Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c10_8220 Physcomitrium patens HOM05D004394 ORTHO05D005208 9.2e-68 260.0 123 100.0
Mapoly0008s0078 Marchantia polymorpha HOM05D004394 ORTHO05D005208 3.1e-55 218.4 123 80.5
SMO356G0508 Selaginella moellendorffii HOM05D004394 ORTHO05D005208 1.7e-53 212.6 123 76.4
SEGI_05614 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 2.3e-50 202.2 123 72.4
CBR_g44926 Chara braunii HOM05D004394 ORTHO05D005208 4.3e-49 198.0 123 72.4
CANSAT80G0901 Cannabis sativa HOM05D004394 ORTHO05D005208 5.3e-47 191.0 123 70.7
PSO541G5821 Papaver somniferum HOM05D004394 ORTHO05D005208 6.9e-47 190.7 123 67.5
PSO781G0205 Papaver somniferum HOM05D004394 ORTHO05D005208 6.9e-47 190.7 123 67.5
Nn2g12152 Nelumbo nucifera HOM05D004394 ORTHO05D005208 5.8e-46 187.6 123 68.3
SalBow7G3516 Salvia bowleyana HOM05D004394 ORTHO05D005208 5.8e-46 187.6 123 69.1
TAR376G0181 Trochodendron aralioides HOM05D004394 ORTHO05D005208 5.8e-46 187.6 123 67.5
CANSAT80G2869 Cannabis sativa HOM05D004394 ORTHO05D005208 1.3e-45 186.4 123 67.5
Haze_22268 Corylus avellana HOM05D004394 ORTHO05D005208 1.3e-45 186.4 123 68.3
TAR628G0041 Trochodendron aralioides HOM05D004394 ORTHO05D005208 1.3e-45 186.4 123 66.7
Nn5g30107 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.2e-45 185.7 122 66.4
SalBow7G2639 Salvia bowleyana HOM05D004394 ORTHO05D005208 2.2e-45 185.7 123 68.3
Prupe.1G517100 Prunus persica HOM05D004394 ORTHO05D005208 4.9e-45 184.5 123 67.5
SGA_v2.0_scaffold24G10492 Striga asiatica HOM05D004394 ORTHO05D005208 6.4e-45 184.1 123 65.9
ATR0782G020 Amborella trichopoda HOM05D004394 ORTHO05D005208 1.1e-44 183.3 123 66.7
FAN08G2022 Fragaria x ananassa HOM05D004394 ORTHO05D005208 1.1e-44 183.3 123 65.0
GSVIVG01032524001 Vitis vinifera HOM05D004394 ORTHO05D005208 1.1e-44 183.3 123 66.7
QL12p036785 Quercus lobata HOM05D004394 ORTHO05D005208 1.9e-44 182.6 122 66.4
Ah.12g059310 Amaranthus hybridus HOM05D004394 ORTHO05D005208 2.4e-44 182.2 123 65.9
AUR62036356 Chenopodium quinoa HOM05D004394 ORTHO05D005208 2.4e-44 182.2 123 65.0
AUR62030717 Chenopodium quinoa HOM05D004394 ORTHO05D005208 3.2e-44 181.8 123 65.0
Ca_20267_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 3.2e-44 181.8 123 65.9
PGR042G0728 Punica granatum HOM05D004394 ORTHO05D005208 4.2e-44 181.4 123 65.9
FAN13G1242 Fragaria x ananassa HOM05D004394 ORTHO05D005208 5.4e-44 181.0 123 64.2
MD08G1182900 Malus domestica HOM05D004394 ORTHO05D005208 5.4e-44 181.0 123 65.9
Ca_08121_v3 Cicer arietinum L. HOM05D004394 ORTHO05D005208 7.1e-44 180.6 123 65.9
EL10Ac5g11858 Beta vulgaris HOM05D004394 ORTHO05D005208 9.3e-44 180.3 123 64.2
FvH4_5g37330 Fragaria vesca HOM05D004394 ORTHO05D005208 9.3e-44 180.3 123 64.2
FAN18G2812 Fragaria x ananassa HOM05D004394 ORTHO05D005208 9.3e-44 180.3 123 64.2
CiPaw.08G045200 Carya illinoinensis HOM05D004394 ORTHO05D005208 1.2e-43 179.9 121 67.8
Duzib041G0085 Durio zibethinus HOM05D004394 ORTHO05D005208 1.2e-43 179.9 125 68.0
Duzib093G0332 Durio zibethinus HOM05D004394 ORTHO05D005208 1.6e-43 179.5 125 66.4
Gohir.A06G035600 Gossypium hirsutum HOM05D004394 ORTHO05D005208 1.6e-43 179.5 125 67.2
Peaxi162Scf00041g00179 Petunia axillaris HOM05D004394 ORTHO05D005208 1.6e-43 179.5 123 63.4
Cfa013636 Carpinus fangiana HOM05D004394 ORTHO05D005208 2.1e-43 179.1 123 65.9
Duzib093G1861 Durio zibethinus HOM05D004394 ORTHO05D005208 2.7e-43 178.7 125 66.4
Migut.C01173 Erythranthe guttata HOM05D004394 ORTHO05D005208 2.7e-43 178.7 123 65.0
Lalb_Chr08g0242051 Lupinus albus HOM05D004394 ORTHO05D005208 2.7e-43 178.7 123 65.9
Oeu046302.1 Olea europaea HOM05D004394 ORTHO05D005208 2.7e-43 178.7 123 65.0
CSS0017732 Camellia sinensis var. sinensis HOM05D004394 ORTHO05D005208 3.5e-43 178.3 123 65.0
Psat2g179880 Pisum sativum HOM05D004394 ORTHO05D005208 3.5e-43 178.3 123 64.2
Thecc.08G106700 Theobroma cacao HOM05D004394 ORTHO05D005208 3.5e-43 178.3 125 66.4
Gohir.D06G036200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 6.0e-43 177.6 125 66.4
Gorai.010G040200 Gossypium raimondii HOM05D004394 ORTHO05D005208 6.0e-43 177.6 125 66.4
Sc01g0000460 Simmondsia chinensis HOM05D004394 ORTHO05D005208 6.0e-43 177.6 123 66.7
Aqoxy6G00782 Aquilegia oxysepala HOM05D004394 ORTHO05D005208 7.9e-43 177.2 123 64.2
Dinv36547 Davidia involucrata HOM05D004394 ORTHO05D005208 7.9e-43 177.2 121 65.3
Lj2g0026973 Lotus japonicus HOM05D004394 ORTHO05D005208 7.9e-43 177.2 123 64.2
Phvul.007G087400 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 7.9e-43 177.2 123 63.4
TPR.G17517 Trifolium pratense HOM05D004394 ORTHO05D005208 7.9e-43 177.2 123 64.2
unitig_899.g14554 Utricularia gibba HOM05D000298 ORTHO05D000553 7.9e-43 177.2 123 63.4
Actinidia10324 Actinidia chinensis HOM05D004394 ORTHO05D005208 1.3e-42 176.4 123 65.0
MSTRG.25920 Avicennia marina HOM05D004394 ORTHO05D005208 1.3e-42 176.4 123 63.4
HanXRQChr07g0194691 Helianthus annuus HOM05D004394 ORTHO05D005208 1.3e-42 176.4 124 66.1
Oeu012929.1 Olea europaea HOM05D004394 ORTHO05D005208 1.3e-42 176.4 123 64.2
Psat1g170200 Pisum sativum HOM05D004394 ORTHO05D005208 1.3e-42 176.4 123 63.4
Manes.08G094000 Manihot esculenta HOM05D004394 ORTHO05D005208 1.8e-42 176.0 123 65.0
Medtr2g028730 Medicago truncatula HOM05D004394 ORTHO05D005208 2.3e-42 175.6 123 63.4
TPR.G10620 Trifolium pratense HOM05D004394 ORTHO05D005208 2.3e-42 175.6 123 62.6
Actinidia30773 Actinidia chinensis HOM05D004394 ORTHO05D005208 3.0e-42 175.3 122 64.8
QL03p027611 Quercus lobata HOM05D004394 ORTHO05D005208 3.0e-42 175.3 123 64.2
THA.LOC104800150 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 3.0e-42 175.3 125 65.6
CDE06G0322 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 3.9e-42 174.9 123 65.0
Glyma.20G173300 Glycine max HOM05D004394 ORTHO05D005208 3.9e-42 174.9 123 61.8
PGSC0003DMG400006413 Solanum tuberosum HOM05D004394 ORTHO05D005208 3.9e-42 174.9 123 63.4
Potri.002G096600 Populus trichocarpa HOM05D004394 ORTHO05D005208 5.1e-42 174.5 123 62.6
Cc10_g07190 Coffea canephora HOM05D004394 ORTHO05D005208 6.7e-42 174.1 123 64.2
HanXRQChr04g0126451 Helianthus annuus HOM05D004394 ORTHO05D005208 6.7e-42 174.1 124 65.3
RcHm_v2.0_Chr7g0238971 Rosa chinensis HOM05D004394 ORTHO05D005208 6.7e-42 174.1 123 63.4
BcaC06g34947 Brassica carinata HOM05D004394 ORTHO05D005208 8.7e-42 173.7 126 64.3
BolC7t42673H Brassica oleracea HOM05D004394 ORTHO05D005208 8.7e-42 173.7 126 64.3
Nitab4.5_0000232g0200 Nicotiana tabacum HOM05D004394 ORTHO05D005208 1.1e-41 173.3 123 61.8
Sabra02G0076100 Salix brachista HOM05D004394 ORTHO05D005208 1.1e-41 173.3 123 61.8
MBI05_g37052_MAGBIO Magnolia biondii HOM05D004394 ORTHO05D005208 1.5e-41 172.9 123 61.8
Carub.0001s2182 Capsella rubella HOM05D004394 ORTHO05D005208 1.9e-41 172.6 125 65.6
CAN.G101.27 Capsicum annuum HOM05D004394 ORTHO05D005208 1.9e-41 172.6 123 63.4
Sopen04g029330 Solanum pennellii HOM05D004394 ORTHO05D005208 1.9e-41 172.6 123 61.8
VMungo0720G0524 Vigna mungo HOM05D004394 ORTHO05D005208 1.9e-41 172.6 121 62.0
BraA07t29204Z Brassica rapa HOM05D004394 ORTHO05D005208 2.5e-41 172.2 126 63.5
AUR62027759 Chenopodium quinoa HOM05D004394 ORTHO05D005208 2.5e-41 172.2 123 61.8
Ciclev10003351m.g Citrus clementina HOM05D004394 ORTHO05D005208 2.5e-41 172.2 124 63.7
C07p21470 Brassica napus HOM05D004394 ORTHO05D005208 3.3e-41 171.8 124 63.7
CDE02G1736 Ceratophyllum demersum HOM05D004394 ORTHO05D005208 3.3e-41 171.8 123 63.4
Glyma.10G218300 Glycine max HOM05D004394 ORTHO05D005208 3.3e-41 171.8 123 61.8
Gohir.A05G267200 Gossypium hirsutum HOM05D004394 ORTHO05D005208 4.3e-41 171.4 125 64.8
ECA238G4620 Erigeron canadensis HOM05D004394 ORTHO05D005208 5.6e-41 171.0 124 62.1
Eucgr.D01128 Eucalyptus grandis HOM05D004394 ORTHO05D005208 5.6e-41 171.0 123 61.8
Thhalv10009116m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 5.6e-41 171.0 126 63.5
Atru.chr13.1186 Acer truncatum HOM05D004394 ORTHO05D005208 7.4e-41 170.6 124 61.3
Sp1g19780 Schrenkiella parvula HOM05D004394 ORTHO05D005208 7.4e-41 170.6 126 62.7
BcaB07g32248 Brassica carinata HOM05D004394 ORTHO05D005208 9.6e-41 170.2 129 59.7
Lsat_1_v5_gn_2_108521 Lactuca sativa HOM05D004394 ORTHO05D005208 9.6e-41 170.2 124 62.9
Potri.005G165000 Populus trichocarpa HOM05D004394 ORTHO05D005208 9.6e-41 170.2 123 61.0
Lalb_Chr11g0065431 Lupinus albus HOM05D004394 ORTHO05D005208 1.3e-40 169.9 123 61.8
AT1G22270 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 1.6e-40 169.5 125 61.6
A07p14580 Brassica napus HOM05D004394 ORTHO05D005208 2.1e-40 169.1 125 62.4
Gorai.009G281400 Gossypium raimondii HOM05D004394 ORTHO05D005208 2.1e-40 169.1 125 64.0
AagrBONN_evm.TU.Sc2ySwM_344.4664 Anthoceros agrestis HOM05D004394 ORTHO05D005208 2.8e-40 168.7 123 64.2
AL1G35720 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 2.8e-40 168.7 125 61.6
Gohir.D05G268800 Gossypium hirsutum HOM05D004394 ORTHO05D005208 2.8e-40 168.7 125 64.0
Medtr1g050345 Medicago truncatula HOM05D004394 ORTHO05D005208 2.8e-40 168.7 123 61.0
A09p42510 Brassica napus HOM05D004394 ORTHO05D005208 3.7e-40 168.3 128 60.2
BraA09t39727Z Brassica rapa HOM05D004394 ORTHO05D005208 3.7e-40 168.3 128 60.2
Sabra05G0124400 Salix brachista HOM05D004394 ORTHO05D005208 3.7e-40 168.3 121 62.0
Aa31LG7G6210 Aethionema arabicum HOM05D004394 ORTHO05D005208 4.8e-40 167.9 125 63.2
CARHR022650 Cardamine hirsuta HOM05D004394 ORTHO05D005208 4.8e-40 167.9 125 62.4
ClCG08G011100 Citrullus lanatus HOM05D004394 ORTHO05D005208 4.8e-40 167.9 123 60.2
Hma1.2p1_0575F.1_g181580 Hydrangea macrophylla HOM05D004394 ORTHO05D005208 4.8e-40 167.9 116 64.7
Cpa.g.sc53.145 Carica papaya HOM05D004394 ORTHO05D005208 6.2e-40 167.5 124 64.5
Phvul.002G138800 Phaseolus vulgaris HOM05D004394 ORTHO05D005208 6.2e-40 167.5 122 59.8
CARHR071660 Cardamine hirsuta HOM05D004394 ORTHO05D005208 1.1e-39 166.8 125 60.0
Atru.chr5.2725 Acer truncatum HOM05D004394 ORTHO05D005208 1.4e-39 166.4 124 62.1
BcaC05g26154 Brassica carinata HOM05D004394 ORTHO05D005208 1.4e-39 166.4 127 60.6
C05p21390 Brassica napus HOM05D004394 ORTHO05D005208 1.4e-39 166.4 127 60.6
Cpa.g.sc36.132 Carica papaya HOM05D004394 ORTHO05D005208 1.4e-39 166.4 124 64.5
THA.LOC104809715 Tarenaya hassleriana HOM05D004394 ORTHO05D005208 1.4e-39 166.4 125 60.8
DCAR_008736 Daucus carota HOM05D004394 ORTHO05D005208 1.8e-39 166.0 124 60.5
SHI20485 Sapria himalayana HOM05D004394 ORTHO05D005208 3.1e-39 165.2 121 61.2
Sed0012623 Sechium edule HOM05D004394 ORTHO05D005208 5.3e-39 164.5 123 58.5
Cre12.g512550 Chlamydomonas reinhardtii HOM05D004394 ORTHO05D005208 6.9e-39 164.1 122 58.2
MELO3C011026.2 Cucumis melo HOM05D004394 ORTHO05D005208 6.9e-39 164.1 123 59.3
MD15G1369300 Malus domestica HOM05D004394 ORTHO05D005208 1.5e-38 162.9 116 63.8
CsaV3_2G029680 Cucumis sativus L. HOM05D004394 ORTHO05D005208 2.0e-38 162.5 123 58.5
Sp5g33330 Schrenkiella parvula HOM05D004394 ORTHO05D005208 2.0e-38 162.5 125 60.0
BolC5t30836H Brassica oleracea HOM05D004394 ORTHO05D005208 2.6e-38 162.2 127 59.1
Thhalv10019322m.g Eutrema salsugineum HOM05D004394 ORTHO05D005208 2.6e-38 162.2 125 59.2
AL2G38520 Arabidopsis lyrata HOM05D004394 ORTHO05D005208 3.4e-38 161.8 125 58.4
TWI36G1364 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 3.4e-38 161.8 124 58.9
AT1G78190 Arabidopsis thaliana HOM05D004394 ORTHO05D005208 4.5e-38 161.4 125 60.0
CANSAT35G1737 Cannabis sativa HOM05D004394 ORTHO05D005208 5.8e-38 161.0 115 62.6
TWI12G1259 Tripterygium wilfordii HOM05D004394 ORTHO05D005208 5.8e-38 161.0 124 60.5
COL.COLO4_16398 Corchorus olitorius HOM05D004394 ORTHO05D005208 7.6e-38 160.6 118 63.6
Carub.0002s2509 Capsella rubella HOM05D004394 ORTHO05D005208 9.9e-38 160.2 123 56.9
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 1.3e-37 159.8 121 59.5
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 1.3e-37 159.8 121 59.5
EL10Ac1g01214 Beta vulgaris HOM05D004394 ORTHO05D005208 1.7e-37 159.5 116 59.5
BcaB03g15991 Brassica carinata HOM05D004394 ORTHO05D005208 1.7e-37 159.5 125 60.0
BcaC08g47394 Brassica carinata HOM05D004394 ORTHO05D005208 1.7e-37 159.5 123 58.5
Solyc04g074150.3 Solanum lycopersicum HOM05D004394 ORTHO05D005208 2.9e-37 158.7 116 59.5
CANSAT80G2909 Cannabis sativa HOM05D004394 ORTHO05D005208 6.4e-37 157.5 118 58.5
Haze_00323 Corylus avellana HOM05D004394 ORTHO05D005208 1.1e-36 156.8 123 60.2
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 7.1e-36 154.1 121 57.9
MCO01G362 Micromonas commoda HOM05D004394 ORTHO05D005208 6.0e-35 151.0 122 58.2
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 7.9e-35 150.6 121 56.2
BcaB03g14221 Brassica carinata HOM05D004394 ORTHO05D005208 1.3e-34 149.8 113 61.9
Nn4g22250 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.0e-34 148.7 109 59.6
Rhsim06G0082000 Rhododendron simsii HOM05D004394 ORTHO05D005208 5.1e-34 147.9 110 58.2
Nn6g33602 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.3e-33 145.2 116 56.0
Zm00001eb109660 Zea mays HOM05D004394 ORTHO05D005208 7.4e-33 144.1 132 50.0
Nitab4.5_0005777g0070 Nicotiana tabacum HOM05D004394 ORTHO05D005208 5.3e-31 137.9 105 57.1
Os07g0623000 Oryza sativa ssp. japonica HOM05D004394 ORTHO05D005208 9.0e-31 137.1 131 48.1
Cpa.g.sc247.5 Carica papaya HOM05D004394 ORTHO05D005208 1.2e-30 136.7 122 54.1
PRCOL_00005343 Prasinoderma coloniale HOM05D004394 ORTHO05D005208 1.2e-30 136.7 132 53.0
AUR62038524 Chenopodium quinoa HOM05D004394 ORTHO05D005208 4.5e-30 134.8 88 63.6
SEGI_26774 Sequoiadendron giganteum HOM05D004394 ORTHO05D005208 7.4e-25 117.5 63 76.2
CiPaw.07G180000 Carya illinoinensis HOM05D004394 ORTHO05D005208 2.8e-24 115.5 106 51.9
Nn8g39569 Nelumbo nucifera HOM05D004394 ORTHO05D005208 2.8e-24 115.5 111 48.6
Haze_27710 Corylus avellana HOM05D004394 ORTHO05D005208 9.0e-23 110.5 122 43.4
Cpa.g.sc257.3 Carica papaya HOM05D004394 ORTHO05D005208 1.5e-22 109.8 123 44.7
Cfa016137 Carpinus fangiana HOM05D004394 ORTHO05D005208 1.2e-19 100.1 115 45.2
QL05p087667 Quercus lobata HOM05D004394 ORTHO05D000126 4.6e-19 98.2 68 61.8
Lsat_1_v5_gn_4_16040 Lactuca sativa HOM05D004394 ORTHO05D005208 1.5e-17 93.2 123 41.5
Nn1g03585 Nelumbo nucifera HOM05D004394 ORTHO05D005208 3.4e-14 82.0 57 59.6
HanXRQChr03g0069311 Helianthus annuus HOM05D004394 ORTHO05D005208 1.0e-10 70.5 39 71.8


User provided reference genes

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