43.8
BolC9t52974H Brassica oleracea HOM05D003460 ORTHO05D004277 2.8e-70 270.0 379 41.4
Psat3g108400 Pisum sativum HOM05D003460 ORTHO05D004277 1.8e-69 267.3 384 41.1
Glyma.18G232900 Glycine max HOM05D003460 ORTHO05D004277 7.0e-69 265.4 384 41.9
Phvul.008G142400 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 7.0e-69 265.4 380 41.1
Os07g0648266 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 9.1e-69 265.0 387 40.1
TPR.G37789 Trifolium pratense HOM05D003460 ORTHO05D004277 9.1e-69 265.0 383 41.0
Aa31LG5G530 Aethionema arabicum HOM05D003460 ORTHO05D004277 4.5e-68 262.7 379 41.4
Lalb_Chr10g0096951 Lupinus albus HOM05D003460 ORTHO05D004277 4.5e-68 262.7 382 40.8
BraA09t35713Z Brassica rapa HOM05D003460 ORTHO05D004277 1.3e-67 261.2 400 39.5
Glyma.09G259400 Glycine max HOM05D003460 ORTHO05D004277 2.2e-67 260.4 384 41.1
Hund27274 Selenicereus undatus HOM05D003460 ORTHO05D004277 3.8e-67 259.6 384 41.7
Ca_07919_v3 Cicer arietinum L. HOM05D003460 ORTHO05D004277 2.1e-65 253.8 387 39.8
Aa31LG1G11050 Aethionema arabicum HOM05D003460 ORTHO05D004277 4.4e-63 246.1 368 41.3
Psat4g205160 Pisum sativum HOM05D003460 ORTHO05D004277 2.8e-62 243.4 273 47.3
HPP92_025394 Vanilla planifolia HOM05D003460 ORTHO05D004277 8.3e-62 241.9 346 39.6
CBR_g44444 Chara braunii HOM05D003460 ORTHO05D004277 2.7e-60 236.9 461 33.8
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 1.0e-59 235.0 383 38.9
HPP92_028275 Vanilla planifolia HOM05D003460 ORTHO05D004277 1.2e-57 228.0 226 51.3
Oeu052946.1 Olea europaea HOM05D003460 ORTHO05D004277 1.4e-56 224.6 348 37.4
Zm00001eb382450 Zea mays HOM05D003460 ORTHO05D004277 5.4e-53 212.6 244 46.3
SalBow3G0963 Salvia bowleyana HOM05D003460 ORTHO05D004277 1.7e-51 207.6 391 34.5
MELO3C006109.2 Cucumis melo HOM05D002082 ORTHO05D002130 5.6e-50 202.6 208 51.4
unitig_0.g1263 Utricularia gibba HOM05D003460 ORTHO05D004277 1.1e-45 188.3 370 35.4
SHI13448 Sapria himalayana HOM05D003460 ORTHO05D004277 7.0e-45 185.7 352 34.1
Thhalv10028357m.g Eutrema salsugineum HOM05D003460 ORTHO05D004277 2.6e-39 167.2 375 31.5
Gohir.D12G111900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 3.0e-35 153.7 218 40.4
Zm00001eb055510 Zea mays HOM05D003460 ORTHO05D004277 8.6e-35 152.1 136 52.2
Gohir.A12G108900 Gossypium hirsutum HOM05D003460 ORTHO05D004277 3.6e-33 146.7 218 39.4
CDE04G0432 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 6.2e-33 146.0 162 44.4
AagrBONN_evm.TU.Sc2ySwM_344.2569 Anthoceros agrestis HOM05D003460 ORTHO05D004277 1.2e-28 131.7 136 46.3
Phvul.002G081700 Phaseolus vulgaris HOM05D003460 ORTHO05D004277 6.0e-28 129.4 91 62.6
unitig_61.g26386 Utricularia gibba HOM05D003460 ORTHO05D004277 4.4e-23 113.2 364 28.8
Os10g0550066 Oryza sativa ssp. japonica HOM05D003460 ORTHO05D004277 9.9e-23 112.1 92 55.4
MELO3C006111.2 Cucumis melo HOM05D003460 ORTHO05D004277 2.5e-18 97.4 184 38.0
CARHR248550 Cardamine hirsuta HOM05D003460 ORTHO05D004277 4.4e-15 86.7 178 33.1
Zm00001eb245130 Zea mays HOM05D003460 ORTHO05D004277 3.0e-11 73.9 75 50.7
Zm00001eb000520 Zea mays HOM05D003460 ORTHO05D004277 2.4e-08 64.3 120 33.3
SHI13450 Sapria himalayana HOM05D003460 ORTHO05D000014 5.3e-08 63.2 39 66.7
Cfa003926 Carpinus fangiana HOM05D003460 ORTHO05D004277 1.5e-07 61.6 40 70.0
CDE04G2266 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 7.6e-07 59.3 124 34.7


User provided reference genes

Program Settings