Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_13110 Physcomitrium patens HOM05D003652 ORTHO05D004190 0.0e+00 2288.1 1205 100.0
Pp3c1_7430 Physcomitrium patens HOM05D003652 ORTHO05D004190 0.0e+00 1639.0 1239 73.8
Pp3c5_4060 Physcomitrium patens HOM05D003652 ORTHO05D004190 8.2e-312 1074.7 1267 50.8
Mapoly0098s0037 Marchantia polymorpha HOM05D003652 ORTHO05D004190 4.1e-277 958.7 1074 51.8
AagrBONN_evm.TU.Sc2ySwM_344.5035 Anthoceros agrestis HOM05D003652 ORTHO05D004190 4.0e-272 942.2 1013 52.4
ATR0772G136 Amborella trichopoda HOM05D003652 ORTHO05D004190 8.3e-238 828.2 1123 45.5
TAR376G0660 Trochodendron aralioides HOM05D003652 ORTHO05D004190 1.1e-232 811.2 1126 44.8
TAR628G0150 Trochodendron aralioides HOM05D003652 ORTHO05D004190 5.8e-231 805.4 1135 44.1
Aqoxy5G02100 Aquilegia oxysepala HOM05D003652 ORTHO05D004190 9.8e-231 804.7 1118 44.2
Pp3c24_1100 Physcomitrium patens HOM05D003652 ORTHO05D004190 2.5e-226 790.0 992 47.8
GSVIVG01034519001 Vitis vinifera HOM05D003652 ORTHO05D004190 9.5e-226 788.1 1123 43.6
MD07G1075500 Malus domestica HOM05D003652 ORTHO05D004190 3.6e-225 786.2 1127 43.3
CSS0021982 Camellia sinensis var. sinensis HOM05D003652 ORTHO05D004190 2.3e-224 783.5 1122 43.5
TPR.G8817 Trifolium pratense HOM05D003652 ORTHO05D004190 6.8e-224 781.9 1128 42.9
Dinv25854 Davidia involucrata HOM05D003652 ORTHO05D004190 2.6e-223 780.0 1138 43.4
Medtr1g096550 Medicago truncatula HOM05D003652 ORTHO05D004190 9.9e-223 778.1 1133 43.2
Ca_10620_v3 Cicer arietinum L. HOM05D003652 ORTHO05D004190 1.3e-222 777.7 1128 43.0
CsaV3_7G024680 Cucumis sativus L. HOM05D003652 ORTHO05D004190 5.4e-221 772.3 1129 42.1
TWI34G0668 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 2.7e-220 770.0 1130 43.2
Atru.chr13.2145 Acer truncatum HOM05D003652 ORTHO05D004190 1.3e-219 767.7 1123 43.0
Peaxi162Scf00765g00049 Petunia axillaris HOM05D003652 ORTHO05D004190 3.0e-219 766.5 1115 42.0
Eucgr.F04242 Eucalyptus grandis HOM05D003652 ORTHO05D004190 3.9e-219 766.1 1034 44.5
Cpa.g.sc21.193 Carica papaya HOM05D003652 ORTHO05D004190 5.1e-219 765.8 997 45.5
CiPaw.07G160100 Carya illinoinensis HOM05D003652 ORTHO05D004190 5.1e-219 765.8 1008 44.1
MELO3C024093.2 Cucumis melo HOM05D003652 ORTHO05D004190 6.6e-219 765.4 1120 42.2
Lj5g0007913 Lotus japonicus HOM05D003652 ORTHO05D004190 6.6e-219 765.4 1138 42.0
RcHm_v2.0_Chr1g0332001 Rosa chinensis HOM05D003652 ORTHO05D004190 8.6e-219 765.0 1036 44.3
Nn5g28722 Nelumbo nucifera HOM05D003652 ORTHO05D004190 1.5e-218 764.2 1070 42.9
Potri.005G191500 Populus trichocarpa HOM05D003652 ORTHO05D004190 1.5e-218 764.2 1036 44.8
Potri.002G068900 Populus trichocarpa HOM05D003652 ORTHO05D004190 1.9e-218 763.8 988 44.9
Duzib116G0402 Durio zibethinus HOM05D003652 ORTHO05D004190 3.3e-218 763.1 1123 42.6
Psat6g186720 Pisum sativum HOM05D003652 ORTHO05D004190 5.6e-218 762.3 1140 42.0
PGR042G2936 Punica granatum HOM05D003652 ORTHO05D004190 7.3e-218 761.9 1128 42.0
Ciclev10000108m.g Citrus clementina HOM05D003652 ORTHO05D004190 2.1e-217 760.4 1121 42.0
PSO210G4735 Papaver somniferum HOM05D003652 ORTHO05D004190 4.7e-217 759.2 1120 43.6
Actinidia29525 Actinidia chinensis HOM05D003652 ORTHO05D004190 6.2e-217 758.8 1111 42.5
Lalb_Chr21g0305741 Lupinus albus HOM05D003652 ORTHO05D004190 6.2e-217 758.8 1126 41.7
EL10Ac1g01536 Beta vulgaris HOM05D003652 ORTHO05D004190 8.1e-217 758.4 1130 41.9
FvH4_7g05280 Fragaria vesca HOM05D003652 ORTHO05D004190 8.1e-217 758.4 1037 43.7
Actinidia10649 Actinidia chinensis HOM05D003652 ORTHO05D004190 1.4e-216 757.7 1146 41.3
CANSAT25G1176 Cannabis sativa HOM05D003652 ORTHO05D004190 1.4e-216 757.7 1138 41.7
PSO238G0028 Papaver somniferum HOM05D003652 ORTHO05D004190 1.8e-216 757.3 1120 43.6
Sed0009622 Sechium edule HOM05D003652 ORTHO05D004190 1.8e-216 757.3 1124 41.2
Glyma.20G174900 Glycine max HOM05D003652 ORTHO05D004190 2.4e-216 756.9 1129 42.0
HanXRQChr11g0339321 Helianthus annuus HOM05D003652 ORTHO05D004190 8.9e-216 755.0 1120 42.0
Hund26699 Selenicereus undatus HOM05D003652 ORTHO05D004190 8.9e-216 755.0 1125 41.3
Nn1g06100 Nelumbo nucifera HOM05D003652 ORTHO05D004190 1.5e-215 754.2 1138 42.4
SGA_v2.0_scaffold25G11172 Striga asiatica HOM05D003652 ORTHO05D004190 2.0e-215 753.8 1112 42.8
Prupe.8G058700 Prunus persica HOM05D003652 ORTHO05D004190 2.2e-214 750.4 1127 42.1
QL02p033637 Quercus lobata HOM05D003652 ORTHO05D004190 3.8e-214 749.6 1067 43.3
Glyma.10G217200 Glycine max HOM05D003652 ORTHO05D004190 4.9e-214 749.2 1138 42.1
Sc02g0004140 Simmondsia chinensis HOM05D003652 ORTHO05D004190 6.4e-214 748.8 1119 42.5
CAN.G268.10 Capsicum annuum HOM05D003652 ORTHO05D004190 3.2e-213 746.5 1052 42.5
Dinv41091 Davidia involucrata HOM05D003652 ORTHO05D004190 2.7e-212 743.4 934 45.0
FAN03G2156 Fragaria x ananassa HOM05D003652 ORTHO05D004190 8.7e-211 738.4 1064 42.4
VMungo0720G3010 Vigna mungo HOM05D003652 ORTHO05D004190 8.7e-211 738.4 1129 40.5
Gohir.D02G070200 Gossypium hirsutum HOM05D003652 ORTHO05D004190 1.5e-210 737.6 996 44.5
TWI60G1418 Tripterygium wilfordii HOM05D003652 ORTHO05D004190 1.5e-210 737.6 1007 44.3
FAN06G2696 Fragaria x ananassa HOM05D003652 ORTHO05D004190 1.9e-210 737.3 1064 42.3
Gorai.005G079300 Gossypium raimondii HOM05D003652 ORTHO05D004190 1.9e-210 737.3 995 44.3
FAN01G0918 Fragaria x ananassa HOM05D003652 ORTHO05D004190 3.3e-210 736.5 1064 42.3
Cfa013845 Carpinus fangiana HOM05D003652 ORTHO05D004190 5.6e-210 735.7 976 44.6
Lsat_1_v5_gn_7_71861 Lactuca sativa HOM05D003652 ORTHO05D004190 7.3e-210 735.3 1125 40.7
Nitab4.5_0005705g0020 Nicotiana tabacum HOM05D003652 ORTHO05D004190 7.3e-210 735.3 1133 40.9
THA.LOC104812038 Tarenaya hassleriana HOM05D003652 ORTHO05D004190 7.3e-210 735.3 1157 39.8
Gohir.A02G064300 Gossypium hirsutum HOM05D003652 ORTHO05D004190 9.6e-210 734.9 996 44.4
CDE06G1552 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 1.6e-209 734.2 1134 41.2
Nitab4.5_0005926g0010 Nicotiana tabacum HOM05D003652 ORTHO05D004190 1.6e-209 734.2 998 43.7
SGA_v2.0_scaffold19G08667 Striga asiatica HOM05D003652 ORTHO05D004190 8.1e-209 731.9 1118 41.7
MSTRG.22372 Avicennia marina HOM05D003652 ORTHO05D004190 1.1e-208 731.5 1114 41.5
AT1G21170 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 1.8e-208 730.7 984 42.5
AUR62026715 Chenopodium quinoa HOM05D003652 ORTHO05D004190 2.4e-208 730.3 1008 42.9
SalBow6G6910 Salvia bowleyana HOM05D003652 ORTHO05D004190 2.4e-208 730.3 1030 42.7
Manes.02G178800 Manihot esculenta HOM05D003652 ORTHO05D004190 3.1e-208 729.9 969 45.0
ECA236G0544 Erigeron canadensis HOM05D003652 ORTHO05D004190 5.3e-208 729.2 1014 42.4
Lj7C372G9 Lonicera japonica HOM05D003652 ORTHO05D004190 2.6e-207 726.9 1049 41.8
Phvul.007G088900 Phaseolus vulgaris HOM05D003652 ORTHO05D004190 2.6e-207 726.9 982 43.3
AL1G34230 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 4.4e-207 726.1 984 42.5
Sp1g18810 Schrenkiella parvula HOM05D003652 ORTHO05D004190 4.4e-207 726.1 1134 39.2
AUR62013575 Chenopodium quinoa HOM05D003652 ORTHO05D004190 1.1e-205 721.5 1137 39.9
vmacro18508 Vaccinium macrocarpon HOM05D003652 ORTHO05D004190 1.1e-205 721.5 921 44.7
Thecc.08G150000 Theobroma cacao HOM05D003652 ORTHO05D004190 1.9e-205 720.7 1025 44.0
Migut.N03225 Erythranthe guttata HOM05D003652 ORTHO05D004190 3.2e-205 719.9 1114 41.1
Os04g0421900 Oryza sativa ssp. japonica HOM05D003652 ORTHO05D004190 3.2e-205 719.9 992 42.6
Sopen04g027310 Solanum pennellii HOM05D003652 ORTHO05D004190 3.2e-205 719.9 1146 39.6
Rhsim08G0021800 Rhododendron simsii HOM05D003652 ORTHO05D004190 4.2e-205 719.5 1265 37.9
Aa31LG4G6890 Aethionema arabicum HOM05D003652 ORTHO05D004190 7.1e-205 718.8 1128 40.0
BcaC08g45509 Brassica carinata HOM05D003652 ORTHO05D004190 3.5e-204 716.5 1134 41.5
Solyc04g071350.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 6.0e-204 715.7 1146 39.7
Carub.0001s2061 Capsella rubella HOM05D003652 ORTHO05D004190 1.0e-203 714.9 1135 39.9
BraA07t30471Z Brassica rapa HOM05D003652 ORTHO05D004190 1.3e-203 714.5 1062 40.9
A07p28340 Brassica napus HOM05D003652 ORTHO05D004190 1.7e-203 714.1 1060 40.8
CAN.G89.17 Capsicum annuum HOM05D003652 ORTHO05D004190 2.3e-203 713.8 1032 41.6
Aa31LG7G5310 Aethionema arabicum HOM05D003652 ORTHO05D004190 5.1e-203 712.6 1139 38.8
Carub.0002s2373 Capsella rubella HOM05D003652 ORTHO05D004190 5.1e-203 712.6 1003 41.5
BcaB02g07077 Brassica carinata HOM05D003652 ORTHO05D004190 6.6e-203 712.2 1130 40.4
C06p31780 Brassica napus HOM05D003652 ORTHO05D004190 8.7e-203 711.8 1135 41.5
BolC6t38307H Brassica oleracea HOM05D003652 ORTHO05D004190 8.7e-203 711.8 1135 41.5
Sp5g31980 Schrenkiella parvula HOM05D003652 ORTHO05D004190 1.1e-202 711.4 1135 39.9
Sabra02G0054200 Salix brachista HOM05D003652 ORTHO05D004190 3.3e-202 709.9 1223 38.9
Nitab4.5_0000140g0050 Nicotiana tabacum HOM05D003652 ORTHO05D004190 4.3e-202 709.5 983 43.4
CARHR070360 Cardamine hirsuta HOM05D003652 ORTHO05D004190 2.1e-201 707.2 1125 38.7
AT1G76850 Arabidopsis thaliana HOM05D003652 ORTHO05D004190 3.6e-201 706.4 1006 41.1
Cc10_g14750 Coffea canephora HOM05D003652 ORTHO05D004190 2.4e-200 703.7 1143 40.2
Thhalv10006745m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 3.4e-199 699.9 851 44.8
Oeu011939.2 Olea europaea HOM05D003652 ORTHO05D004190 1.3e-198 698.0 1180 38.9
AL2G36970 Arabidopsis lyrata HOM05D003652 ORTHO05D004190 1.7e-198 697.6 1005 40.7
SHI18207 Sapria himalayana HOM05D003652 ORTHO05D004190 1.7e-198 697.6 1129 40.3
C02p34110 Brassica napus HOM05D003652 ORTHO05D004190 2.9e-198 696.8 1124 39.3
Haze_22519 Corylus avellana HOM05D003652 ORTHO05D004190 2.9e-198 696.8 1178 39.5
Solyc12g056520.3 Solanum lycopersicum HOM05D003652 ORTHO05D004190 6.4e-198 695.7 1002 41.9
BcaC03g15706 Brassica carinata HOM05D003652 ORTHO05D004190 3.2e-197 693.3 1116 39.2
CARHR021630 Cardamine hirsuta HOM05D003652 ORTHO05D004190 3.2e-197 693.3 970 41.4
ECA247G2571 Erigeron canadensis HOM05D003652 ORTHO05D004190 1.6e-196 691.0 984 41.9
ClCG09G010020 Citrullus lanatus HOM05D003652 ORTHO05D004190 1.6e-193 681.0 1243 37.2
arahy.Tifrunner.gnm1.ann1.8KD3C5 Arachis hypogaea HOM05D003652 ORTHO05D004190 1.4e-192 677.9 978 41.6
DCAR_014431 Daucus carota HOM05D003652 ORTHO05D004190 1.8e-192 677.6 1114 39.8
HanXRQChr06g0174441 Helianthus annuus HOM05D003652 ORTHO05D004190 1.8e-192 677.6 1029 40.6
Sabra05G0146300 Salix brachista HOM05D003652 ORTHO05D004190 4.5e-191 672.9 1256 37.3
arahy.Tifrunner.gnm1.ann1.2W1LLW Arachis hypogaea HOM05D003652 ORTHO05D004190 2.5e-189 667.2 1097 38.9
Thhalv10018046m.g Eutrema salsugineum HOM05D003652 ORTHO05D004190 1.8e-187 661.0 1025 40.6
HanXRQChr02g0045411 Helianthus annuus HOM05D003652 ORTHO05D004190 3.0e-187 660.2 1051 39.4
Peaxi162Scf01294g00125 Petunia axillaris HOM05D003652 ORTHO05D004190 1.3e-185 654.8 851 44.2
CDE08G0217 Ceratophyllum demersum HOM05D003652 ORTHO05D004190 1.3e-177 628.2 1041 39.0
Hma1.2p1_0105F.1_g050770 Hydrangea macrophylla HOM05D003652 ORTHO05D004190 1.3e-169 601.7 723 45.0
SEGI_34715 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 5.9e-167 592.8 671 48.4
unitig_744.g24568 Utricularia gibba HOM05D003652 ORTHO05D004190 1.1e-165 588.6 1123 37.0
SMO118G0055 Selaginella moellendorffii HOM05D003652 ORTHO05D004190 2.0e-162 577.8 785 44.7
Zm00001eb083200 Zea mays HOM05D003652 ORTHO05D004190 2.0e-162 577.8 865 39.7
BolC2t09427H Brassica oleracea HOM05D003652 ORTHO05D004190 1.2e-159 568.5 752 42.2
Ah.05g167890 Amaranthus hybridus HOM05D003652 ORTHO05D004190 3.5e-159 567.0 986 39.1
HPP92_016941 Vanilla planifolia HOM05D003652 ORTHO05D004190 4.4e-146 523.5 780 44.4
Zm00001eb422350 Zea mays HOM05D003652 ORTHO05D004190 2.0e-130 471.5 670 39.6
FAN10G0990 Fragaria x ananassa HOM05D003652 ORTHO05D004190 9.5e-125 452.6 538 46.3
Sopen12g029120 Solanum pennellii HOM05D003652 ORTHO05D004190 1.4e-123 448.7 714 40.1
MBI09_g45353_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 2.0e-119 434.9 523 48.6
MD02G1241200 Malus domestica HOM05D003652 ORTHO05D004190 3.9e-118 430.6 477 51.8
CBR_g18955 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-112 412.1 749 34.4
A02p20920 Brassica napus HOM05D003652 ORTHO05D004190 1.9e-112 411.8 547 46.8
Oeu014495.2 Olea europaea HOM05D003652 ORTHO05D004190 4.3e-93 347.4 1120 28.2
MD02G1241400 Malus domestica HOM05D003652 ORTHO05D004190 1.1e-91 342.8 481 40.1
Nitab4.5_0008106g0020 Nicotiana tabacum HOM05D003652 ORTHO05D004190 1.7e-89 335.5 667 36.6
Nitab4.5_0008106g0010 Nicotiana tabacum HOM05D003652 ORTHO05D004190 4.6e-79 300.8 444 39.6
MBI09_g20113_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 7.9e-79 300.1 471 38.6
COL.COLO4_37836 Corchorus olitorius HOM05D003652 ORTHO05D004190 3.4e-66 258.1 440 41.1
MBI02_g15889_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 6.3e-60 237.3 194 63.9
COL.COLO4_37835 Corchorus olitorius HOM05D003652 ORTHO05D004190 2.4e-59 235.3 352 38.9
MBI09_g18626_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 5.9e-58 230.7 380 41.6
Rhsim10G0066500 Rhododendron simsii HOM05D003652 ORTHO05D004190 5.0e-57 227.6 351 38.2
Sopen12g029110 Solanum pennellii HOM05D003652 ORTHO05D004190 1.2e-55 223.0 349 38.4
BcaB02g07120 Brassica carinata HOM05D003652 ORTHO05D004190 7.9e-55 220.3 223 56.1
Aa31LG7G5260 Aethionema arabicum HOM05D003652 ORTHO05D004190 1.5e-50 206.1 172 61.6
MBI17_g42470_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 1.5e-50 206.1 258 41.9
SEGI_16189 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 3.4e-50 204.9 162 64.2
Medtr3g008090 Medicago truncatula HOM05D003652 ORTHO05D004190 5.0e-49 201.1 169 63.3
Zm00001eb342060 Zea mays HOM05D003652 ORTHO05D004190 2.4e-43 182.2 182 56.0
SEGI_20180 Sequoiadendron giganteum HOM05D003652 ORTHO05D004190 2.0e-37 162.5 254 44.1
MBI17_g21001_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 5.5e-32 144.4 226 43.4
PGSC0003DMG400024108 Solanum tuberosum HOM05D003652 ORTHO05D004190 2.3e-30 139.0 169 45.0
MBI09_g47603_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 1.3e-25 123.2 149 45.6
Cre16.g684600 Chlamydomonas reinhardtii HOM05D003652 ORTHO05D004190 3.8e-25 121.7 323 30.7
Zm00001eb269890 Zea mays HOM05D003652 ORTHO05D004190 1.0e-22 113.6 106 55.7
Zm00001eb119180 Zea mays HOM05D003652 ORTHO05D004190 5.7e-21 107.8 125 49.6
Zm00001eb092050 Zea mays HOM05D003652 ORTHO05D004190 7.0e-19 100.9 161 42.9
Zm00001eb184190 Zea mays HOM05D003652 ORTHO05D004190 1.2e-18 100.1 130 45.4
Zm00001eb179990 Zea mays HOM05D003652 ORTHO05D004190 3.5e-18 98.6 87 57.5
Zm00001eb125110 Zea mays HOM05D003652 ORTHO05D004190 1.7e-17 96.3 85 58.8
MBI09_g18624_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 7.3e-16 90.9 150 38.0
Zm00001eb116630 Zea mays HOM05D003652 ORTHO05D004190 6.1e-15 87.8 77 57.1
Actinidia01153 Actinidia chinensis HOM05D003652 ORTHO05D004190 1.0e-14 87.0 94 43.6
A02p20930 Brassica napus HOM05D003652 ORTHO05D004190 1.5e-13 83.2 159 32.1
COL.COLO4_33551 Corchorus olitorius HOM05D003652 ORTHO05D004190 1.5e-13 83.2 116 47.4
Cre09.g404650 Chlamydomonas reinhardtii HOM05D000361 ORTHO05D004243 6.0e-10 71.2 211 25.6
Nn1g00073 Nelumbo nucifera HOM05D003652 ORTHO05D004190 1.3e-09 70.1 121 37.2
Lalb_Chr06g0162011 Lupinus albus HOM05D003652 ORTHO05D004190 1.1e-08 67.0 100 37.0
MBI17_g19402_MAGBIO Magnolia biondii HOM05D003652 ORTHO05D004190 7.3e-08 64.3 68 50.0
FAN10G3104 Fragaria x ananassa HOM05D003652 ORTHO05D004190 1.1e-06 60.5 73 39.7
PRCOL_00004542 Prasinoderma coloniale HOM05D000361 ORTHO05D004243 1.1e-06 60.5 229 22.7
MCO10G287 Micromonas commoda HOM05D000361 ORTHO05D004243 2.3e-06 59.3 187 24.1
Os03g0737800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D004243 2.3e-06 59.3 187 25.1
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 5.2e-06 58.2 51 54.9
Zm00001eb215280 Zea mays HOM05D000361 ORTHO05D004243 6.8e-06 57.8 186 22.6
FAN08G2818 Fragaria x ananassa HOM05D000361 ORTHO05D004243 8.9e-06 57.4 201 25.9
Lj5g0013347 Lotus japonicus HOM05D000361 ORTHO05D004243 8.9e-06 57.4 148 26.4


User provided reference genes

Program Settings