Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 2768.8 1392 100.0
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 2394.0 1398 86.3
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1733.4 1381 62.9
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1475.3 1335 55.9
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 1399.4 1406 51.3
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 1395.6 1375 52.0
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 1394.0 1345 52.6
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 1385.5 1355 52.1
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 1384.4 1352 52.1
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 1382.5 1361 51.9
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1382.1 1357 51.5
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 1381.7 1335 52.0
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 1380.5 1343 52.3
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 1379.8 1406 50.5
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 1379.8 1348 52.0
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 1377.8 1343 51.9
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 1373.2 1337 51.8
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 1373.2 1351 51.8
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 1373.2 1418 50.3
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 1373.2 1346 51.6
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 1372.8 1344 51.6
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 1372.8 1409 50.6
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 1372.5 1374 51.7
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 1372.5 1351 51.7
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 1371.7 1351 51.7
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1371.7 1427 50.5
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 1371.7 1355 52.2
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 1370.9 1340 51.5
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 1370.1 1367 51.2
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 1368.2 1419 50.3
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 1367.8 1390 50.5
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 1367.8 1389 50.0
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 1367.4 1340 51.6
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 1367.1 1379 51.4
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 1366.7 1355 51.3
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 1366.7 1406 50.2
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 1365.9 1364 51.5
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 1365.5 1362 51.0
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 1365.1 1351 51.2
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 1362.1 1370 51.1
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 1361.7 1336 51.6
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1359.4 1360 51.2
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1359.0 1377 50.9
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 1358.2 1351 50.9
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 1357.0 1335 51.6
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 1355.5 1321 51.8
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 1354.0 1362 50.5
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 1354.0 1337 51.5
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 1353.6 1345 51.3
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 1352.4 1373 50.4
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 1352.4 1337 51.5
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 1349.7 1358 50.6
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 1348.6 1366 50.5
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 1346.6 1359 50.2
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 1345.1 1341 51.5
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 1345.1 1275 52.2
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1345.1 1378 50.9
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 1340.1 1345 50.4
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 1339.3 1354 49.6
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 1337.0 1347 51.0
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 1337.0 1360 50.6
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 1334.3 1357 50.0
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 1333.9 1355 50.0
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 1333.5 1355 50.0
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 1333.2 1380 49.1
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 1332.8 1343 50.1
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 1332.4 1358 49.9
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 1332.0 1508 47.5
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 1331.2 1313 50.5
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 1329.7 1355 49.8
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 1324.3 1360 49.8
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 1324.3 1370 49.9
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 1323.1 1364 49.7
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 1319.7 1387 49.2
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1315.8 1354 50.2
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 1315.1 1364 49.4
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 1310.0 1282 52.7
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 1308.9 1388 49.6
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 1299.3 1375 48.7
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1292.7 1353 49.0
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 1290.4 1172 53.3
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1285.8 1345 49.4
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 1281.9 1511 46.1
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1270.4 1347 49.3
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1270.4 1346 49.1
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1255.7 1188 52.5
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 1237.6 1389 47.1
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1218.8 1350 47.8
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 1213.0 1288 48.4
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1206.8 1402 46.4
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 1147.1 1670 40.2
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1131.3 1370 45.4
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 2.9e-311 1072.4 1520 41.1
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 2.0e-307 1059.7 853 61.3
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 1.0e-303 1047.3 1105 48.9
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 1.5e-270 937.2 764 57.9
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 4.8e-237 825.9 930 46.9
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 8.1e-229 798.5 675 56.7
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 1.3e-221 774.6 992 43.6
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 6.3e-213 745.7 906 45.3
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 5.0e-202 709.5 821 45.8
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 8.5e-202 708.8 1478 30.6
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 1.4e-188 664.8 787 46.5
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 4.4e-182 643.3 599 53.6
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 2.8e-181 640.6 823 44.6
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 1.2e-142 512.3 471 51.8
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 2.6e-134 484.6 431 55.5
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 4.8e-128 463.8 614 44.6
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 6.7e-122 443.4 535 46.2
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 7.6e-110 403.3 354 54.2
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 1.8e-103 382.1 501 41.9
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 9.7e-81 306.6 516 36.2
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 3.5e-78 298.1 192 70.8
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 7.2e-60 237.3 220 51.4
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 5.4e-55 221.1 215 49.3
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 1.6e-51 209.5 514 29.8
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.1e-34 153.7 145 51.0
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 3.4e-33 148.7 133 54.9
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 4.6e-30 138.3 128 51.6
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 7.8e-30 137.5 317 30.6
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 8.9e-26 124.0 169 40.8
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 2.2e-24 119.4 91 63.7
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 1.2e-22 113.6 307 28.7
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 1.6e-22 113.2 112 55.4
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 1.8e-18 99.8 108 48.1
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 4.0e-18 98.6 75 60.0
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 9.0e-18 97.4 113 50.4
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.5e-17 96.7 66 66.7
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 8.4e-16 90.9 151 38.4
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 7.8e-14 84.3 135 35.6
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 4.3e-12 78.6 81 40.7
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 5.6e-12 78.2 84 42.9
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 7.3e-12 77.8 50 74.0
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 1.3e-11 77.0 86 39.5
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.4e-10 73.6 65 55.4
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 5.3e-10 71.6 100 33.0
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 2.6e-09 69.3 102 38.2
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 1.1e-07 63.9 45 64.4
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 2.4e-07 62.8 78 42.3
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 1.6e-06 60.1 42 61.9
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 2.1e-06 59.7 42 64.3


User provided reference genes

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