Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 0.0e+00 1439.1 710 100.0
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 0.0e+00 1148.7 711 78.8
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 0.0e+00 1132.5 711 78.1
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 0.0e+00 1132.5 711 78.1
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 4.0e-248 861.7 707 61.2
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 2.7e-228 795.8 702 58.0
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 2.3e-227 792.7 702 57.0
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 5.1e-227 791.6 706 55.8
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 1.9e-226 789.6 708 57.3
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 9.6e-226 787.3 702 56.3
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 2.1e-225 786.2 701 55.2
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 1.8e-224 783.1 701 54.5
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 1.8e-224 783.1 705 57.4
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 3.1e-224 782.3 702 56.1
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 4.0e-224 781.9 702 56.1
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 5.3e-224 781.6 702 56.1
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 9.0e-224 780.8 702 56.0
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 1.5e-223 780.0 701 55.9
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 2.6e-223 779.2 702 55.6
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 2.6e-223 779.2 702 55.1
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 7.6e-223 777.7 702 55.8
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 7.6e-223 777.7 707 55.6
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 2.2e-222 776.2 702 55.3
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 2.9e-222 775.8 704 55.7
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 2.9e-222 775.8 702 55.6
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 1.9e-221 773.1 704 56.2
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 1.9e-221 773.1 706 54.8
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 2.4e-221 772.7 702 56.3
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 3.2e-221 772.3 708 55.2
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 4.2e-221 771.9 702 55.7
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 5.4e-221 771.5 712 55.6
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 5.4e-221 771.5 702 55.6
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 1.6e-220 770.0 704 55.8
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 6.0e-220 768.1 704 55.0
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 6.0e-220 768.1 702 55.8
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 7.9e-220 767.7 720 56.8
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 1.3e-219 766.9 704 55.8
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 2.3e-219 766.1 708 55.5
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 3.9e-219 765.4 708 55.4
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 5.1e-219 765.0 703 55.2
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 1.1e-218 763.8 704 55.1
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 1.1e-218 763.8 706 55.5
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 1.5e-218 763.5 702 54.3
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 1.5e-218 763.5 709 55.6
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 1.9e-218 763.1 703 54.6
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 3.3e-218 762.3 708 54.8
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 3.3e-218 762.3 704 55.1
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 3.3e-218 762.3 704 56.4
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 5.6e-218 761.5 702 54.4
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 1.3e-217 760.4 702 55.0
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 1.3e-217 760.4 704 54.7
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 2.1e-217 759.6 704 55.0
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 4.8e-217 758.4 703 54.2
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 6.2e-217 758.1 702 54.0
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 1.1e-216 757.3 707 54.5
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 1.8e-216 756.5 704 54.8
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 1.8e-216 756.5 706 54.7
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 2.4e-216 756.1 704 54.7
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 4.0e-216 755.4 707 54.2
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 5.3e-216 755.0 709 54.0
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 1.5e-215 753.4 730 54.1
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 3.4e-215 752.3 707 55.0
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 3.4e-215 752.3 702 54.1
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 5.8e-215 751.5 699 54.5
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 7.6e-215 751.1 704 53.6
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 7.6e-215 751.1 704 54.0
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 9.9e-215 750.7 702 54.0
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 2.9e-214 749.2 705 53.6
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 4.9e-214 748.4 706 54.4
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 1.1e-213 747.3 704 53.7
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 1.1e-213 747.3 705 54.0
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 3.2e-213 745.7 704 54.0
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 4.2e-213 745.3 704 53.8
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 4.2e-213 745.3 704 55.5
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 1.6e-212 743.4 704 53.8
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 2.7e-212 742.7 705 54.2
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 2.7e-212 742.7 727 52.5
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 3.5e-212 742.3 707 54.0
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 4.6e-212 741.9 698 53.4
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 4.6e-212 741.9 702 54.4
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 1.8e-211 740.0 705 53.8
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 2.3e-211 739.6 707 53.9
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 2.3e-211 739.6 723 52.0
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 5.1e-211 738.4 704 52.8
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 1.1e-210 737.3 704 53.6
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 3.3e-210 735.7 705 53.9
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 3.3e-210 735.7 756 51.5
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 4.3e-210 735.3 706 53.0
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 5.6e-210 734.9 705 54.3
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 2.1e-209 733.0 680 53.8
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 4.8e-209 731.9 706 52.7
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 4.8e-209 731.9 683 54.0
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 2.6e-207 726.1 709 54.0
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 8.4e-206 721.1 703 53.8
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 1.4e-205 720.3 722 51.4
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 2.3e-203 713.0 751 51.1
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 3.0e-203 712.6 706 52.8
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 2.5e-202 709.5 656 54.6
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 5.7e-202 708.4 702 52.6
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 6.1e-196 688.3 702 51.0
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 5.1e-195 685.3 702 50.6
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 2.5e-194 682.9 694 51.7
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 4.3e-194 682.2 694 51.4
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 9.7e-194 681.0 702 50.1
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 5.3e-192 675.2 625 54.7
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 2.2e-190 669.8 702 50.1
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 2.7e-188 662.9 699 49.8
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 4.5e-183 645.6 702 49.0
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 5.7e-178 628.6 589 53.5
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 8.0e-172 608.2 549 54.6
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 5.7e-170 602.1 718 47.1
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 5.3e-168 595.5 644 48.6
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 9.8e-162 574.7 590 50.5
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 8.6e-150 535.0 719 43.4
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 3.5e-143 513.1 552 48.7
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 1.2e-122 444.9 471 49.3
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 1.6e-116 424.5 768 37.6
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 7.6e-114 415.6 395 54.7
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 4.2e-104 383.3 817 35.0
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 2.2e-97 360.9 380 50.0
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 4.5e-82 310.1 515 38.4
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 6.1e-71 273.1 620 31.9
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 9.7e-69 265.8 213 58.2
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 9.1e-67 259.2 277 48.0
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 4.1e-59 233.8 253 49.4
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 2.2e-52 211.5 172 57.0
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 5.9e-50 203.4 248 44.8
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 1.5e-45 188.7 177 53.1
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.2e-44 184.9 127 65.4
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 3.7e-36 157.5 180 47.8
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 1.6e-31 142.1 269 34.2
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 6.8e-30 136.7 138 51.4
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 9.8e-29 132.9 94 67.0
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 4.1e-27 127.5 240 35.8
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 7.8e-26 123.2 96 62.5
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 1.4e-19 102.4 75 65.3
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 3.2e-19 101.3 76 65.8
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 1.6e-10 72.4 50 62.0
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 2.1e-10 72.0 76 43.4
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 4.6e-10 70.9 50 60.0
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 3.0e-09 68.2 218 27.5


User provided reference genes

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